Rmu_co8290691.1_g000001

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8290691.1
OG0000368
Physical Location & Seq
Reverse (-)
14 .. 649
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8290691.1_g000001.1.cds

Sequence Viewer

Length: 636 bp
atggcaataactgcttctttgctccaacccaatcccctgaaatggaaccaaacccaccaccaccctcaccctcttctcttctcccctttccgccccaatatactcaaactcaacaccccgcaatctttcaagctcaaatgctcctcctccgaatccaaaccagacctcgtggcagtgaaaccgaacccaatagaggttttagcagataagctcttgaaggctctcaaggcgctgaggaagcccgcaatggcggcggtgttattgggcctggtgttgatgtccgacccgagttcggctttggccgcctcgggcggtcgggtcgggggcaaggccttctcgtcgcgctcgaattcttcgtcgtcgtcgaggagttactcggtgccgaggacgtcgaggccggattactcgtactctgcgccgtactacgcgccttcgccgttcgggtttagcggcggaggaggcgggttttatatgggcccggcggtaggggtcggagtcggagccgggtcgagtttctttctgattttgacgggttttgcggcgtttgttttggtttcgggttttctttcggatcggtctgaggggagtgtgcttactgctactgagaaaactactgttttgaagttgcaggtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

211

Amino Acids

22.16

Weight (kDa)

10.05

Isoelectric Point (pI)

58.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 392
Acc36I ACCTGC 1 cut(s) 619
AccB1I GGYRCC 1 cut(s) 379
AccII CGCG 2 cut(s) 343, 428
AclWI GGATC 1 cut(s) 579
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 1 cut(s) 349
AcyI GRCGYC 1 cut(s) 389
AfaI GTAC 2 cut(s) 410, 422
AfiI CCNNNNNNNGG 4 cut(s) 42, 193, 292, 485
AgsI TTSAA 3 cut(s) 130, 217, 622
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 2 cut(s) 133, 211
AluI AGCT 2 cut(s) 133, 211
AlwI GGATC 1 cut(s) 579
Ama87I CYCGRG 2 cut(s) 286, 307
AoxI GGCC 5 cut(s) 265, 300, 330, 395, 475
ApaI GGGCCC 1 cut(s) 479
ApoI RAATTY 1 cut(s) 349
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
AspLEI GCGC 4 cut(s) 232, 345, 418, 430
AspS9I GGNCC 3 cut(s) 265, 475, 476
AsuC2I CCSGG 2 cut(s) 479, 505
AsuHPI GGTGA 1 cut(s) 59
AvaI CYCGRG 2 cut(s) 286, 307
BaeGI GKGCMC 1 cut(s) 479
BanI GGYRCC 1 cut(s) 379
BanII GRGCYC 1 cut(s) 479
BauI CACGAG 1 cut(s) 167
BbvCI CCTCAGC 1 cut(s) 233
BceAI ACGGC 2 cut(s) 403, 421
BciT130I CCWGG 1 cut(s) 269
BcnI CCSGG 2 cut(s) 479, 505
BfoI RGCGCY 1 cut(s) 233
BfuAI ACCTGC 1 cut(s) 619
BisI GCNGC 4 cut(s) 252, 303, 451, 540
BlsI GCNGC 4 cut(s) 253, 304, 452, 541
Bme1390I CCNGG 3 cut(s) 269, 479, 505
BmeT110I CYCGRG 2 cut(s) 286, 307
BmgT120I GGNCC 3 cut(s) 265, 475, 476
BmiI GGNNCC 4 cut(s) 47, 381, 477, 502
BmrFI CCNGG 3 cut(s) 269, 479, 505
Bpu10I CCTNAGC 1 cut(s) 233
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 2 cut(s) 479, 505
BsaHI GRCGYC 1 cut(s) 389
BsaJI CCNNGG 2 cut(s) 306, 383
Bsc4I CCNNNNNNNGG 4 cut(s) 42, 193, 292, 485
Bse3DI GCAATG 1 cut(s) 252
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 2 cut(s) 306, 383
BseLI CCNNNNNNNGG 4 cut(s) 42, 193, 292, 485
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 3 cut(s) 224, 570, 594
BseRI GAGGAG 4 cut(s) 133, 136, 382, 471
BseSI GKGCMC 1 cut(s) 479
Bsh1236I CGCG 2 cut(s) 343, 428
Bsh1285I CGRYCG 1 cut(s) 316
BshFI GGCC 5 cut(s) 267, 302, 332, 397, 477
BshNI GGYRCC 1 cut(s) 379
BsiEI CGRYCG 1 cut(s) 316
BsiHKCI CYCGRG 2 cut(s) 286, 307
BsiSI CCGG 3 cut(s) 398, 479, 504
BslI CCNNNNNNNGG 4 cut(s) 42, 193, 292, 485
BsnI GGCC 5 cut(s) 267, 302, 332, 397, 477
BsoBI CYCGRG 2 cut(s) 286, 307
Bsp120I GGGCCC 1 cut(s) 475
Bsp1286I GDGCHC 1 cut(s) 479
Bsp143I GATC 1 cut(s) 571
BspANI GGCC 5 cut(s) 267, 302, 332, 397, 477
BspCNI CTCAG 3 cut(s) 225, 571, 595
BspFNI CGCG 2 cut(s) 343, 428
BspLI GGNNCC 4 cut(s) 47, 381, 477, 502
BspMI ACCTGC 1 cut(s) 619
BspPI GGATC 1 cut(s) 579
BspT107I GGYRCC 1 cut(s) 379
BsrDI GCAATG 1 cut(s) 252
BssECI CCNNGG 2 cut(s) 306, 383
BssMI GATC 1 cut(s) 571
BssNI GRCGYC 1 cut(s) 389
BssSI CACGAG 1 cut(s) 167
Bst2BI CACGAG 1 cut(s) 167
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 1 cut(s) 616
Bst6I CTCTTC 2 cut(s) 78, 83
BstACI GRCGYC 1 cut(s) 389
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 3 cut(s) 233, 579, 603
BstFNI CGCG 2 cut(s) 343, 428
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 4 cut(s) 232, 345, 418, 430
BstKTI GATC 1 cut(s) 574
BstMBI GATC 1 cut(s) 571
BstMCI CGRYCG 1 cut(s) 316
BstMWI GCNNNNNNNGC 6 cut(s) 11, 227, 238, 251, 302, 459
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 3 cut(s) 267, 477, 503
BstSLI GKGCMC 1 cut(s) 479
BstUI CGCG 2 cut(s) 343, 428
BsuRI GGCC 5 cut(s) 267, 302, 332, 397, 477
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 180
BveI ACCTGC 1 cut(s) 619
Cac8I GCNNGC 1 cut(s) 243
CfoI GCGC 4 cut(s) 232, 345, 418, 430
Cfr13I GGNCC 3 cut(s) 265, 475, 476
Csp6I GTAC 2 cut(s) 409, 421
CviQI GTAC 2 cut(s) 409, 421
DdeI CTNAG 3 cut(s) 233, 579, 603
DpnI GATC 1 cut(s) 573
DpnII GATC 1 cut(s) 571
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 2 cut(s) 78, 83
EarI CTCTTC 2 cut(s) 78, 83
EciI GGCGGA 2 cut(s) 80, 468
Eco147I AGGCCT 1 cut(s) 332
Eco24I GRGCYC 1 cut(s) 479
Eco88I CYCGRG 2 cut(s) 286, 307
EcoRI GAATTC 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 267
EcoT38I GRGCYC 1 cut(s) 479
FaiI YATR 4 cut(s) 101, 471, 473, 634
FauI CCCGC 3 cut(s) 126, 250, 455
Fnu4HI GCNGC 4 cut(s) 252, 303, 451, 540
FriOI GRGCYC 1 cut(s) 479
Fsp4HI GCNGC 4 cut(s) 252, 303, 451, 540
GlaI GCGC 4 cut(s) 231, 344, 417, 429
GluI GCNGC 4 cut(s) 252, 303, 451, 540
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 5 cut(s) 267, 302, 332, 397, 477
HapII CCGG 3 cut(s) 398, 479, 504
HhaI GCGC 4 cut(s) 232, 345, 418, 430
Hin1I GRCGYC 1 cut(s) 389
Hin6I GCGC 4 cut(s) 230, 343, 416, 428
HinP1I GCGC 4 cut(s) 230, 343, 416, 428
HinfI GANTC 2 cut(s) 152, 495
HpaII CCGG 3 cut(s) 398, 479, 504
HphI GGTGA 1 cut(s) 59
Hpy188I TCNGA 7 cut(s) 151, 283, 494, 500, 522, 571, 580
Hpy188III TCNNGA 1 cut(s) 214
Hpy99I CGWCG 5 cut(s) 343, 361, 364, 367, 394
HpyAV CCTTC 3 cut(s) 211, 343, 441
HpyCH4III ACNGT 1 cut(s) 616
HpyCH4IV ACGT 1 cut(s) 389
HpyCH4V TGCA 1 cut(s) 628
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 227, 238, 251, 302, 459
HpyF3I CTNAG 3 cut(s) 233, 579, 603
HpySE526I ACGT 1 cut(s) 389
Hsp92I GRCGYC 1 cut(s) 389
HspAI GCGC 4 cut(s) 230, 343, 416, 428
Kzo9I GATC 1 cut(s) 571
LmnI GCTCC 3 cut(s) 27, 146, 500
LpnPI CCDG 8 cut(s) 50, 174, 254, 281, 411, 492, 517, 614
MaeII ACGT 1 cut(s) 389
MaeIII GTNAC 1 cut(s) 371
MalI GATC 1 cut(s) 573
MboI GATC 1 cut(s) 571
MboII GAAGA 3 cut(s) 65, 70, 345
MhlI GDGCHC 1 cut(s) 479
MluCI AATT 1 cut(s) 349
MlyI GAGTC 1 cut(s) 504
MmeI TCCRAC 4 cut(s) 49, 306, 472, 478
MspI CCGG 3 cut(s) 398, 479, 504
MspR9I CCNGG 3 cut(s) 269, 479, 505
MvaI CCWGG 1 cut(s) 269
MvnI CGCG 2 cut(s) 343, 428
MwoI GCNNNNNNNGC 6 cut(s) 11, 227, 238, 251, 302, 459
NciI CCSGG 2 cut(s) 479, 505
NdeII GATC 1 cut(s) 571
NlaIV GGNNCC 4 cut(s) 47, 381, 477, 502
NmeAIII GCCGAG 1 cut(s) 408
PceI AGGCCT 1 cut(s) 332
PcsI WCGNNNNNNNCGW 3 cut(s) 344, 353, 362
PfeI GAWTC 1 cut(s) 152
PkrI GCNGC 4 cut(s) 253, 304, 452, 541
PleI GAGTC 1 cut(s) 503
PpsI GAGTC 1 cut(s) 503
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 4 cut(s) 47, 381, 477, 502
PspOMI GGGCCC 1 cut(s) 475
PspPI GGNCC 3 cut(s) 265, 475, 476
RsaI GTAC 2 cut(s) 410, 422
RsaNI GTAC 2 cut(s) 409, 421
SatI GCNGC 4 cut(s) 252, 303, 451, 540
Sau3AI GATC 1 cut(s) 571
Sau96I GGNCC 3 cut(s) 265, 475, 476
SchI GAGTC 1 cut(s) 504
ScrFI CCNGG 3 cut(s) 269, 479, 505
SduI GDGCHC 1 cut(s) 479
SetI ASST 6 cut(s) 135, 168, 198, 213, 392, 633
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 1 cut(s) 349
SseBI AGGCCT 1 cut(s) 332
StuI AGGCCT 1 cut(s) 332
StyD4I CCNGG 3 cut(s) 267, 477, 503
TaaI ACNGT 1 cut(s) 616
TaiI ACGT 1 cut(s) 392
TaqI TCGA 4 cut(s) 347, 365, 392, 509
TaqII GACCGA 1 cut(s) 564
TasI AATT 1 cut(s) 349
TauI GCSGC 4 cut(s) 254, 305, 453, 542
TfiI GAWTC 1 cut(s) 152
TscAI CASTG 1 cut(s) 180
TspRI CASTG 1 cut(s) 180
XapI RAATTY 1 cut(s) 349
ZraI GACGTC 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.