Prupe.6G339400_v2.0.a1

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000368
Physical Location & Seq
Forward (+)
29374648 .. 29378971
4324 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G339400.1

Sequence Viewer

Length: 1221 bp
ATGGCAACTGCTTCGTTGCTCCAACCCAACCCATTGAAATGGAAGCATAGCAGCTGCCCATTTCTCTTGCCTCCTCTTCGTCCTCTGCCCACCAAGCCAATCAAATTCAGCTCAACCTTCGACGTTGAACAAGCTTCCTGTAATTTCAAGGTCAAATGCTTCAAGCACTCAACAGACTCAAAACCAGACCTTGATGACACTCAGTCTGTGCCCCTTGTTATCAAAGATAACCCAGCAAACCCGCTTGAGCTTATCGCCAGTAAACTATTAAATGCTCTCAAGGCGTTGAGAAAGCCGGCAATGGCTGCCGTTTTATTGGGTCTGTTATTGATGTCCGACCCGAATTCGGCATTGGCCGCCTCGGGCGGGCGGGTCGGGGGGAACTCGTTCTCGTCGCGGTCGTCTTCTTCGTCGTCATCGTCGAGGAGTTACTCGGTGCCGAGGACTTCAAGTTCAAGACCCGATTTTTCGTACTCCGCGCCTTACTACGCACCTTCGCCGTTCGGGTTCAGTGGGGGTGGTGGCGTTTACGTTGGGCCAGCATTTGGGTTCGGAGTGGGTGCCGGGTCGAGTTTCTTTCTGATCTTGACGGGTTTCGCTGCGTTTGTTTTGGTTTCGGGGTTCCTCTCGGATCGGTCCGAGGGTAGTGTGCTTACTGCTACCGAGAAAACAACTGTTCTCAAGCTTCAGGTTGGTTTGTTAGGCATGGGGCGAGCACTTCAAAGGGATCTTAATCGGATTGCTGAAACTGCAGATACTTCTACCTCGGAGGGTTTGGGATATGTTTTGACAGAGACAACACTAGCTTTGCTTCGGCATCCTGATTATTGCATCTCAGGTTATTCATCTGTTGCTCAAAAGCGAGGCATAGAGGATGCAGAGAAACGCTTTAATCAGCTTTCTATTGAAGAAAGGGGTAAATTTGACGAAGAGACACTTGTCAATGTGAACAACATAAAAAGGCAAAGCTCATCAAGCCAGAGAGCTAATGGATTCCGCAACGAATATATAGTGATAACGATATTGGTGGCTGCTGAAGGAGTGCATAAGTTGCCCGCCATCAATGGTAGTGGGGACTTGAAGGAAGCGTTGCAAAAGCTTGGATCCATTCCCTCAAACAAAATATTAGCAGTAGAGGTGTTGTGGACTCCTCAGAATGAAATTGACACTCTGTCAGAGCGGGAACTACTTGAAGATTACCCGCTTCTGAGGCCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

407

Amino Acids

43.65

Weight (kDa)

8.73

Isoelectric Point (pI)

53.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 436, 560
AccB7I CCANNNNNTGG 1 cut(s) 545
AccBSI CCGCTC 1 cut(s) 1180
AccII CGCG 2 cut(s) 397, 479
AclWI GGATC 4 cut(s) 639, 735, 1098, 1111
AcoI YGGCCR 1 cut(s) 354
AcsI RAATTY 3 cut(s) 104, 343, 920
AcuI CTGAAG 2 cut(s) 671, 1056
AfaI GTAC 1 cut(s) 473
AfiI CCNNNNNNNGG 3 cut(s) 346, 366, 545
AhdI GACNNNNNGTC 2 cut(s) 202, 1171
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AloI GAACNNNNNNTCC 2 cut(s) 436, 468
Alw21I GWGCWC 1 cut(s) 718
Alw26I GTCTC 2 cut(s) 788, 926
AlwI GGATC 4 cut(s) 639, 735, 1098, 1111
Ama87I CYCGRG 1 cut(s) 361
AoxI GGCC 3 cut(s) 354, 536, 1211
ApeKI GCWGC 5 cut(s) 51, 54, 305, 599, 1031
ApoI RAATTY 3 cut(s) 104, 343, 920
Asp700I GAANNNNTTC 1 cut(s) 386
AspLEI GCGC 1 cut(s) 481
AspS9I GGNCC 2 cut(s) 536, 636
AsuC2I CCSGG 1 cut(s) 565
AvaI CYCGRG 1 cut(s) 361
AvaII GGWCC 1 cut(s) 636
BaeGI GKGCMC 1 cut(s) 213
BamHI GGATCC 1 cut(s) 1103
BanI GGYRCC 2 cut(s) 436, 560
BbsI GAAGAC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 718
BbvI GCAGC 5 cut(s) 41, 63, 292, 586, 1018
BccI CCATC 1 cut(s) 1067
BceAI ACGGC 2 cut(s) 293, 484
BcgI CGANNNNNNTGC 1 cut(s) 28
BcnI CCSGG 1 cut(s) 565
BcoDI GTCTC 2 cut(s) 788, 926
BfaI CTAG 1 cut(s) 803
BfmI CTRYAG 1 cut(s) 750
BisI GCNGC 6 cut(s) 52, 55, 306, 357, 600, 1032
BlsI GCNGC 6 cut(s) 53, 56, 307, 358, 601, 1033
Bme1390I CCNGG 1 cut(s) 565
Bme18I GGWCC 1 cut(s) 636
BmeRI GACNNNNNGTC 2 cut(s) 202, 1171
BmeT110I CYCGRG 1 cut(s) 361
BmgT120I GGNCC 2 cut(s) 536, 636
BmiI GGNNCC 4 cut(s) 438, 562, 623, 1105
BmrFI CCNGG 1 cut(s) 565
BmsI GCATC 3 cut(s) 826, 840, 865
BoxI GACNNNNGTC 1 cut(s) 938
BpiI GAAGAC 1 cut(s) 396
BpuEI CTTGAG 3 cut(s) 263, 266, 665
BpuMI CCSGG 1 cut(s) 565
BsaBI GATNNNNATC 1 cut(s) 732
BsaJI CCNNGG 4 cut(s) 360, 440, 639, 765
Bsc4I CCNNNNNNNGG 3 cut(s) 346, 366, 545
Bse118I RCCGGY 1 cut(s) 295
Bse1I ACTGG 1 cut(s) 258
Bse3DI GCAATG 1 cut(s) 306
Bse8I GATNNNNATC 1 cut(s) 732
BseDI CCNNGG 4 cut(s) 360, 440, 639, 765
BseGI GGATG 2 cut(s) 817, 880
BseJI GATNNNNATC 1 cut(s) 732
BseLI CCNNNNNNNGG 3 cut(s) 346, 366, 545
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 4 cut(s) 215, 849, 1166, 1199
BseNI ACTGG 1 cut(s) 258
BseRI GAGGAG 3 cut(s) 63, 439, 1140
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 5 cut(s) 41, 63, 292, 586, 1018
BseYI CCCAGC 1 cut(s) 232
Bsh1236I CGCG 2 cut(s) 397, 479
Bsh1285I CGRYCG 1 cut(s) 401
BshFI GGCC 3 cut(s) 356, 538, 1213
BshNI GGYRCC 2 cut(s) 436, 560
BsiEI CGRYCG 1 cut(s) 401
BsiHKAI GWGCWC 1 cut(s) 718
BsiHKCI CYCGRG 1 cut(s) 361
BsiSI CCGG 2 cut(s) 296, 564
BslFI GGGAC 1 cut(s) 1088
BslI CCNNNNNNNGG 3 cut(s) 346, 366, 545
BsmAI GTCTC 2 cut(s) 788, 926
BsmFI GGGAC 1 cut(s) 1088
BsnI GGCC 3 cut(s) 356, 538, 1213
BsoBI CYCGRG 1 cut(s) 361
Bsp1286I GDGCHC 2 cut(s) 213, 718
Bsp143I GATC 4 cut(s) 582, 631, 727, 1103
BspANI GGCC 3 cut(s) 356, 538, 1213
BspCNI CTCAG 4 cut(s) 214, 848, 1165, 1200
BspFNI CGCG 2 cut(s) 397, 479
BspLI GGNNCC 4 cut(s) 438, 562, 623, 1105
BspMAI CTGCAG 1 cut(s) 754
BspPI GGATC 4 cut(s) 639, 735, 1098, 1111
BspT107I GGYRCC 2 cut(s) 436, 560
BsrBI CCGCTC 1 cut(s) 1180
BsrDI GCAATG 1 cut(s) 306
BsrFI RCCGGY 1 cut(s) 295
BsrI ACTGG 1 cut(s) 258
BssAI RCCGGY 1 cut(s) 295
BssECI CCNNGG 4 cut(s) 360, 440, 639, 765
BssMI GATC 4 cut(s) 582, 631, 727, 1103
Bst4CI ACNGT 1 cut(s) 676
Bst6I CTCTTC 2 cut(s) 81, 924
BstAPI GCANNNNNTGC 2 cut(s) 305, 1051
BstC8I GCNNGC 5 cut(s) 297, 368, 540, 714, 1056
BstDEI CTNAG 4 cut(s) 201, 835, 1152, 1208
BstF5I GGATG 2 cut(s) 817, 880
BstFNI CGCG 2 cut(s) 397, 479
BstHHI GCGC 1 cut(s) 481
BstKTI GATC 4 cut(s) 585, 634, 730, 1106
BstMAI GTCTC 2 cut(s) 788, 926
BstMBI GATC 4 cut(s) 582, 631, 727, 1103
BstMCI CGRYCG 1 cut(s) 401
BstMWI GCNNNNNNNGC 8 cut(s) 94, 281, 305, 356, 749, 975, 1051, 1210
BstPAI GACNNNNGTC 1 cut(s) 938
BstSCI CCNGG 1 cut(s) 563
BstSFI CTRYAG 1 cut(s) 750
BstSLI GKGCMC 1 cut(s) 213
BstUI CGCG 2 cut(s) 397, 479
BstV1I GCAGC 5 cut(s) 41, 63, 292, 586, 1018
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 2 cut(s) 727, 1103
BstXI CCANNNNNNTGG 1 cut(s) 39
BstYI RGATCY 2 cut(s) 727, 1103
BsuRI GGCC 3 cut(s) 356, 538, 1213
BtsCI GGATG 2 cut(s) 817, 880
BtsIMutI CAGTG 1 cut(s) 517
Cac8I GCNNGC 5 cut(s) 297, 368, 540, 714, 1056
CfoI GCGC 1 cut(s) 481
Cfr10I RCCGGY 1 cut(s) 295
Cfr13I GGNCC 2 cut(s) 536, 636
CpoI CGGWCCG 1 cut(s) 636
Csp6I GTAC 1 cut(s) 472
CspCI CAANNNNNGTGG 2 cut(s) 1051, 1086
CspI CGGWCCG 1 cut(s) 636
CviAII CATG 1 cut(s) 706
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 4 cut(s) 201, 835, 1152, 1208
DpnI GATC 4 cut(s) 584, 633, 729, 1105
DpnII GATC 4 cut(s) 582, 631, 727, 1103
DriI GACNNNNNGTC 2 cut(s) 202, 1171
EaeI YGGCCR 1 cut(s) 354
Eam1104I CTCTTC 2 cut(s) 81, 924
Eam1105I GACNNNNNGTC 2 cut(s) 202, 1171
EarI CTCTTC 2 cut(s) 81, 924
Eco147I AGGCCT 1 cut(s) 1213
Eco47I GGWCC 1 cut(s) 636
Eco57I CTGAAG 2 cut(s) 671, 1056
Eco88I CYCGRG 1 cut(s) 361
EcoRI GAATTC 1 cut(s) 343
FaeI CATG 1 cut(s) 709
FaiI YATR 9 cut(s) 48, 707, 783, 869, 956, 1008, 1010, 1047, 1219
FalI AAGNNNNNCTT 2 cut(s) 921, 953
FaqI GGGAC 1 cut(s) 1088
FatI CATG 1 cut(s) 705
FauI CCCGC 6 cut(s) 249, 359, 363, 1063, 1173, 1209
Fnu4HI GCNGC 6 cut(s) 52, 55, 306, 357, 600, 1032
FokI GGATG 2 cut(s) 804, 887
Fsp4HI GCNGC 6 cut(s) 52, 55, 306, 357, 600, 1032
FspBI CTAG 1 cut(s) 803
GlaI GCGC 1 cut(s) 480
GluI GCNGC 6 cut(s) 52, 55, 306, 357, 600, 1032
GsaI CCCAGC 1 cut(s) 236
HaeIII GGCC 3 cut(s) 356, 538, 1213
HapII CCGG 2 cut(s) 296, 564
HhaI GCGC 1 cut(s) 481
Hin1II CATG 1 cut(s) 709
Hin6I GCGC 1 cut(s) 479
HinP1I GCGC 1 cut(s) 479
HindIII AAGCTT 3 cut(s) 132, 683, 1097
HinfI GANTC 3 cut(s) 176, 993, 1147
HpaII CCGG 2 cut(s) 296, 564
Hpy166II GTNNAC 4 cut(s) 263, 529, 949, 1146
Hpy188III TCNNGA 3 cut(s) 456, 586, 821
Hpy8I GTNNAC 4 cut(s) 263, 529, 949, 1146
Hpy99I CGWCG 4 cut(s) 125, 397, 415, 424
HpyAV CCTTC 4 cut(s) 127, 504, 1031, 1075
HpyCH4III ACNGT 1 cut(s) 676
HpyCH4IV ACGT 2 cut(s) 123, 531
HpyCH4V TGCA 5 cut(s) 752, 831, 878, 1045, 1093
HpyF10VI GCNNNNNNNGC 8 cut(s) 94, 281, 305, 356, 749, 975, 1051, 1210
HpyF3I CTNAG 4 cut(s) 201, 835, 1152, 1208
HpySE526I ACGT 2 cut(s) 123, 531
Hsp92II CATG 1 cut(s) 709
HspAI GCGC 1 cut(s) 479
KroI GCCGGC 1 cut(s) 295
KroNI GCCGGC 1 cut(s) 297
Kzo9I GATC 4 cut(s) 582, 631, 727, 1103
LmnI GCTCC 1 cut(s) 24
Lsp1109I GCAGC 5 cut(s) 41, 63, 292, 586, 1018
LweI GCATC 3 cut(s) 826, 840, 865
MaeI CTAG 1 cut(s) 803
MaeII ACGT 2 cut(s) 123, 531
MaeIII GTNAC 1 cut(s) 428
MalI GATC 4 cut(s) 584, 633, 729, 1105
MbiI CCGCTC 1 cut(s) 1180
MboI GATC 4 cut(s) 582, 631, 727, 1103
MboII GAAGA 6 cut(s) 68, 396, 399, 920, 941, 1205
MflI RGATCY 2 cut(s) 727, 1103
MhlI GDGCHC 2 cut(s) 213, 718
MluCI AATT 5 cut(s) 104, 142, 343, 920, 1161
MlyI GAGTC 2 cut(s) 170, 1141
MmeI TCCRAC 2 cut(s) 46, 360
MroNI GCCGGC 1 cut(s) 295
MroXI GAANNNNTTC 1 cut(s) 386
MseI TTAA 3 cut(s) 269, 732, 891
MslI CAYNNNNRTG 1 cut(s) 37
MspA1I CMGCKG 1 cut(s) 54
MspI CCGG 2 cut(s) 296, 564
MspR9I CCNGG 1 cut(s) 565
MvnI CGCG 2 cut(s) 397, 479
MwoI GCNNNNNNNGC 8 cut(s) 94, 281, 305, 356, 749, 975, 1051, 1210
NaeI GCCGGC 1 cut(s) 297
NciI CCSGG 1 cut(s) 565
NdeII GATC 4 cut(s) 582, 631, 727, 1103
NgoMIV GCCGGC 1 cut(s) 295
NlaIII CATG 1 cut(s) 709
NlaIV GGNNCC 4 cut(s) 438, 562, 623, 1105
NmeAIII GCCGAG 1 cut(s) 465
PceI AGGCCT 1 cut(s) 1213
PcsI WCGNNNNNNNCGW 4 cut(s) 398, 407, 416, 419
PdiI GCCGGC 1 cut(s) 297
PdmI GAANNNNTTC 1 cut(s) 386
PfeI GAWTC 1 cut(s) 993
PflMI CCANNNNNTGG 1 cut(s) 545
PkrI GCNGC 6 cut(s) 53, 56, 307, 358, 601, 1033
PleI GAGTC 2 cut(s) 170, 1141
PpsI GAGTC 2 cut(s) 170, 1141
PshAI GACNNNNGTC 1 cut(s) 938
PspFI CCCAGC 1 cut(s) 232
PspN4I GGNNCC 4 cut(s) 438, 562, 623, 1105
PspPI GGNCC 2 cut(s) 536, 636
PstI CTGCAG 1 cut(s) 754
PsuI RGATCY 2 cut(s) 727, 1103
PvuII CAGCTG 1 cut(s) 54
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
RseI CAYNNNNRTG 1 cut(s) 37
Rsr2I CGGWCCG 1 cut(s) 636
RsrII CGGWCCG 1 cut(s) 636
SaqAI TTAA 3 cut(s) 269, 732, 891
SatI GCNGC 6 cut(s) 52, 55, 306, 357, 600, 1032
Sau3AI GATC 4 cut(s) 582, 631, 727, 1103
Sau96I GGNCC 2 cut(s) 536, 636
SchI GAGTC 2 cut(s) 170, 1141
ScrFI CCNGG 1 cut(s) 565
SduI GDGCHC 2 cut(s) 213, 718
SfaNI GCATC 3 cut(s) 826, 840, 865
SfcI CTRYAG 1 cut(s) 750
SinI GGWCC 1 cut(s) 636
SmiMI CAYNNNNRTG 1 cut(s) 37
SmlI CTYRAG 3 cut(s) 245, 278, 680
SmoI CTYRAG 3 cut(s) 245, 278, 680
Sse9I AATT 5 cut(s) 104, 142, 343, 920, 1161
SseBI AGGCCT 1 cut(s) 1213
SspI AATATT 1 cut(s) 1125
SspMI CTAG 1 cut(s) 803
StuI AGGCCT 1 cut(s) 1213
StyD4I CCNGG 1 cut(s) 563
TaaI ACNGT 1 cut(s) 676
TaiI ACGT 2 cut(s) 126, 534
TaqI TCGA 3 cut(s) 120, 422, 569
TaqII GACCGA 1 cut(s) 624
TasI AATT 5 cut(s) 104, 142, 343, 920, 1161
TauI GCSGC 1 cut(s) 359
TfiI GAWTC 1 cut(s) 993
Tru1I TTAA 3 cut(s) 269, 732, 891
Tru9I TTAA 3 cut(s) 269, 732, 891
TscAI CASTG 1 cut(s) 517
TseI GCWGC 5 cut(s) 51, 54, 305, 599, 1031
TspDTI ATGAA 2 cut(s) 834, 1173
TspRI CASTG 1 cut(s) 517
Van91I CCANNNNNTGG 1 cut(s) 545
VpaK11BI GGWCC 1 cut(s) 636
XapI RAATTY 3 cut(s) 104, 343, 920
XcmI CCANNNNNNNNNTGG 1 cut(s) 986
XmnI GAANNNNTTC 1 cut(s) 386
XspI CTAG 1 cut(s) 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.