Rh6BG085400

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000368
Physical Location & Seq
Forward (+)
13346387 .. 13348457
2071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG085400.1

Sequence Viewer

Length: 444 bp
ATGGAGTCTAAAGGTGGTAAAAAGTCTAGCAGTGGTAAATCCTTATTCTACGAAGCACCTCTCGGATACAGCATTGAAGCCGTTCGACCCAACGGTGGAATCAAGAAGTTCAGATCTGCTGCGTACTCCAACGTTATACGAAAATCCGAGATAGAGGATGCAGAGGAATGCTTCAAACTATTTTCTTTGCAAGAGGCGGCTAAATTTGACGAAGTGACCCTTGCCAATGTGAACAACTTCAAAAAGTGCTCAAAAAGCCAGTCACCTAATGCAATCCACAAAGAATATTTAGTGGTTACAATTCTGGTGGCTACTGATGGAGAACAGAAGTTGCCCACCATCAGTGGCACTCGTGACTTCAAGAAAGCATTACATAAACTTGGAGCCATTTCCTCGAACAAAATAATGATGATTTCTTCCAAGGAAGCAAGCTGCTTGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

147

Amino Acids

16.07

Weight (kDa)

9.32

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AdoMetDC_leader PF08132 1 - 48 2e-26 S-adenosyl-l-methionine decarboxylase leader peptide
DUF1517 PF07466 42 - 137 7.6e-20 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 197
AclI AACGTT 1 cut(s) 132
AcsI RAATTY 1 cut(s) 203
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 4 cut(s) 77, 175, 241, 361
AluBI AGCT 1 cut(s) 432
AluI AGCT 1 cut(s) 432
Alw21I GWGCWC 1 cut(s) 251
ApeKI GCWGC 2 cut(s) 119, 432
ApoI RAATTY 1 cut(s) 203
ArsI GACNNNNNNTTYG 2 cut(s) 245, 277
Asp700I GAANNNNTTC 2 cut(s) 81, 236
AsuHPI GGTGA 1 cut(s) 255
BauI CACGAG 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 2 cut(s) 106, 419
BccI CCATC 2 cut(s) 311, 347
BceAI ACGGC 1 cut(s) 65
BciVI GTATCC 1 cut(s) 59
BfaI CTAG 1 cut(s) 27
BfuI GTATCC 1 cut(s) 59
BglII AGATCT 1 cut(s) 113
BisI GCNGC 3 cut(s) 120, 198, 433
BlsI GCNGC 3 cut(s) 121, 199, 434
BmiI GGNNCC 1 cut(s) 385
BmsI GCATC 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 420
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 420
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 259
BseXI GCAGC 2 cut(s) 106, 419
BsiHKAI GWGCWC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 95
BsmI GAATGC 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 1 cut(s) 113
BspACI CCGC 1 cut(s) 197
BspLI GGNNCC 1 cut(s) 385
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 1 cut(s) 113
BssSI CACGAG 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 420
Bst2BI CACGAG 1 cut(s) 351
Bst4CI ACNGT 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 430
BstF5I GGATG 1 cut(s) 163
BstKTI GATC 1 cut(s) 116
BstMBI GATC 1 cut(s) 113
BstMWI GCNNNNNNNGC 1 cut(s) 255
BstV1I GCAGC 2 cut(s) 106, 419
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BsuI GTATCC 1 cut(s) 59
BtsCI GGATG 1 cut(s) 163
BtsI GCAGTG 1 cut(s) 37
BtsIMutI CAGTG 2 cut(s) 37, 349
Cac8I GCNNGC 1 cut(s) 430
Csp6I GTAC 1 cut(s) 124
CspCI CAANNNNNGTGG 2 cut(s) 288, 323
CviJI RGCY 6 cut(s) 80, 200, 258, 311, 386, 432
CviKI_1 RGCY 6 cut(s) 80, 200, 258, 311, 386, 432
CviQI GTAC 1 cut(s) 124
DpnI GATC 1 cut(s) 115
DpnII GATC 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 420
EcoT14I CCWWGG 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 420
FaiI YATR 3 cut(s) 137, 375, 442
FalI AAGNNNNNCTT 2 cut(s) 204, 236
Fnu4HI GCNGC 3 cut(s) 120, 198, 433
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 3 cut(s) 120, 198, 433
FspBI CTAG 1 cut(s) 27
GluI GCNGC 3 cut(s) 120, 198, 433
HinfI GANTC 2 cut(s) 5, 99
HphI GGTGA 1 cut(s) 255
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 3 cut(s) 65, 113, 148
Hpy188III TCNNGA 3 cut(s) 103, 353, 361
Hpy8I GTNNAC 1 cut(s) 232
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 3 cut(s) 161, 190, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 255
HpySE526I ACGT 1 cut(s) 132
Kzo9I GATC 1 cut(s) 113
LmnI GCTCC 1 cut(s) 383
LpnPI CCDG 2 cut(s) 272, 290
Lsp1109I GCAGC 2 cut(s) 106, 419
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 4 cut(s) 214, 261, 295, 353
MalI GATC 1 cut(s) 115
MboI GATC 1 cut(s) 113
MboII GAAGA 1 cut(s) 408
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 2 cut(s) 203, 300
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 5 cut(s) 69, 148, 157, 187, 403
MroXI GAANNNNTTC 2 cut(s) 81, 236
Mva1269I GAATGC 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 255
NdeII GATC 1 cut(s) 113
NlaIV GGNNCC 1 cut(s) 385
NmuCI GTSAC 3 cut(s) 214, 261, 353
PctI GAATGC 1 cut(s) 173
PdmI GAANNNNTTC 2 cut(s) 81, 236
PfeI GAWTC 1 cut(s) 99
PkrI GCNGC 3 cut(s) 121, 199, 434
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp1406I AACGTT 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 385
PsuI RGATCY 1 cut(s) 113
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SatI GCNGC 3 cut(s) 120, 198, 433
Sau3AI GATC 1 cut(s) 113
SchI GAGTC 1 cut(s) 14
SduI GDGCHC 1 cut(s) 251
SetI ASST 5 cut(s) 16, 61, 135, 268, 434
SfaNI GCATC 1 cut(s) 148
Sse9I AATT 2 cut(s) 203, 300
SsiI CCGC 1 cut(s) 197
SspI AATATT 1 cut(s) 287
SspMI CTAG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 1 cut(s) 135
TaqI TCGA 2 cut(s) 85, 395
TasI AATT 2 cut(s) 203, 300
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 1 cut(s) 99
TscAI CASTG 2 cut(s) 37, 349
TseFI GTSAC 3 cut(s) 214, 261, 353
TseI GCWGC 2 cut(s) 119, 432
Tsp45I GTSAC 3 cut(s) 214, 261, 353
TspRI CASTG 2 cut(s) 37, 349
XapI RAATTY 1 cut(s) 203
XmnI GAANNNNTTC 2 cut(s) 81, 236
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.