Rmu_sc0001358.1_g000002

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001358.1
OG0000368
Physical Location & Seq
Reverse (-)
4720 .. 8799
4080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001358.1_g000002.1.cds

Sequence Viewer

Length: 672 bp
atggaggatgcggagaaatgcttcaataaaatttctattgaagagagggctaaatttgatgaagagacgcttgtcaacgtgaacaaccaaaaaagaaaaagctcgacaagcaaggctgatgatggattccaaaacgaatatatagtggtgacattattagttgcgattgaagggaggcataagttgcccaccatcaatggcagcgctgacttgaaggaagcattgaaaagtctcggatccattccttcaaagaatatactgcctccggagggcggtgcggtggaagccgatctaggtcatcctcctcgaggttcaggtcgtcctcgtcaagctacaggtggcggtcgtcatcagggtcaaaaggcaaaaacagctttgcttcgaaattctgattattggatatcaagttatttatctgtgactccaagtcaaaacatagcagatgcagagaaatgcttcaataaaatttcagttgaagagagggccaaatttgatgaagaaactcttgttaatgttacactattggtcgctactgaaggcgagcatatgttgcccaccatgaatggcagggctgagttaaaggcagcattaatgcaaagcctcaaatacattacctcaaagaatataatagcaactgaagtgtacgttatggactccacagcaagaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

223

Amino Acids

24.48

Weight (kDa)

6.92

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 306
AccIII TCCGGA 1 cut(s) 265
AciI CCGC 4 cut(s) 11, 273, 278, 342
AclWI GGATC 2 cut(s) 231, 244
AcsI RAATTY 5 cut(s) 30, 53, 385, 465, 488
AcuI CTGAAG 2 cut(s) 555, 657
AfaI GTAC 1 cut(s) 644
AfeI AGCGCT 1 cut(s) 205
AfiI CCNNNNNNNGG 3 cut(s) 269, 272, 308
AgsI TTSAA 8 cut(s) 25, 41, 170, 214, 226, 249, 460, 476
AhdI GACNNNNNGTC 1 cut(s) 426
AluBI AGCT 3 cut(s) 102, 332, 374
AluI AGCT 3 cut(s) 102, 332, 374
Alw26I GTCTC 2 cut(s) 59, 236
AlwI GGATC 2 cut(s) 231, 244
Ama87I CYCGRG 1 cut(s) 306
Aor13HI TCCGGA 1 cut(s) 265
Aor51HI AGCGCT 1 cut(s) 205
AoxI GGCC 1 cut(s) 483
ApeKI GCWGC 2 cut(s) 201, 584
ApoI RAATTY 5 cut(s) 30, 53, 385, 465, 488
AseI ATTAAT 1 cut(s) 590
Asp700I GAANNNNTTC 2 cut(s) 20, 455
AspLEI GCGC 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 483
AsuHPI GGTGA 1 cut(s) 160
AsuII TTCGAA 1 cut(s) 382
AvaI CYCGRG 1 cut(s) 306
BamHI GGATCC 1 cut(s) 236
BbvI GCAGC 2 cut(s) 213, 596
BccI CCATC 2 cut(s) 116, 200
BcoDI GTCTC 2 cut(s) 59, 236
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 333
BfoI RGCGCY 1 cut(s) 207
BisI GCNGC 2 cut(s) 202, 585
BlsI GCNGC 2 cut(s) 203, 586
BmeRI GACNNNNNGTC 1 cut(s) 426
BmeT110I CYCGRG 1 cut(s) 306
BmgT120I GGNCC 1 cut(s) 483
BmiI GGNNCC 1 cut(s) 238
BmsI GCATC 1 cut(s) 433
BoxI GACNNNNGTC 1 cut(s) 71
Bpu14I TTCGAA 1 cut(s) 382
BsaWI WCCGGW 1 cut(s) 265
Bsc4I CCNNNNNNNGG 3 cut(s) 269, 272, 308
BseAI TCCGGA 1 cut(s) 265
BseGI GGATG 2 cut(s) 13, 298
BseLI CCNNNNNNNGG 3 cut(s) 269, 272, 308
BseMII CTCAG 1 cut(s) 564
BseRI GAGGAG 1 cut(s) 294
BseXI GCAGC 2 cut(s) 213, 596
Bsh1285I CGRYCG 1 cut(s) 346
BshFI GGCC 1 cut(s) 485
BsiEI CGRYCG 1 cut(s) 346
BsiHKCI CYCGRG 1 cut(s) 306
BsiSI CCGG 1 cut(s) 266
BslI CCNNNNNNNGG 3 cut(s) 269, 272, 308
BsmAI GTCTC 2 cut(s) 59, 236
BsmBI CGTCTC 1 cut(s) 59
BsnI GGCC 1 cut(s) 485
BsoBI CYCGRG 1 cut(s) 306
Bsp119I TTCGAA 1 cut(s) 382
Bsp13I TCCGGA 1 cut(s) 265
Bsp143I GATC 2 cut(s) 236, 289
BspACI CCGC 4 cut(s) 11, 273, 278, 342
BspANI GGCC 1 cut(s) 485
BspCNI CTCAG 1 cut(s) 565
BspEI TCCGGA 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 238
BspPI GGATC 2 cut(s) 231, 244
BspT104I TTCGAA 1 cut(s) 382
BssMI GATC 2 cut(s) 236, 289
Bst6I CTCTTC 3 cut(s) 36, 57, 471
BstAPI GCANNNNNTGC 2 cut(s) 184, 550
BstBI TTCGAA 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 542
BstDEI CTNAG 1 cut(s) 573
BstENI CCTNNNNNAGG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 13, 298
BstH2I RGCGCY 1 cut(s) 207
BstHHI GCGC 1 cut(s) 206
BstKTI GATC 2 cut(s) 239, 292
BstMAI GTCTC 2 cut(s) 59, 236
BstMBI GATC 2 cut(s) 236, 289
BstMCI CGRYCG 1 cut(s) 346
BstMWI GCNNNNNNNGC 5 cut(s) 108, 184, 284, 371, 550
BstPAI GACNNNNGTC 1 cut(s) 71
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 2 cut(s) 213, 596
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
BsuRI GGCC 1 cut(s) 485
BtsCI GGATG 2 cut(s) 13, 298
Cac8I GCNNGC 1 cut(s) 542
CfoI GCGC 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 483
CseI GACGC 1 cut(s) 76
Csp6I GTAC 1 cut(s) 643
CviAII CATG 1 cut(s) 559
CviJI RGCY 9 cut(s) 50, 102, 116, 287, 332, 374, 485, 572, 600
CviKI_1 RGCY 9 cut(s) 50, 102, 116, 287, 332, 374, 485, 572, 600
CviQI GTAC 1 cut(s) 643
DdeI CTNAG 1 cut(s) 573
DpnI GATC 2 cut(s) 238, 291
DpnII GATC 2 cut(s) 236, 289
DriI GACNNNNNGTC 1 cut(s) 426
Eam1104I CTCTTC 3 cut(s) 36, 57, 471
Eam1105I GACNNNNNGTC 1 cut(s) 426
EarI CTCTTC 3 cut(s) 36, 57, 471
Eco32I GATATC 1 cut(s) 402
Eco47III AGCGCT 1 cut(s) 205
Eco57I CTGAAG 2 cut(s) 555, 657
Eco88I CYCGRG 1 cut(s) 306
EcoNI CCTNNNNNAGG 1 cut(s) 306
EcoRV GATATC 1 cut(s) 402
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 1 cut(s) 562
FalI AAGNNNNNCTT 4 cut(s) 54, 86, 489, 521
FatI CATG 1 cut(s) 558
FauNDI CATATG 1 cut(s) 546
Fnu4HI GCNGC 2 cut(s) 202, 585
FokI GGATG 2 cut(s) 20, 285
Fsp4HI GCNGC 2 cut(s) 202, 585
FspBI CTAG 1 cut(s) 293
GlaI GCGC 1 cut(s) 205
GluI GCNGC 2 cut(s) 202, 585
HaeII RGCGCY 1 cut(s) 207
HaeIII GGCC 1 cut(s) 485
HapII CCGG 1 cut(s) 266
HgaI GACGC 1 cut(s) 76
HhaI GCGC 1 cut(s) 206
Hin1II CATG 1 cut(s) 562
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 3 cut(s) 126, 421, 653
HpaII CCGG 1 cut(s) 266
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 3 cut(s) 76, 82, 643
Hpy188I TCNGA 2 cut(s) 236, 391
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 3 cut(s) 76, 82, 643
HpyAV CCTTC 4 cut(s) 164, 208, 255, 530
HpyCH4IV ACGT 2 cut(s) 78, 645
HpyCH4V TGCA 2 cut(s) 446, 595
HpyF10VI GCNNNNNNNGC 5 cut(s) 108, 184, 284, 371, 550
HpyF3I CTNAG 1 cut(s) 573
HpySE526I ACGT 2 cut(s) 78, 645
Hsp92II CATG 1 cut(s) 562
HspAI GCGC 1 cut(s) 204
Kpn2I TCCGGA 1 cut(s) 265
Kzo9I GATC 2 cut(s) 236, 289
LpnPI CCDG 5 cut(s) 279, 300, 321, 338, 553
Lsp1109I GCAGC 2 cut(s) 213, 596
LweI GCATC 1 cut(s) 433
MaeI CTAG 1 cut(s) 293
MaeII ACGT 2 cut(s) 78, 645
MaeIII GTNAC 3 cut(s) 148, 418, 514
MalI GATC 2 cut(s) 238, 291
MboI GATC 2 cut(s) 236, 289
MboII GAAGA 4 cut(s) 53, 74, 488, 509
MflI RGATCY 1 cut(s) 236
MluCI AATT 5 cut(s) 30, 53, 385, 465, 488
MlyI GAGTC 2 cut(s) 415, 647
MroI TCCGGA 1 cut(s) 265
MroXI GAANNNNTTC 2 cut(s) 20, 455
MseI TTAA 3 cut(s) 510, 578, 590
MspI CCGG 1 cut(s) 266
MwoI GCNNNNNNNGC 5 cut(s) 108, 184, 284, 371, 550
NdeI CATATG 1 cut(s) 546
NdeII GATC 2 cut(s) 236, 289
NlaIII CATG 1 cut(s) 562
NlaIV GGNNCC 1 cut(s) 238
NmuCI GTSAC 2 cut(s) 148, 418
NspV TTCGAA 1 cut(s) 382
PaeR7I CTCGAG 1 cut(s) 306
PdmI GAANNNNTTC 2 cut(s) 20, 455
PfeI GAWTC 1 cut(s) 126
PkrI GCNGC 2 cut(s) 203, 586
PleI GAGTC 2 cut(s) 415, 647
PpsI GAGTC 2 cut(s) 415, 647
PshAI GACNNNNGTC 1 cut(s) 71
PshBI ATTAAT 1 cut(s) 590
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 483
PspXI VCTCGAGB 1 cut(s) 306
PsuI RGATCY 1 cut(s) 236
RsaI GTAC 1 cut(s) 644
RsaNI GTAC 1 cut(s) 643
SaqAI TTAA 3 cut(s) 510, 578, 590
SatI GCNGC 2 cut(s) 202, 585
Sau3AI GATC 2 cut(s) 236, 289
Sau96I GGNCC 1 cut(s) 483
SchI GAGTC 2 cut(s) 415, 647
SfaNI GCATC 1 cut(s) 433
SfcI CTRYAG 1 cut(s) 333
Sfr274I CTCGAG 1 cut(s) 306
SfuI TTCGAA 1 cut(s) 382
SlaI CTCGAG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
Sse9I AATT 5 cut(s) 30, 53, 385, 465, 488
SsiI CCGC 4 cut(s) 11, 273, 278, 342
SspMI CTAG 1 cut(s) 293
TaiI ACGT 2 cut(s) 81, 648
TaqI TCGA 3 cut(s) 104, 307, 382
TasI AATT 5 cut(s) 30, 53, 385, 465, 488
TfiI GAWTC 1 cut(s) 126
Tru1I TTAA 3 cut(s) 510, 578, 590
Tru9I TTAA 3 cut(s) 510, 578, 590
TseFI GTSAC 2 cut(s) 148, 418
TseI GCWGC 2 cut(s) 201, 584
Tsp45I GTSAC 2 cut(s) 148, 418
TspDTI ATGAA 3 cut(s) 75, 510, 575
VspI ATTAAT 1 cut(s) 590
XagI CCTNNNNNAGG 1 cut(s) 306
XapI RAATTY 5 cut(s) 30, 53, 385, 465, 488
XhoI CTCGAG 1 cut(s) 306
XmnI GAANNNNTTC 2 cut(s) 20, 455
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.