Rh6DG400800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000368
Physical Location & Seq
Reverse (-)
58978006 .. 58978200
195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG400800.1

Sequence Viewer

Length: 195 bp
ATGGATGAAACTGAAGCCAAAGGAAAAGACACCAGTCGCGATCCCAACCGCGATCTAAATCCATCGGTGCTCAGCCCAAGTGATACAGAGGAAGAAAGCGAAGAAGAAAACATGGCAGAAGCCGGCTGCCAAAGGAAAAGACACCAGTCGCGATCCCAACCGCGATCTAAATCCATCGGTGCTCAGCCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.16

Weight (kDa)

5.09

Isoelectric Point (pI)

89.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 39, 51, 151, 163
AciI CCGC 2 cut(s) 49, 161
AclWI GGATC 2 cut(s) 35, 147
AcuI CTGAAG 1 cut(s) 33
Alw21I GWGCWC 2 cut(s) 72, 184
AlwI GGATC 2 cut(s) 35, 147
ApeKI GCWGC 1 cut(s) 126
Bbv12I GWGCWC 2 cut(s) 72, 184
BbvI GCAGC 1 cut(s) 113
BccI CCATC 2 cut(s) 70, 182
BisI GCNGC 1 cut(s) 127
BlpI GCTNAGC 2 cut(s) 71, 183
BlsI GCNGC 1 cut(s) 128
BoxI GACNNNNGTC 2 cut(s) 33, 145
Bpu1102I GCTNAGC 2 cut(s) 71, 183
BsaBI GATNNNNATC 2 cut(s) 57, 169
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 2 cut(s) 33, 145
Bse8I GATNNNNATC 2 cut(s) 57, 169
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 2 cut(s) 57, 169
BseMII CTCAG 1 cut(s) 85
BseNI ACTGG 2 cut(s) 33, 145
BseXI GCAGC 1 cut(s) 113
Bsh1236I CGCG 4 cut(s) 39, 51, 151, 163
BsiHKAI GWGCWC 2 cut(s) 72, 184
BsiSI CCGG 1 cut(s) 123
Bsp1286I GDGCHC 2 cut(s) 72, 184
Bsp143I GATC 4 cut(s) 40, 52, 152, 164
Bsp1720I GCTNAGC 2 cut(s) 71, 183
Bsp68I TCGCGA 2 cut(s) 39, 151
BspACI CCGC 2 cut(s) 49, 161
BspCNI CTCAG 1 cut(s) 84
BspFNI CGCG 4 cut(s) 39, 51, 151, 163
BspPI GGATC 2 cut(s) 35, 147
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 2 cut(s) 33, 145
BssAI RCCGGY 1 cut(s) 122
BssMI GATC 4 cut(s) 40, 52, 152, 164
BstC8I GCNNGC 1 cut(s) 124
BstDEI CTNAG 2 cut(s) 71, 183
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 4 cut(s) 39, 51, 151, 163
BstKTI GATC 4 cut(s) 43, 55, 155, 167
BstMBI GATC 4 cut(s) 40, 52, 152, 164
BstPAI GACNNNNGTC 2 cut(s) 33, 145
BstUI CGCG 4 cut(s) 39, 51, 151, 163
BstV1I GCAGC 1 cut(s) 113
BtsCI GGATG 1 cut(s) 10
BtuMI TCGCGA 2 cut(s) 39, 151
Cac8I GCNNGC 1 cut(s) 124
Cfr10I RCCGGY 1 cut(s) 122
CviAII CATG 1 cut(s) 112
CviJI RGCY 5 cut(s) 17, 75, 122, 126, 187
CviKI_1 RGCY 5 cut(s) 17, 75, 122, 126, 187
DdeI CTNAG 2 cut(s) 71, 183
DpnI GATC 4 cut(s) 42, 54, 154, 166
DpnII GATC 4 cut(s) 40, 52, 152, 164
Eco57I CTGAAG 1 cut(s) 33
FaeI CATG 1 cut(s) 115
FaiI YATR 1 cut(s) 113
FatI CATG 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 127
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 127
GluI GCNGC 1 cut(s) 127
HapII CCGG 1 cut(s) 123
Hin1II CATG 1 cut(s) 115
HpaII CCGG 1 cut(s) 123
Hpy188III TCNNGA 2 cut(s) 38, 150
HpyF3I CTNAG 2 cut(s) 71, 183
Hsp92II CATG 1 cut(s) 115
KroI GCCGGC 1 cut(s) 122
KroNI GCCGGC 1 cut(s) 124
Kzo9I GATC 4 cut(s) 40, 52, 152, 164
LpnPI CCDG 3 cut(s) 46, 136, 158
Lsp1109I GCAGC 1 cut(s) 113
MalI GATC 4 cut(s) 42, 54, 154, 166
MboI GATC 4 cut(s) 40, 52, 152, 164
MboII GAAGA 3 cut(s) 104, 113, 116
MhlI GDGCHC 2 cut(s) 72, 184
MnlI CCTC 1 cut(s) 82
MroNI GCCGGC 1 cut(s) 122
MspI CCGG 1 cut(s) 123
MvnI CGCG 4 cut(s) 39, 51, 151, 163
NaeI GCCGGC 1 cut(s) 124
NdeII GATC 4 cut(s) 40, 52, 152, 164
NgoMIV GCCGGC 1 cut(s) 122
NlaIII CATG 1 cut(s) 115
NruI TCGCGA 2 cut(s) 39, 151
PdiI GCCGGC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 128
PshAI GACNNNNGTC 2 cut(s) 33, 145
RruI TCGCGA 2 cut(s) 39, 151
SatI GCNGC 1 cut(s) 127
Sau3AI GATC 4 cut(s) 40, 52, 152, 164
SduI GDGCHC 2 cut(s) 72, 184
SgeI CNNG 9 cut(s) 45, 50, 62, 90, 124, 135, 157, 162, 174
SsiI CCGC 2 cut(s) 49, 161
TseI GCWGC 1 cut(s) 126
TspDTI ATGAA 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.