FvH4_6g03520

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000368
Physical Location & Seq
Reverse (-)
1930612 .. 1933935
3324 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03520.t1

Sequence Viewer

Length: 987 bp
ATGGCGTTTAGAAATCCGGCCACCGTCGCCGTCGTAATTCTCGCTCTGGTCTTGATTTCCGACTCGAATTTCGCGTCGGCCGCTTCGGGTGGGCAGTCCGGCGGAAGCTTGTTCCCCTCCGGCGGAGGTTCGTCTTCGTCTTCATCGGGGTCTTCGGGTTCATCGGACTCTTCTTGGTCGTGGGACCACCACCACTCGCCGTCGTCGGGTTCCTTGACGGACGGCGGATTCTACGGCTTCTTGCTTTTCATGGCGGTTATTGTTGGGGTTTTAGTCATCTGTCATTGTGCTGGAGTTGGGAAACTAAGCGTCGTCAAGCTTCAGGTTGGTCTGGTGGGCAAGGCGCCATCGCTTCAAAAGGATCTTAATCGACTTACTGAAACTACAGATATGTCTACAGCTACGGGTTTGAGTCATCTTTTGACAGGGGCATCAACATCTTTGCTTCGCAATCTTGATTATTGCATCTCAAGTTATTCATCAGTTACTCGGAAGTCTGAGATGGAAGATGCAGAGCAATGCTTCAAACAACTTTCCATGAGAGAAGCGGCTAAATTTTCCAAAGTTACGCTTTCCAATGTGAACAACTTTATAGTGAGATCGACAATCCCGGCACCAAATGTAGTCCACAAAGAATATATAGTGGTTACAATTTTGGTGTCTACTCGGGGAGCACAAAAGTTACCCAGCATCAATGGCCGTGCCGATTTGAAGAAAGCATTACAGAGTCTTGGATCCATTCCCTCGAGCAAACTACTGGCGGTTGAGGTCTTATGGACTCCTCAACAGGAAAATGATACATTGACTGAGAAGGAACTACTTAGAGATTACCTGCATTTGAGGGGATTTTATGATCCAGGGTCACTTGAAGAAGGGTCATATGACGATTCCTACCCGTTCTTAGGGGTTACTGTAGACAAGGACTATTTTGATGCCAGTCAAACCCACGAGCCAGTAGATGTTGCTAGTCAAGGACTATTGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

329

Amino Acids

34.91

Weight (kDa)

5.61

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 102 - 281 3.1e-57 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 840
AccB1I GGYRCC 2 cut(s) 343, 613
AccI GTMKAC 3 cut(s) 395, 662, 915
AccII CGCG 1 cut(s) 74
AciI CCGC 7 cut(s) 81, 102, 123, 225, 254, 548, 761
AclWI GGATC 4 cut(s) 369, 729, 742, 848
AcoI YGGCCR 3 cut(s) 18, 78, 697
AcsI RAATTY 2 cut(s) 67, 554
AcuI CTGAAG 1 cut(s) 305
AcyI GRCGYC 1 cut(s) 344
AfiI CCNNNNNNNGG 3 cut(s) 122, 206, 902
AgsI TTSAA 4 cut(s) 356, 526, 712, 869
AjnI CCWGG 1 cut(s) 856
AluBI AGCT 3 cut(s) 108, 319, 401
AluI AGCT 3 cut(s) 108, 319, 401
Alw21I GWGCWC 1 cut(s) 676
AlwI GGATC 4 cut(s) 369, 729, 742, 848
Ama87I CYCGRG 2 cut(s) 666, 745
AoxI GGCC 3 cut(s) 18, 78, 697
ApoI RAATTY 2 cut(s) 67, 554
ArsI GACNNNNNNTTYG 4 cut(s) 53, 59, 85, 91
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 1 cut(s) 184
AsuC2I CCSGG 1 cut(s) 611
AvaI CYCGRG 2 cut(s) 666, 745
AvaII GGWCC 1 cut(s) 184
BamHI GGATCC 1 cut(s) 734
BanI GGYRCC 2 cut(s) 343, 613
BauI CACGAG 1 cut(s) 947
BbsI GAAGAC 3 cut(s) 126, 132, 144
Bbv12I GWGCWC 1 cut(s) 676
BccI CCATC 2 cut(s) 355, 496
BceAI ACGGC 5 cut(s) 14, 184, 238, 250, 684
BciT130I CCWGG 1 cut(s) 858
BcnI CCSGG 1 cut(s) 611
BfaI CTAG 1 cut(s) 966
BfmI CTRYAG 3 cut(s) 384, 396, 912
BfoI RGCGCY 1 cut(s) 347
BfuAI ACCTGC 1 cut(s) 840
BisI GCNGC 2 cut(s) 81, 549
BlsI GCNGC 2 cut(s) 82, 550
Bme1390I CCNGG 2 cut(s) 611, 858
Bme18I GGWCC 1 cut(s) 184
BmeT110I CYCGRG 2 cut(s) 666, 745
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 5 cut(s) 185, 211, 345, 615, 736
BmrFI CCNGG 2 cut(s) 611, 858
BmsI GCATC 5 cut(s) 440, 474, 499, 699, 922
BpiI GAAGAC 3 cut(s) 126, 132, 144
BpmI CTGGAG 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 454
BpuMI CCSGG 1 cut(s) 611
BsaBI GATNNNNATC 1 cut(s) 366
BsaHI GRCGYC 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 857
Bsc4I CCNNNNNNNGG 3 cut(s) 122, 206, 902
Bse1I ACTGG 3 cut(s) 762, 936, 953
Bse3DI GCAATG 1 cut(s) 524
Bse8I GATNNNNATC 1 cut(s) 366
BseBI CCWGG 1 cut(s) 858
BseDI CCNNGG 1 cut(s) 857
BseJI GATNNNNATC 1 cut(s) 366
BseLI CCNNNNNNNGG 3 cut(s) 122, 206, 902
BseMI GCAATG 1 cut(s) 524
BseMII CTCAG 2 cut(s) 489, 798
BseNI ACTGG 3 cut(s) 762, 936, 953
BseRI GAGGAG 1 cut(s) 771
BseX3I CGGCCG 1 cut(s) 78
BseYI CCCAGC 1 cut(s) 686
Bsh1236I CGCG 1 cut(s) 74
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 3 cut(s) 20, 80, 699
BshNI GGYRCC 2 cut(s) 343, 613
BsiEI CGRYCG 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 676
BsiHKCI CYCGRG 2 cut(s) 666, 745
BsiSI CCGG 4 cut(s) 17, 99, 120, 611
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 3 cut(s) 122, 206, 902
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 3 cut(s) 20, 80, 699
BsoBI CYCGRG 2 cut(s) 666, 745
Bsp1286I GDGCHC 1 cut(s) 676
Bsp143I GATC 4 cut(s) 361, 599, 734, 853
BspACI CCGC 7 cut(s) 81, 102, 123, 225, 254, 548, 761
BspANI GGCC 3 cut(s) 20, 80, 699
BspCNI CTCAG 2 cut(s) 490, 799
BspFNI CGCG 1 cut(s) 74
BspLI GGNNCC 5 cut(s) 185, 211, 345, 615, 736
BspMI ACCTGC 1 cut(s) 840
BspPI GGATC 4 cut(s) 369, 729, 742, 848
BspT107I GGYRCC 2 cut(s) 343, 613
BsrDI GCAATG 1 cut(s) 524
BsrI ACTGG 3 cut(s) 762, 936, 953
BssECI CCNNGG 1 cut(s) 857
BssMI GATC 4 cut(s) 361, 599, 734, 853
BssNI GRCGYC 1 cut(s) 344
BssSI CACGAG 1 cut(s) 947
Bst2BI CACGAG 1 cut(s) 947
Bst2UI CCWGG 1 cut(s) 858
Bst4CI ACNGT 2 cut(s) 25, 913
Bst6I CTCTTC 1 cut(s) 175
BstACI GRCGYC 1 cut(s) 344
BstDEI CTNAG 5 cut(s) 305, 498, 807, 821, 901
BstFNI CGCG 1 cut(s) 74
BstH2I RGCGCY 1 cut(s) 347
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 4 cut(s) 364, 602, 737, 856
BstMBI GATC 4 cut(s) 361, 599, 734, 853
BstMCI CGRYCG 1 cut(s) 81
BstMWI GCNNNNNNNGC 3 cut(s) 26, 80, 696
BstNI CCWGG 1 cut(s) 858
BstSCI CCNGG 2 cut(s) 609, 856
BstSFI CTRYAG 3 cut(s) 384, 396, 912
BstUI CGCG 1 cut(s) 74
BstV2I GAAGAC 3 cut(s) 126, 132, 144
BstX2I RGATCY 2 cut(s) 361, 734
BstYI RGATCY 2 cut(s) 361, 734
BstZI CGGCCG 1 cut(s) 78
BsuRI GGCC 3 cut(s) 20, 80, 699
BtgZI GCGATG 1 cut(s) 333
BveI ACCTGC 1 cut(s) 840
CfoI GCGC 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 184
CseI GACGC 2 cut(s) 63, 298
CviAII CATG 2 cut(s) 250, 538
CviJI RGCY 9 cut(s) 20, 80, 108, 237, 319, 401, 551, 699, 952
CviKI_1 RGCY 9 cut(s) 20, 80, 108, 237, 319, 401, 551, 699, 952
DdeI CTNAG 5 cut(s) 305, 498, 807, 821, 901
DinI GGCGCC 1 cut(s) 345
DpnI GATC 4 cut(s) 363, 601, 736, 855
DpnII GATC 4 cut(s) 361, 599, 734, 853
EaeI YGGCCR 3 cut(s) 18, 78, 697
EagI CGGCCG 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 175
EciI GGCGGA 3 cut(s) 117, 138, 240
EclXI CGGCCG 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 184
Eco52I CGGCCG 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 305
Eco88I CYCGRG 2 cut(s) 666, 745
EcoRII CCWGG 1 cut(s) 856
EgeI GGCGCC 1 cut(s) 345
EheI GGCGCC 1 cut(s) 345
FaeI CATG 2 cut(s) 253, 541
FalI AAGNNNNNCTT 2 cut(s) 555, 587
FaqI GGGAC 1 cut(s) 197
FatI CATG 2 cut(s) 249, 537
FauNDI CATATG 1 cut(s) 880
FblI GTMKAC 3 cut(s) 395, 662, 915
Fnu4HI GCNGC 2 cut(s) 81, 549
Fsp4HI GCNGC 2 cut(s) 81, 549
FspBI CTAG 1 cut(s) 966
GlaI GCGC 1 cut(s) 345
GluI GCNGC 2 cut(s) 81, 549
GsaI CCCAGC 1 cut(s) 690
GsuI CTGGAG 1 cut(s) 312
HaeII RGCGCY 1 cut(s) 347
HaeIII GGCC 3 cut(s) 20, 80, 699
HapII CCGG 4 cut(s) 17, 99, 120, 611
HgaI GACGC 2 cut(s) 63, 298
HhaI GCGC 1 cut(s) 346
Hin1I GRCGYC 1 cut(s) 344
Hin1II CATG 2 cut(s) 253, 541
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HindIII AAGCTT 2 cut(s) 106, 317
HinfI GANTC 7 cut(s) 62, 167, 228, 412, 727, 778, 887
HpaII CCGG 4 cut(s) 17, 99, 120, 611
Hpy166II GTNNAC 5 cut(s) 396, 583, 628, 663, 916
Hpy188I TCNGA 4 cut(s) 61, 166, 492, 499
Hpy188III TCNNGA 2 cut(s) 52, 455
Hpy8I GTNNAC 5 cut(s) 396, 583, 628, 663, 916
Hpy99I CGWCG 6 cut(s) 29, 35, 79, 205, 208, 314
HpyAV CCTTC 2 cut(s) 805, 866
HpyCH4III ACNGT 2 cut(s) 25, 913
HpyCH4V TGCA 3 cut(s) 465, 512, 835
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 80, 696
HpyF3I CTNAG 5 cut(s) 305, 498, 807, 821, 901
Hsp92I GRCGYC 1 cut(s) 344
Hsp92II CATG 2 cut(s) 253, 541
HspAI GCGC 1 cut(s) 344
KasI GGCGCC 1 cut(s) 343
Kzo9I GATC 4 cut(s) 361, 599, 734, 853
LmnI GCTCC 1 cut(s) 671
LweI GCATC 5 cut(s) 440, 474, 499, 699, 922
MaeI CTAG 1 cut(s) 966
MaeIII GTNAC 6 cut(s) 484, 565, 646, 681, 861, 907
MalI GATC 4 cut(s) 363, 601, 736, 855
MboI GATC 4 cut(s) 361, 599, 734, 853
MboII GAAGA 7 cut(s) 126, 132, 144, 162, 518, 724, 881
MflI RGATCY 2 cut(s) 361, 734
MhlI GDGCHC 1 cut(s) 676
MluCI AATT 4 cut(s) 36, 67, 554, 651
Mly113I GGCGCC 1 cut(s) 344
MlyI GAGTC 5 cut(s) 56, 161, 421, 736, 772
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 6 cut(s) 119, 127, 754, 760, 792, 834
MseI TTAA 1 cut(s) 366
MspI CCGG 4 cut(s) 17, 99, 120, 611
MspR9I CCNGG 2 cut(s) 611, 858
MvaI CCWGG 1 cut(s) 858
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 3 cut(s) 26, 80, 696
NarI GGCGCC 1 cut(s) 344
NciI CCSGG 1 cut(s) 611
NdeI CATATG 1 cut(s) 880
NdeII GATC 4 cut(s) 361, 599, 734, 853
NlaIII CATG 2 cut(s) 253, 541
NlaIV GGNNCC 5 cut(s) 185, 211, 345, 615, 736
NmuCI GTSAC 1 cut(s) 861
PaeR7I CTCGAG 1 cut(s) 745
PcsI WCGNNNNNNNCGW 1 cut(s) 71
PfeI GAWTC 2 cut(s) 228, 887
PkrI GCNGC 2 cut(s) 82, 550
PleI GAGTC 5 cut(s) 56, 161, 420, 735, 772
PluTI GGCGCC 1 cut(s) 347
PpsI GAGTC 5 cut(s) 56, 161, 420, 735, 772
Psp6I CCWGG 1 cut(s) 856
PspFI CCCAGC 1 cut(s) 686
PspGI CCWGG 1 cut(s) 856
PspN4I GGNNCC 5 cut(s) 185, 211, 345, 615, 736
PspPI GGNCC 1 cut(s) 184
PspXI VCTCGAGB 1 cut(s) 745
PsuI RGATCY 2 cut(s) 361, 734
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 2 cut(s) 81, 549
Sau3AI GATC 4 cut(s) 361, 599, 734, 853
Sau96I GGNCC 1 cut(s) 184
SchI GAGTC 5 cut(s) 56, 161, 421, 736, 772
ScrFI CCNGG 2 cut(s) 611, 858
SduI GDGCHC 1 cut(s) 676
SetI ASST 7 cut(s) 110, 130, 321, 327, 403, 771, 834
SfaNI GCATC 5 cut(s) 440, 474, 499, 699, 922
SfcI CTRYAG 3 cut(s) 384, 396, 912
SfoI GGCGCC 1 cut(s) 345
Sfr274I CTCGAG 1 cut(s) 745
SinI GGWCC 1 cut(s) 184
SlaI CTCGAG 1 cut(s) 745
SmlI CTYRAG 2 cut(s) 469, 745
SmoI CTYRAG 2 cut(s) 469, 745
Sse9I AATT 4 cut(s) 36, 67, 554, 651
SsiI CCGC 7 cut(s) 81, 102, 123, 225, 254, 548, 761
SspDI GGCGCC 1 cut(s) 343
SspMI CTAG 1 cut(s) 966
StyD4I CCNGG 2 cut(s) 609, 856
TaaI ACNGT 2 cut(s) 25, 913
TaqI TCGA 4 cut(s) 65, 370, 602, 746
TasI AATT 4 cut(s) 36, 67, 554, 651
TauI GCSGC 2 cut(s) 83, 551
TfiI GAWTC 2 cut(s) 228, 887
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TseFI GTSAC 1 cut(s) 861
Tsp45I GTSAC 1 cut(s) 861
TspDTI ATGAA 4 cut(s) 132, 150, 238, 468
TspGWI ACGGA 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 184
XapI RAATTY 2 cut(s) 67, 554
XhoI CTCGAG 1 cut(s) 745
XmiI GTMKAC 3 cut(s) 395, 662, 915
XspI CTAG 1 cut(s) 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.