Rh3BG041300

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000368
Physical Location & Seq
Reverse (-)
2659144 .. 2661918
2775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG041300.1

Sequence Viewer

Length: 672 bp
ATGGCTCTCCGTCAACTTTTTATCCAAGGAACATACTTGAGGTTATCGCCTATAAGATTTTTAAAAGCTCTCAGGGTGTTTAGGAGACTCACAATGGCAACCGTACTGTTGTGTTTTTTGTTGATGTGTCATTTGAATCCAGCATTGGCTGCCTCAGGTGGATCGGTCGGCGGAGATTCTTGGTCGGATTCCGATTCCGATTCCGATTCCGATTCCGATTCGCATCTGTATTCCTCGGATTCGGATTCATGGTCGCTCCCATCATCAAGTCCTTCGAAACCGAATTCGCCCGAGGAGCGTAAAGGTCAGGCAGTTTTTTGTTTGTTGATTATGGGGGCAATTGTGGTGTTGGCATTTACATGTTCATCAAGATCTACTGCCACTGTTGTCAAGCTTCAGGTTGGTCTGTTGAGCACAGCGCGAACACTCCTAAAGGATCTTGATCAGATAGCTGAAACTGCAGATACGTCTACTCGCAAGGATTTGAGCCGTGTTTTGACCGGTAAACCTTATAATCAGCTATTCTTTTCTAAGTTGGTGAATGGAGAAAATGGTAGTTTCATAATGCCACAGTTGAACATATTTTTGTTTGAAAGAGTAAATTTTCAACAGTGGAAGTTGTTTAACTTTGAAAGAACTTATTATTCATTACTGGGTAGACAGCTAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

223

Amino Acids

24.8

Weight (kDa)

8.94

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 127 - 167 1.7e-08 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 513
AccI GTMKAC 2 cut(s) 470, 658
AccII CGCG 1 cut(s) 421
AciI CCGC 1 cut(s) 171
AclWI GGATC 2 cut(s) 169, 444
AcsI RAATTY 2 cut(s) 283, 601
AcuI CTGAAG 1 cut(s) 380
AfaI GTAC 1 cut(s) 105
AflIII ACRYGT 1 cut(s) 359
AgeI ACCGGT 1 cut(s) 500
AgsI TTSAA 5 cut(s) 136, 577, 593, 608, 632
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AluBI AGCT 5 cut(s) 68, 394, 452, 520, 664
AluI AGCT 5 cut(s) 68, 394, 452, 520, 664
Alw21I GWGCWC 1 cut(s) 416
Alw26I GTCTC 1 cut(s) 79
AlwI GGATC 2 cut(s) 169, 444
Ama87I CYCGRG 1 cut(s) 290
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 2 cut(s) 283, 601
AsiGI ACCGGT 1 cut(s) 500
AspLEI GCGC 1 cut(s) 421
AsuHPI GGTGA 1 cut(s) 550
AsuII TTCGAA 1 cut(s) 275
AvaI CYCGRG 1 cut(s) 290
AxyI CCTNAGG 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 416
BbvI GCAGC 1 cut(s) 136
BccI CCATC 1 cut(s) 268
BceAI ACGGC 1 cut(s) 474
BclI TGATCA 1 cut(s) 442
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 1 cut(s) 665
BfmI CTRYAG 1 cut(s) 459
BglII AGATCT 1 cut(s) 371
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 290
BmrI ACTGGG 1 cut(s) 662
BmsI GCATC 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 662
Bpu14I TTCGAA 1 cut(s) 275
BpuEI CTTGAG 1 cut(s) 58
BsaBI GATNNNNATC 2 cut(s) 222, 441
BsaJI CCNNGG 3 cut(s) 25, 234, 291
BsaWI WCCGGW 1 cut(s) 500
Bse118I RCCGGY 1 cut(s) 500
Bse1I ACTGG 1 cut(s) 657
Bse21I CCTNAGG 1 cut(s) 154
Bse8I GATNNNNATC 2 cut(s) 222, 441
BseDI CCNNGG 3 cut(s) 25, 234, 291
BseJI GATNNNNATC 2 cut(s) 222, 441
BseMII CTCAG 2 cut(s) 85, 168
BseNI ACTGG 1 cut(s) 657
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 421
Bsh1285I CGRYCG 1 cut(s) 168
BshTI ACCGGT 1 cut(s) 500
BsiEI CGRYCG 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 416
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 1 cut(s) 501
BsmAI GTCTC 1 cut(s) 79
BsoBI CYCGRG 1 cut(s) 290
Bsp119I TTCGAA 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 416
Bsp143I GATC 4 cut(s) 161, 371, 436, 442
BspACI CCGC 1 cut(s) 171
BspCNI CTCAG 2 cut(s) 84, 167
BspFNI CGCG 1 cut(s) 421
BspMAI CTGCAG 1 cut(s) 463
BspPI GGATC 2 cut(s) 169, 444
BspT104I TTCGAA 1 cut(s) 275
BsrFI RCCGGY 1 cut(s) 500
BsrI ACTGG 1 cut(s) 657
BssAI RCCGGY 1 cut(s) 500
BssECI CCNNGG 3 cut(s) 25, 234, 291
BssMI GATC 4 cut(s) 161, 371, 436, 442
BssT1I CCWWGG 1 cut(s) 25
Bst4CI ACNGT 5 cut(s) 103, 108, 385, 573, 612
BstAPI GCANNNNNTGC 1 cut(s) 149
BstBI TTCGAA 1 cut(s) 275
BstDEI CTNAG 3 cut(s) 71, 154, 531
BstFNI CGCG 1 cut(s) 421
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 4 cut(s) 164, 374, 439, 445
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 4 cut(s) 161, 371, 436, 442
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 3 cut(s) 149, 295, 458
BstNSI RCATGY 1 cut(s) 363
BstSFI CTRYAG 1 cut(s) 459
BstUI CGCG 1 cut(s) 421
BstV1I GCAGC 1 cut(s) 136
BstX2I RGATCY 2 cut(s) 371, 436
BstYI RGATCY 2 cut(s) 371, 436
Bsu36I CCTNAGG 1 cut(s) 154
BtsIMutI CAGTG 2 cut(s) 381, 617
CfoI GCGC 1 cut(s) 421
Cfr10I RCCGGY 1 cut(s) 500
Csp6I GTAC 1 cut(s) 104
CspAI ACCGGT 1 cut(s) 500
CviAII CATG 2 cut(s) 249, 360
CviJI RGCY 8 cut(s) 5, 68, 149, 394, 452, 489, 520, 664
CviKI_1 RGCY 8 cut(s) 5, 68, 149, 394, 452, 489, 520, 664
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 3 cut(s) 71, 154, 531
DpnI GATC 4 cut(s) 163, 373, 438, 444
DpnII GATC 4 cut(s) 161, 371, 436, 442
DraI TTTAAA 1 cut(s) 63
EciI GGCGGA 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 380
Eco81I CCTNAGG 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 290
EcoRI GAATTC 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 2 cut(s) 252, 363
FaiI YATR 8 cut(s) 34, 53, 250, 332, 361, 513, 563, 581
FatI CATG 2 cut(s) 248, 359
FbaI TGATCA 1 cut(s) 442
FblI GTMKAC 2 cut(s) 470, 658
Fnu4HI GCNGC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 1 cut(s) 665
GlaI GCGC 1 cut(s) 420
GluI GCNGC 1 cut(s) 150
HapII CCGG 1 cut(s) 501
HhaI GCGC 1 cut(s) 421
Hin1II CATG 2 cut(s) 252, 363
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HincII GTYRAC 1 cut(s) 14
HindII GTYRAC 1 cut(s) 14
HindIII AAGCTT 1 cut(s) 392
HpaII CCGG 1 cut(s) 501
HphI GGTGA 1 cut(s) 550
Hpy166II GTNNAC 4 cut(s) 14, 471, 506, 659
Hpy188I TCNGA 9 cut(s) 187, 193, 199, 205, 211, 217, 238, 244, 447
Hpy188III TCNNGA 2 cut(s) 369, 440
Hpy8I GTNNAC 4 cut(s) 14, 471, 506, 659
HpyAV CCTTC 1 cut(s) 282
HpyCH4III ACNGT 5 cut(s) 103, 108, 385, 573, 612
HpyCH4IV ACGT 1 cut(s) 467
HpyCH4V TGCA 1 cut(s) 461
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 295, 458
HpyF3I CTNAG 3 cut(s) 71, 154, 531
HpySE526I ACGT 1 cut(s) 467
Hsp92II CATG 2 cut(s) 252, 363
HspAI GCGC 1 cut(s) 419
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 4 cut(s) 161, 371, 436, 442
LmnI GCTCC 2 cut(s) 261, 295
LpnPI CCDG 7 cut(s) 58, 141, 153, 293, 383, 514, 638
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 232
MaeI CTAG 1 cut(s) 665
MaeII ACGT 1 cut(s) 467
MalI GATC 4 cut(s) 163, 373, 438, 444
MboI GATC 4 cut(s) 161, 371, 436, 442
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 2 cut(s) 371, 436
MhlI GDGCHC 1 cut(s) 416
MluCI AATT 3 cut(s) 283, 339, 601
MlyI GAGTC 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 4 cut(s) 33, 163, 244, 286
MseI TTAA 2 cut(s) 62, 624
MslI CAYNNNNRTG 1 cut(s) 358
MspI CCGG 1 cut(s) 501
MunI CAATTG 1 cut(s) 339
MvnI CGCG 1 cut(s) 421
MwoI GCNNNNNNNGC 3 cut(s) 149, 295, 458
NdeII GATC 4 cut(s) 161, 371, 436, 442
NlaIII CATG 2 cut(s) 252, 363
NspI RCATGY 1 cut(s) 363
NspV TTCGAA 1 cut(s) 275
PciI ACATGT 1 cut(s) 359
PinAI ACCGGT 1 cut(s) 500
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
PscI ACATGT 1 cut(s) 359
PsiI TTATAA 1 cut(s) 513
PstI CTGCAG 1 cut(s) 463
PsuI RGATCY 2 cut(s) 371, 436
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 358
SaqAI TTAA 2 cut(s) 62, 624
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 4 cut(s) 161, 371, 436, 442
SchI GAGTC 1 cut(s) 81
SduI GDGCHC 1 cut(s) 416
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 1 cut(s) 459
SfuI TTCGAA 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 358
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 3 cut(s) 283, 339, 601
SsiI CCGC 1 cut(s) 171
SspMI CTAG 1 cut(s) 665
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 5 cut(s) 103, 108, 385, 573, 612
TaiI ACGT 1 cut(s) 470
TaqI TCGA 1 cut(s) 275
TaqII GACCGA 1 cut(s) 154
TasI AATT 3 cut(s) 283, 339, 601
Tru1I TTAA 2 cut(s) 62, 624
Tru9I TTAA 2 cut(s) 62, 624
TscAI CASTG 2 cut(s) 388, 617
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 4 cut(s) 237, 354, 550, 636
TspRI CASTG 2 cut(s) 388, 617
XapI RAATTY 2 cut(s) 283, 601
XceI RCATGY 1 cut(s) 363
XmiI GTMKAC 2 cut(s) 470, 658
XspI CTAG 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.