Rh3CG039600

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000368
Physical Location & Seq
Reverse (-)
2654607 .. 2657270
2664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG039600.1

Sequence Viewer

Length: 549 bp
ATGGGTTCCTCAATTCCGGTTGGTTTGTTGGGTACAGCTCGAGCACTCCAAAAAGATCTTGATCGTATCGCCGAAACTGCTAATACTTCTAACCGCAAGGGCTTGAGCTATGTCTTGACAGAGGCAACTGTAGCTTTGCTTAGACATCCTGATTATTGGATCTCAAGTTATTCATCTGTTACTCCAAATCATAACATGATGGATGCGGAGAAATGCTTCAATAAAATTTCTATTGAAGAGAGGGCTAAATTTGATGAAGAGACGCTTGTCAACGTGAACAACCAAAAAAGAAAAAGCTCGACAAGCAAGGCTGATGATGGATTCCAAAACGAATATATAGTGGTGACATTGTTAGTTGCGATTGAAGGGAGGCATAAGTTGCCCACCATCAATGGCAGCGCTGACTTGAAGGAAGCATTGAAAAGTCTCGGATCCATTCCTTCAAAGAATATACTGGCAGCAGAAGTGTTATGGACTCCACAGAAAGAAAATGACACACTGTCCGAGGAGGAACTAATAGAAGATTACCCACTTCTGAAGTGTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

182

Amino Acids

20.2

Weight (kDa)

5.3

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 4 - 180 3.1e-68 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 94, 206
AclWI GGATC 3 cut(s) 167, 426, 439
AcsI RAATTY 2 cut(s) 225, 248
AfaI GTAC 1 cut(s) 34
AfeI AGCGCT 1 cut(s) 400
AgsI TTSAA 6 cut(s) 220, 236, 365, 409, 421, 444
AhdI GACNNNNNGTC 1 cut(s) 499
AluBI AGCT 4 cut(s) 38, 108, 134, 297
AluI AGCT 4 cut(s) 38, 108, 134, 297
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 2 cut(s) 254, 431
AlwI GGATC 3 cut(s) 167, 426, 439
Ama87I CYCGRG 1 cut(s) 39
Aor51HI AGCGCT 1 cut(s) 400
ApeKI GCWGC 2 cut(s) 396, 458
ApoI RAATTY 2 cut(s) 225, 248
Asp700I GAANNNNTTC 1 cut(s) 215
AspLEI GCGC 1 cut(s) 401
AsuHPI GGTGA 1 cut(s) 355
AvaI CYCGRG 1 cut(s) 39
BamHI GGATCC 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 2 cut(s) 408, 470
BccI CCATC 3 cut(s) 193, 311, 395
BcoDI GTCTC 2 cut(s) 254, 431
BfmI CTRYAG 1 cut(s) 129
BfoI RGCGCY 1 cut(s) 402
BglII AGATCT 1 cut(s) 55
BisI GCNGC 2 cut(s) 397, 459
BlsI GCNGC 2 cut(s) 398, 460
BmeRI GACNNNNNGTC 1 cut(s) 499
BmeT110I CYCGRG 1 cut(s) 39
BmiI GGNNCC 2 cut(s) 7, 433
BmsI GCATC 1 cut(s) 193
BoxI GACNNNNGTC 1 cut(s) 266
BpuEI CTTGAG 2 cut(s) 124, 148
BsaBI GATNNNNATC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 504
BsaWI WCCGGW 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 459
Bse8I GATNNNNATC 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 2 cut(s) 145, 208
BseJI GATNNNNATC 1 cut(s) 60
BseNI ACTGG 1 cut(s) 459
BseRI GAGGAG 1 cut(s) 521
BseXI GCAGC 2 cut(s) 408, 470
BsiHKAI GWGCWC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 39
BsiSI CCGG 1 cut(s) 17
BsmAI GTCTC 2 cut(s) 254, 431
BsmBI CGTCTC 1 cut(s) 254
BsoBI CYCGRG 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 4 cut(s) 55, 61, 159, 431
BspACI CCGC 2 cut(s) 94, 206
BspLI GGNNCC 2 cut(s) 7, 433
BspPI GGATC 3 cut(s) 167, 426, 439
BsrI ACTGG 1 cut(s) 459
BssECI CCNNGG 1 cut(s) 504
BssMI GATC 4 cut(s) 55, 61, 159, 431
Bst4CI ACNGT 2 cut(s) 130, 501
Bst6I CTCTTC 2 cut(s) 231, 252
BstAPI GCANNNNNTGC 1 cut(s) 379
BstDEI CTNAG 1 cut(s) 140
BstF5I GGATG 2 cut(s) 145, 208
BstH2I RGCGCY 1 cut(s) 402
BstHHI GCGC 1 cut(s) 401
BstKTI GATC 4 cut(s) 58, 64, 162, 434
BstMAI GTCTC 2 cut(s) 254, 431
BstMBI GATC 4 cut(s) 55, 61, 159, 431
BstMWI GCNNNNNNNGC 4 cut(s) 77, 131, 303, 379
BstPAI GACNNNNGTC 1 cut(s) 266
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 408, 470
BstX2I RGATCY 3 cut(s) 55, 159, 431
BstYI RGATCY 3 cut(s) 55, 159, 431
BtsCI GGATG 2 cut(s) 145, 208
BtsIMutI CAGTG 1 cut(s) 497
CfoI GCGC 1 cut(s) 401
CseI GACGC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 33
CviAII CATG 1 cut(s) 196
CviJI RGCY 7 cut(s) 38, 102, 108, 134, 245, 297, 311
CviKI_1 RGCY 7 cut(s) 38, 102, 108, 134, 245, 297, 311
CviQI GTAC 1 cut(s) 33
DdeI CTNAG 1 cut(s) 140
DpnI GATC 4 cut(s) 57, 63, 161, 433
DpnII GATC 4 cut(s) 55, 61, 159, 431
DriI GACNNNNNGTC 1 cut(s) 499
Eam1104I CTCTTC 2 cut(s) 231, 252
Eam1105I GACNNNNNGTC 1 cut(s) 499
EarI CTCTTC 2 cut(s) 231, 252
Eco47III AGCGCT 1 cut(s) 400
Eco88I CYCGRG 1 cut(s) 39
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 1 cut(s) 199
FaiI YATR 9 cut(s) 111, 192, 197, 336, 338, 375, 452, 472, 547
FalI AAGNNNNNCTT 2 cut(s) 249, 281
FatI CATG 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 397, 459
FokI GGATG 2 cut(s) 132, 215
Fsp4HI GCNGC 2 cut(s) 397, 459
GlaI GCGC 1 cut(s) 400
GluI GCNGC 2 cut(s) 397, 459
HaeII RGCGCY 1 cut(s) 402
HapII CCGG 1 cut(s) 17
HgaI GACGC 1 cut(s) 271
HhaI GCGC 1 cut(s) 401
Hin1II CATG 1 cut(s) 199
Hin6I GCGC 1 cut(s) 399
HinP1I GCGC 1 cut(s) 399
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 2 cut(s) 321, 475
HpaII CCGG 1 cut(s) 17
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 2 cut(s) 271, 277
Hpy188I TCNGA 3 cut(s) 431, 505, 537
Hpy188III TCNNGA 3 cut(s) 59, 115, 149
Hpy8I GTNNAC 2 cut(s) 271, 277
HpyAV CCTTC 3 cut(s) 359, 403, 450
HpyCH4III ACNGT 2 cut(s) 130, 501
HpyCH4IV ACGT 1 cut(s) 273
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 131, 303, 379
HpyF3I CTNAG 1 cut(s) 140
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 1 cut(s) 199
HspAI GCGC 1 cut(s) 399
Kzo9I GATC 4 cut(s) 55, 61, 159, 431
LpnPI CCDG 3 cut(s) 30, 162, 440
Lsp1109I GCAGC 2 cut(s) 408, 470
LweI GCATC 1 cut(s) 193
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 2 cut(s) 178, 343
MalI GATC 4 cut(s) 57, 63, 161, 433
MboI GATC 4 cut(s) 55, 61, 159, 431
MboII GAAGA 3 cut(s) 248, 269, 533
MflI RGATCY 3 cut(s) 55, 159, 431
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 3 cut(s) 12, 225, 248
MlyI GAGTC 1 cut(s) 469
MnlI CCTC 6 cut(s) 19, 115, 234, 363, 499, 502
MroXI GAANNNNTTC 1 cut(s) 215
MspI CCGG 1 cut(s) 17
MwoI GCNNNNNNNGC 4 cut(s) 77, 131, 303, 379
NdeII GATC 4 cut(s) 55, 61, 159, 431
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 2 cut(s) 7, 433
NmuCI GTSAC 1 cut(s) 343
PaeR7I CTCGAG 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 1 cut(s) 321
PkrI GCNGC 2 cut(s) 398, 460
PleI GAGTC 1 cut(s) 469
PpsI GAGTC 1 cut(s) 469
PshAI GACNNNNGTC 1 cut(s) 266
PspN4I GGNNCC 2 cut(s) 7, 433
PspXI VCTCGAGB 1 cut(s) 39
PsuI RGATCY 3 cut(s) 55, 159, 431
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
SatI GCNGC 2 cut(s) 397, 459
Sau3AI GATC 4 cut(s) 55, 61, 159, 431
SchI GAGTC 1 cut(s) 469
SduI GDGCHC 1 cut(s) 46
SetI ASST 5 cut(s) 40, 110, 136, 276, 299
SfaNI GCATC 1 cut(s) 193
SfcI CTRYAG 1 cut(s) 129
Sfr274I CTCGAG 1 cut(s) 39
SlaI CTCGAG 1 cut(s) 39
SmlI CTYRAG 3 cut(s) 39, 103, 163
SmoI CTYRAG 3 cut(s) 39, 103, 163
Sse9I AATT 3 cut(s) 12, 225, 248
SsiI CCGC 2 cut(s) 94, 206
TaaI ACNGT 2 cut(s) 130, 501
TaiI ACGT 1 cut(s) 276
TaqI TCGA 2 cut(s) 40, 299
TasI AATT 3 cut(s) 12, 225, 248
TfiI GAWTC 1 cut(s) 321
TscAI CASTG 1 cut(s) 504
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 2 cut(s) 396, 458
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 2 cut(s) 162, 270
TspRI CASTG 1 cut(s) 504
XapI RAATTY 2 cut(s) 225, 248
XhoI CTCGAG 1 cut(s) 39
XmnI GAANNNNTTC 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.