Rmu_sc0001448.1_g000001

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001448.1
OG0000368
Physical Location & Seq
Reverse (-)
8750 .. 11745
2996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001448.1_g000001.1.cds

Sequence Viewer

Length: 1269 bp
atgccattgagaaatccggccaccgtcgccgccgtgttgttcttgttcctcttgttgattccgagcttcgcgtcagccgccaccggcggccacgtcggcggaagcttgttcaaaaaatccaaatcttcgtcttcgtcgcggtcttcttcttcttcttcttcttggtcttcgcactcgtcgcgtcactactacgcgccgccgacttatcactccacgccgtctccttcctcatcgtcggaagacggcggcggtacggcgttaatcggtttcgtgattgtgttgggggctatcgtttgtgtgttagcattctgcgactattgtacggcggcggagaagagaaacggtaactgtgccggggttgggaaactaagcgtggtgaagcttcaggttggtttgatgggcaaggcgcggtcactccaaagggatcttaatcgaattactgaaactgcaaatacttctactccaaagggtttgagctatgttttgacaggggcaacgacagctttgcttcggaatcttgatcattgcatctcaagctattcatctgttatacgaaagtccgagatagaggatgcagaggaatgcttcaaactattttctttggaagaggcggctaaatttgacgaagtgactcttgccaatgtgaacaacttcaaaaagcgctcaagaagccagtcacctaatgaaatctacaaagaatatatagtggttacaattctggtggctactgatggagaacagaagttgcctaccatcagtggcactcgtgacttgaagaaagcattacataaacttggagccatttcctcgagcaaaataatggctgtagaggtcttgtggactcctcaactagaaaacgatactttgactgagagggaactactcaaaggttacccagatttgaggggcttttatgaagaagcacatcaagggccatatgaagatcagcagccgaaatacaaacatgctaaagttctcaaatggttctgtgtatgcaccctccgccaatgtttgtactctccatattttatttcttctgccagttgtgggacttctgctctcacttccataaagccaaatctcaatgatttgttcctcagtctagaagatggtgatgttgctgatctccttcccactcatattgtggcaaatgttatcgttgtcacagctagatcactcaacgtgaccgctgttcgtattcttaccggaaatggagataatttcaatactcttgccggaaatgaacaacaaaatggagttcgtaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

422

Amino Acids

45.71

Weight (kDa)

8.56

Isoelectric Point (pI)

50.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 71, 139, 181, 194, 409
AclWI GGATC 1 cut(s) 432
AcoI YGGCCR 2 cut(s) 18, 88
AcsI RAATTY 1 cut(s) 617
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 3 cut(s) 253, 322, 1016
AfeI AGCGCT 1 cut(s) 662
AfiI CCNNNNNNNGG 2 cut(s) 360, 1047
AgsI TTSAA 5 cut(s) 112, 589, 655, 775, 1225
AjiI CACGTC 1 cut(s) 94
AluBI AGCT 7 cut(s) 66, 105, 382, 477, 503, 537, 1169
AluI AGCT 7 cut(s) 66, 105, 382, 477, 503, 537, 1169
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 1 cut(s) 432
Ama87I CYCGRG 1 cut(s) 808
Aor51HI AGCGCT 1 cut(s) 662
AoxI GGCC 3 cut(s) 18, 88, 932
ApeKI GCWGC 1 cut(s) 949
ApoI RAATTY 1 cut(s) 617
Asp700I GAANNNNTTC 1 cut(s) 650
AspLEI GCGC 3 cut(s) 196, 409, 663
AspS9I GGNCC 1 cut(s) 932
AsuC2I CCSGG 1 cut(s) 355
AsuHPI GGTGA 3 cut(s) 388, 669, 1124
AvaI CYCGRG 1 cut(s) 808
BauI CACGAG 1 cut(s) 765
BbsI GAAGAC 4 cut(s) 123, 135, 159, 246
BbvI GCAGC 1 cut(s) 961
BccI CCATC 4 cut(s) 391, 725, 761, 1103
BceAI ACGGC 5 cut(s) 17, 202, 259, 270, 339
BcgI CGANNNNNNTGC 2 cut(s) 487, 521
BclI TGATCA 1 cut(s) 520
BcnI CCSGG 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 3 cut(s) 851, 1103, 1170
BfmI CTRYAG 1 cut(s) 825
BfoI RGCGCY 1 cut(s) 664
BglI GCCNNNNNGGC 1 cut(s) 96
BisI GCNGC 8 cut(s) 30, 78, 88, 197, 247, 327, 612, 950
BlsI GCNGC 8 cut(s) 31, 79, 89, 198, 248, 328, 613, 951
Bme1390I CCNGG 1 cut(s) 355
BmeT110I CYCGRG 1 cut(s) 808
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 932
BmiI GGNNCC 1 cut(s) 799
BmrFI CCNGG 1 cut(s) 355
BmsI GCATC 2 cut(s) 537, 562
BpiI GAAGAC 4 cut(s) 123, 135, 159, 246
BpuEI CTTGAG 2 cut(s) 517, 649
BpuMI CCSGG 1 cut(s) 355
BsaBI GATNNNNATC 1 cut(s) 429
BsaJI CCNNGG 1 cut(s) 354
BsaWI WCCGGW 1 cut(s) 1205
BsaXI ACNNNNNCTCC 4 cut(s) 205, 235, 445, 475
Bsc4I CCNNNNNNNGG 2 cut(s) 360, 1047
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 673, 1041
Bse3DI GCAATG 1 cut(s) 523
Bse8I GATNNNNATC 1 cut(s) 429
BseDI CCNNGG 1 cut(s) 354
BseGI GGATG 1 cut(s) 577
BseJI GATNNNNATC 1 cut(s) 429
BseLI CCNNNNNNNGG 2 cut(s) 360, 1047
BseMI GCAATG 1 cut(s) 523
BseMII CTCAG 2 cut(s) 861, 1111
BseNI ACTGG 2 cut(s) 673, 1041
BseRI GAGGAG 1 cut(s) 834
BseXI GCAGC 1 cut(s) 961
Bsh1236I CGCG 5 cut(s) 71, 139, 181, 194, 409
BshFI GGCC 3 cut(s) 20, 90, 934
BsiHKCI CYCGRG 1 cut(s) 808
BsiSI CCGG 5 cut(s) 17, 84, 354, 1206, 1236
BslFI GGGAC 1 cut(s) 1063
BslI CCNNNNNNNGG 2 cut(s) 360, 1047
BsmAI GTCTC 1 cut(s) 225
BsmBI CGTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 1063
BsmI GAATGC 2 cut(s) 305, 587
BsnI GGCC 3 cut(s) 20, 90, 934
BsoBI CYCGRG 1 cut(s) 808
Bsp143I GATC 5 cut(s) 424, 520, 943, 1123, 1172
BspANI GGCC 3 cut(s) 20, 90, 934
BspCNI CTCAG 2 cut(s) 862, 1110
BspFNI CGCG 5 cut(s) 71, 139, 181, 194, 409
BspLI GGNNCC 1 cut(s) 799
BspPI GGATC 1 cut(s) 432
BsrDI GCAATG 1 cut(s) 523
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 2 cut(s) 673, 1041
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 5 cut(s) 424, 520, 943, 1123, 1172
BssSI CACGAG 1 cut(s) 765
Bst2BI CACGAG 1 cut(s) 765
Bst4CI ACNGT 3 cut(s) 25, 344, 350
Bst6I CTCTTC 2 cut(s) 329, 600
BstDEI CTNAG 3 cut(s) 368, 870, 1097
BstEII GGTNACC 1 cut(s) 890
BstF5I GGATG 1 cut(s) 577
BstFNI CGCG 5 cut(s) 71, 139, 181, 194, 409
BstH2I RGCGCY 1 cut(s) 664
BstHHI GCGC 3 cut(s) 196, 409, 663
BstKTI GATC 5 cut(s) 427, 523, 946, 1126, 1175
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 5 cut(s) 424, 520, 943, 1123, 1172
BstMWI GCNNNNNNNGC 8 cut(s) 26, 77, 96, 178, 500, 534, 669, 1002
BstNSI RCATGY 1 cut(s) 968
BstPI GGTNACC 1 cut(s) 890
BstSCI CCNGG 1 cut(s) 353
BstSFI CTRYAG 1 cut(s) 825
BstUI CGCG 5 cut(s) 71, 139, 181, 194, 409
BstV1I GCAGC 1 cut(s) 961
BstV2I GAAGAC 4 cut(s) 123, 135, 159, 246
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
BsuRI GGCC 3 cut(s) 20, 90, 934
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 1 cut(s) 577
BtsIMutI CAGTG 1 cut(s) 763
CfoI GCGC 3 cut(s) 196, 409, 663
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 932
CseI GACGC 2 cut(s) 60, 170
Csp6I GTAC 3 cut(s) 252, 321, 1015
CspCI CAANNNNNGTGG 4 cut(s) 702, 737, 1123, 1158
CviAII CATG 1 cut(s) 965
CviQI GTAC 3 cut(s) 252, 321, 1015
DdeI CTNAG 3 cut(s) 368, 870, 1097
DpnI GATC 5 cut(s) 426, 522, 945, 1125, 1174
DpnII GATC 5 cut(s) 424, 520, 943, 1123, 1172
EaeI YGGCCR 2 cut(s) 18, 88
Eam1104I CTCTTC 2 cut(s) 329, 600
EarI CTCTTC 2 cut(s) 329, 600
EciI GGCGGA 3 cut(s) 114, 344, 992
Eco47III AGCGCT 1 cut(s) 662
Eco57I CTGAAG 1 cut(s) 368
Eco88I CYCGRG 1 cut(s) 808
Eco91I GGTNACC 1 cut(s) 890
EcoO65I GGTNACC 1 cut(s) 890
Esp3I CGTCTC 1 cut(s) 225
FaeI CATG 1 cut(s) 968
FalI AAGNNNNNCTT 2 cut(s) 618, 650
FaqI GGGAC 1 cut(s) 1063
FatI CATG 1 cut(s) 964
FauNDI CATATG 1 cut(s) 937
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 8 cut(s) 30, 78, 88, 197, 247, 327, 612, 950
FokI GGATG 1 cut(s) 584
Fsp4HI GCNGC 8 cut(s) 30, 78, 88, 197, 247, 327, 612, 950
FspBI CTAG 3 cut(s) 851, 1103, 1170
GlaI GCGC 3 cut(s) 195, 408, 662
GluI GCNGC 8 cut(s) 30, 78, 88, 197, 247, 327, 612, 950
HaeII RGCGCY 1 cut(s) 664
HaeIII GGCC 3 cut(s) 20, 90, 934
HapII CCGG 5 cut(s) 17, 84, 354, 1206, 1236
HgaI GACGC 2 cut(s) 60, 170
HhaI GCGC 3 cut(s) 196, 409, 663
Hin1II CATG 1 cut(s) 968
Hin6I GCGC 3 cut(s) 194, 407, 661
HinP1I GCGC 3 cut(s) 194, 407, 661
HindIII AAGCTT 2 cut(s) 103, 380
HinfI GANTC 4 cut(s) 58, 514, 631, 841
HpaII CCGG 5 cut(s) 17, 84, 354, 1206, 1236
HphI GGTGA 3 cut(s) 388, 669, 1124
Hpy166II GTNNAC 2 cut(s) 646, 840
Hpy188I TCNGA 4 cut(s) 63, 238, 513, 562
Hpy188III TCNNGA 5 cut(s) 271, 518, 666, 767, 1103
Hpy8I GTNNAC 2 cut(s) 646, 840
Hpy99I CGWCG 5 cut(s) 29, 98, 139, 181, 238
HpyAV CCTTC 2 cut(s) 234, 1139
HpyCH4III ACNGT 3 cut(s) 25, 344, 350
HpyCH4IV ACGT 2 cut(s) 93, 1182
HpyCH4V TGCA 4 cut(s) 449, 528, 575, 996
HpyF10VI GCNNNNNNNGC 8 cut(s) 26, 77, 96, 178, 500, 534, 669, 1002
HpyF3I CTNAG 3 cut(s) 368, 870, 1097
HpySE526I ACGT 2 cut(s) 93, 1182
Hsp92II CATG 1 cut(s) 968
HspAI GCGC 3 cut(s) 194, 407, 661
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 5 cut(s) 424, 520, 943, 1123, 1172
LmnI GCTCC 1 cut(s) 797
Lsp1109I GCAGC 1 cut(s) 961
LweI GCATC 2 cut(s) 537, 562
MaeI CTAG 3 cut(s) 851, 1103, 1170
MaeII ACGT 2 cut(s) 93, 1182
MalI GATC 5 cut(s) 426, 522, 945, 1125, 1174
MboI GATC 5 cut(s) 424, 520, 943, 1123, 1172
MflI RGATCY 1 cut(s) 424
MluCI AATT 4 cut(s) 435, 617, 714, 1219
MlyI GAGTC 2 cut(s) 625, 835
MmeI TCCRAC 1 cut(s) 216
MroXI GAANNNNTTC 1 cut(s) 650
MseI TTAA 2 cut(s) 260, 429
MspA1I CMGCKG 1 cut(s) 1190
MspI CCGG 5 cut(s) 17, 84, 354, 1206, 1236
MspR9I CCNGG 1 cut(s) 355
Mva1269I GAATGC 2 cut(s) 305, 587
MvnI CGCG 5 cut(s) 71, 139, 181, 194, 409
MwoI GCNNNNNNNGC 8 cut(s) 26, 77, 96, 178, 500, 534, 669, 1002
NciI CCSGG 1 cut(s) 355
NdeI CATATG 1 cut(s) 937
NdeII GATC 5 cut(s) 424, 520, 943, 1123, 1172
NlaIII CATG 1 cut(s) 968
NlaIV GGNNCC 1 cut(s) 799
NmuCI GTSAC 7 cut(s) 182, 411, 628, 675, 767, 1162, 1183
NspI RCATGY 1 cut(s) 968
PaeR7I CTCGAG 1 cut(s) 808
PctI GAATGC 2 cut(s) 305, 587
PdmI GAANNNNTTC 1 cut(s) 650
PfeI GAWTC 2 cut(s) 58, 514
PkrI GCNGC 8 cut(s) 31, 79, 89, 198, 248, 328, 613, 951
PleI GAGTC 2 cut(s) 625, 835
PpsI GAGTC 2 cut(s) 625, 835
PspEI GGTNACC 1 cut(s) 890
PspN4I GGNNCC 1 cut(s) 799
PspPI GGNCC 1 cut(s) 932
PspXI VCTCGAGB 1 cut(s) 808
PsuI RGATCY 1 cut(s) 424
RsaI GTAC 3 cut(s) 253, 322, 1016
RsaNI GTAC 3 cut(s) 252, 321, 1015
SaqAI TTAA 2 cut(s) 260, 429
SatI GCNGC 8 cut(s) 30, 78, 88, 197, 247, 327, 612, 950
Sau3AI GATC 5 cut(s) 424, 520, 943, 1123, 1172
Sau96I GGNCC 1 cut(s) 932
SchI GAGTC 2 cut(s) 625, 835
ScrFI CCNGG 1 cut(s) 355
SfaNI GCATC 2 cut(s) 537, 562
SfcI CTRYAG 1 cut(s) 825
Sfr274I CTCGAG 1 cut(s) 808
SgrAI CRCCGGYG 1 cut(s) 83
SlaI CTCGAG 1 cut(s) 808
SmlI CTYRAG 3 cut(s) 532, 664, 808
SmoI CTYRAG 3 cut(s) 532, 664, 808
Sse9I AATT 4 cut(s) 435, 617, 714, 1219
SspMI CTAG 3 cut(s) 851, 1103, 1170
StyD4I CCNGG 1 cut(s) 353
TaaI ACNGT 3 cut(s) 25, 344, 350
TaiI ACGT 2 cut(s) 96, 1185
TaqI TCGA 2 cut(s) 433, 809
TasI AATT 4 cut(s) 435, 617, 714, 1219
TatI WGTACW 1 cut(s) 1014
TauI GCSGC 7 cut(s) 32, 80, 90, 199, 249, 329, 614
TfiI GAWTC 2 cut(s) 58, 514
Tru1I TTAA 2 cut(s) 260, 429
Tru9I TTAA 2 cut(s) 260, 429
TscAI CASTG 1 cut(s) 763
TseFI GTSAC 7 cut(s) 182, 411, 628, 675, 767, 1162, 1183
TseI GCWGC 1 cut(s) 949
Tsp45I GTSAC 7 cut(s) 182, 411, 628, 675, 767, 1162, 1183
TspDTI ATGAA 5 cut(s) 531, 699, 930, 954, 1257
TspRI CASTG 1 cut(s) 763
XapI RAATTY 1 cut(s) 617
XbaI TCTAGA 1 cut(s) 1102
XceI RCATGY 1 cut(s) 968
XcmI CCANNNNNNNNNTGG 1 cut(s) 1141
XhoI CTCGAG 1 cut(s) 808
XmnI GAANNNNTTC 1 cut(s) 650
XspI CTAG 3 cut(s) 851, 1103, 1170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.