Rmu_sc0001448.1_g000005

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001448.1
OG0000368
Physical Location & Seq
Reverse (-)
33286 .. 35812
2527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001448.1_g000005.1.cds

Sequence Viewer

Length: 945 bp
atggcgttgagaaatccggccaccgtcgccgctttattgcttgctcttctattcatttccgaccccaatttcgcctccgccgctacgggtgggcggtccggcggaagcctgttcccctccggcggagattcttcttcatcttcatcttcgtcttcgtcttcgtcttcgtcttcatcttcatcgtggtcggggtcttcgggttcatcggactcctggtcgtggcaccactcgccgtcgtcgtcgtcgtcttcctcgtcggacggtggactctacgtcttcttggttttaatggcggttgtggttggtgtagcggtcatctgccgctgtgctggtgttgggatctttgccttagcggtcaagcttcaggcgcgatcacttcaaaaggatcttaatcgacttactgaaactacagatatgtctacgtcaacgggtttgagccatcttttgacaggggcatcaacatctttgcttcgcaatcttgattattgcatctcaagttattcatctgttactcgaaagtccgagacagaagatgcagagcaatgcttcaaacaactctctatggaagaagcagctaaatttgatgaagtgacactcaccaatgtgaacaactttatagtgcgttcaacaagccagtcaccaaatgaaggccacaaagaatatatagtggttacaattttggtggctactcgaggaggaccaaagttccccagcatcaatggccctggtgacttgaagagagtattacagagtcttggatccattccctcgaaccaaatactggcggttgaggtcttgtggactcctcaacaagaaaatgatactttgactgagaaggaactacttaaagattacccgcagttgaggggcttttatgatggacttgaagaagggccatatgatgattcccacccgttcttaggggttactgtagtcaagagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

314

Amino Acids

33.2

Weight (kDa)

5.15

Isoelectric Point (pI)

61.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 222
AccB7I CCANNNNNTGG 1 cut(s) 781
AccI GTMKAC 1 cut(s) 419
AccII CGCG 1 cut(s) 370
AclWI GGATC 4 cut(s) 347, 393, 753, 766
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 1 cut(s) 578
AcuI CTGAAG 1 cut(s) 347
AfiI CCNNNNNNNGG 5 cut(s) 122, 219, 647, 781, 920
AgsI TTSAA 5 cut(s) 380, 550, 627, 736, 887
AhdI GACNNNNNGTC 2 cut(s) 214, 272
AjnI CCWGG 2 cut(s) 212, 724
AleI CACNNNNGTG 1 cut(s) 602
AluBI AGCT 3 cut(s) 361, 575, 942
AluI AGCT 3 cut(s) 361, 575, 942
Alw26I GTCTC 1 cut(s) 518
AlwI GGATC 4 cut(s) 347, 393, 753, 766
Ama87I CYCGRG 1 cut(s) 690
AoxI GGCC 4 cut(s) 18, 649, 721, 893
ApeKI GCWGC 1 cut(s) 572
ApoI RAATTY 1 cut(s) 578
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 4 cut(s) 96, 698, 722, 893
AsuHPI GGTGA 3 cut(s) 589, 630, 740
AvaI CYCGRG 1 cut(s) 690
AvaII GGWCC 2 cut(s) 96, 698
BamHI GGATCC 1 cut(s) 758
BanI GGYRCC 1 cut(s) 222
BbsI GAAGAC 7 cut(s) 144, 150, 156, 162, 186, 240, 268
BbvI GCAGC 1 cut(s) 584
BccI CCATC 2 cut(s) 447, 872
BceAI ACGGC 1 cut(s) 217
BciT130I CCWGG 2 cut(s) 214, 726
BcoDI GTCTC 1 cut(s) 518
BfaI CTAG 1 cut(s) 943
BfmI CTRYAG 2 cut(s) 408, 930
BisI GCNGC 4 cut(s) 30, 81, 322, 573
BlsI GCNGC 4 cut(s) 31, 82, 323, 574
Bme1390I CCNGG 2 cut(s) 214, 726
Bme18I GGWCC 2 cut(s) 96, 698
BmeRI GACNNNNNGTC 2 cut(s) 214, 272
BmeT110I CYCGRG 1 cut(s) 690
BmgT120I GGNCC 4 cut(s) 96, 698, 722, 893
BmiI GGNNCC 2 cut(s) 224, 760
BmrFI CCNGG 2 cut(s) 214, 726
BmsI GCATC 4 cut(s) 464, 498, 523, 723
BpiI GAAGAC 7 cut(s) 144, 150, 156, 162, 186, 240, 268
Bpu10I CCTNAGC 1 cut(s) 349
BpuEI CTTGAG 1 cut(s) 478
BsaBI GATNNNNATC 1 cut(s) 390
BsaJI CCNNGG 1 cut(s) 724
Bsc4I CCNNNNNNNGG 5 cut(s) 122, 219, 647, 781, 920
Bse1I ACTGG 2 cut(s) 634, 786
Bse3DI GCAATG 1 cut(s) 548
Bse8I GATNNNNATC 1 cut(s) 390
BseBI CCWGG 2 cut(s) 214, 726
BseDI CCNNGG 1 cut(s) 724
BseJI GATNNNNATC 1 cut(s) 390
BseLI CCNNNNNNNGG 5 cut(s) 122, 219, 647, 781, 920
BseMI GCAATG 1 cut(s) 548
BseMII CTCAG 1 cut(s) 822
BseNI ACTGG 2 cut(s) 634, 786
BseRI GAGGAG 2 cut(s) 708, 795
BseXI GCAGC 1 cut(s) 584
BseYI CCCAGC 1 cut(s) 710
Bsh1236I CGCG 1 cut(s) 370
BshFI GGCC 4 cut(s) 20, 651, 723, 895
BshNI GGYRCC 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 690
BsiSI CCGG 3 cut(s) 17, 99, 120
BslI CCNNNNNNNGG 5 cut(s) 122, 219, 647, 781, 920
BsmAI GTCTC 1 cut(s) 518
BsnI GGCC 4 cut(s) 20, 651, 723, 895
BsoBI CYCGRG 1 cut(s) 690
Bsp143I GATC 4 cut(s) 339, 371, 385, 758
BspANI GGCC 4 cut(s) 20, 651, 723, 895
BspCNI CTCAG 1 cut(s) 823
BspFNI CGCG 1 cut(s) 370
BspLI GGNNCC 2 cut(s) 224, 760
BspPI GGATC 4 cut(s) 347, 393, 753, 766
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 222
BsrDI GCAATG 1 cut(s) 548
BsrI ACTGG 2 cut(s) 634, 786
BssECI CCNNGG 1 cut(s) 724
BssMI GATC 4 cut(s) 339, 371, 385, 758
Bst2UI CCWGG 2 cut(s) 214, 726
Bst4CI ACNGT 3 cut(s) 25, 263, 931
Bst6I CTCTTC 2 cut(s) 51, 731
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 3 cut(s) 349, 831, 919
BstFNI CGCG 1 cut(s) 370
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 4 cut(s) 342, 374, 388, 761
BstMAI GTCTC 1 cut(s) 518
BstMBI GATC 4 cut(s) 339, 371, 385, 758
BstMWI GCNNNNNNNGC 5 cut(s) 26, 80, 229, 367, 720
BstNI CCWGG 2 cut(s) 214, 726
BstSCI CCNGG 2 cut(s) 212, 724
BstSFI CTRYAG 2 cut(s) 408, 930
BstUI CGCG 1 cut(s) 370
BstV1I GCAGC 1 cut(s) 584
BstV2I GAAGAC 7 cut(s) 144, 150, 156, 162, 186, 240, 268
BstX2I RGATCY 3 cut(s) 339, 385, 758
BstYI RGATCY 3 cut(s) 339, 385, 758
BsuRI GGCC 4 cut(s) 20, 651, 723, 895
Cac8I GCNNGC 1 cut(s) 42
CfoI GCGC 1 cut(s) 370
Cfr13I GGNCC 4 cut(s) 96, 698, 722, 893
CpoI CGGWCCG 1 cut(s) 96
CspCI CAANNNNNGTGG 2 cut(s) 663, 698
CspI CGGWCCG 1 cut(s) 96
DdeI CTNAG 3 cut(s) 349, 831, 919
DpnI GATC 4 cut(s) 341, 373, 387, 760
DpnII GATC 4 cut(s) 339, 371, 385, 758
DriI GACNNNNNGTC 2 cut(s) 214, 272
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 51, 731
Eam1105I GACNNNNNGTC 2 cut(s) 214, 272
EarI CTCTTC 2 cut(s) 51, 731
EciI GGCGGA 3 cut(s) 67, 117, 138
Eco47I GGWCC 2 cut(s) 96, 698
Eco57I CTGAAG 1 cut(s) 347
Eco88I CYCGRG 1 cut(s) 690
EcoRII CCWGG 2 cut(s) 212, 724
FaiI YATR 8 cut(s) 416, 563, 617, 663, 665, 876, 898, 900
FauI CCCGC 1 cut(s) 864
FauNDI CATATG 1 cut(s) 898
FblI GTMKAC 1 cut(s) 419
Fnu4HI GCNGC 4 cut(s) 30, 81, 322, 573
Fsp4HI GCNGC 4 cut(s) 30, 81, 322, 573
FspBI CTAG 1 cut(s) 943
GlaI GCGC 1 cut(s) 369
GluI GCNGC 4 cut(s) 30, 81, 322, 573
GsaI CCCAGC 1 cut(s) 714
HaeIII GGCC 4 cut(s) 20, 651, 723, 895
HapII CCGG 3 cut(s) 17, 99, 120
HhaI GCGC 1 cut(s) 370
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 6 cut(s) 128, 209, 267, 751, 802, 905
HpaII CCGG 3 cut(s) 17, 99, 120
HphI GGTGA 3 cut(s) 589, 630, 740
Hpy166II GTNNAC 5 cut(s) 266, 420, 426, 607, 801
Hpy188I TCNGA 4 cut(s) 61, 208, 259, 523
Hpy188III TCNNGA 2 cut(s) 479, 937
Hpy8I GTNNAC 5 cut(s) 266, 420, 426, 607, 801
Hpy99I CGWCG 6 cut(s) 29, 238, 241, 244, 247, 259
HpyAV CCTTC 3 cut(s) 641, 829, 884
HpyCH4III ACNGT 3 cut(s) 25, 263, 931
HpyCH4IV ACGT 2 cut(s) 273, 422
HpyCH4V TGCA 2 cut(s) 489, 536
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 80, 229, 367, 720
HpyF3I CTNAG 3 cut(s) 349, 831, 919
HpySE526I ACGT 2 cut(s) 273, 422
HspAI GCGC 1 cut(s) 368
Kzo9I GATC 4 cut(s) 339, 371, 385, 758
LguI GCTCTTC 1 cut(s) 51
Lsp1109I GCAGC 1 cut(s) 584
LweI GCATC 4 cut(s) 464, 498, 523, 723
MaeI CTAG 1 cut(s) 943
MaeII ACGT 2 cut(s) 273, 422
MaeIII GTNAC 6 cut(s) 508, 589, 636, 670, 728, 925
MalI GATC 4 cut(s) 341, 373, 387, 760
MboI GATC 4 cut(s) 339, 371, 385, 758
MflI RGATCY 3 cut(s) 339, 385, 758
MluCI AATT 3 cut(s) 67, 578, 675
MlyI GAGTC 4 cut(s) 203, 261, 760, 796
MmeI TCCRAC 2 cut(s) 84, 237
MnlI CCTC 9 cut(s) 85, 127, 262, 686, 689, 778, 784, 816, 858
MseI TTAA 3 cut(s) 287, 390, 846
MslI CAYNNNNRTG 1 cut(s) 602
MspA1I CMGCKG 1 cut(s) 324
MspI CCGG 3 cut(s) 17, 99, 120
MspR9I CCNGG 2 cut(s) 214, 726
MvaI CCWGG 2 cut(s) 214, 726
MvnI CGCG 1 cut(s) 370
MwoI GCNNNNNNNGC 5 cut(s) 26, 80, 229, 367, 720
NdeI CATATG 1 cut(s) 898
NdeII GATC 4 cut(s) 339, 371, 385, 758
NlaIV GGNNCC 2 cut(s) 224, 760
NmuCI GTSAC 3 cut(s) 589, 636, 728
OliI CACNNNNGTG 1 cut(s) 602
PaeR7I CTCGAG 1 cut(s) 690
PciSI GCTCTTC 1 cut(s) 51
PcsI WCGNNNNNNNCGW 3 cut(s) 236, 242, 251
PfeI GAWTC 2 cut(s) 128, 905
PflMI CCANNNNNTGG 1 cut(s) 781
PkrI GCNGC 4 cut(s) 31, 82, 323, 574
PleI GAGTC 4 cut(s) 203, 261, 759, 796
PpsI GAGTC 4 cut(s) 203, 261, 759, 796
Psp6I CCWGG 2 cut(s) 212, 724
PspFI CCCAGC 1 cut(s) 710
PspGI CCWGG 2 cut(s) 212, 724
PspN4I GGNNCC 2 cut(s) 224, 760
PspPI GGNCC 4 cut(s) 96, 698, 722, 893
PspXI VCTCGAGB 1 cut(s) 690
PsuI RGATCY 3 cut(s) 339, 385, 758
RseI CAYNNNNRTG 1 cut(s) 602
Rsr2I CGGWCCG 1 cut(s) 96
RsrII CGGWCCG 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 3 cut(s) 287, 390, 846
SatI GCNGC 4 cut(s) 30, 81, 322, 573
Sau3AI GATC 4 cut(s) 339, 371, 385, 758
Sau96I GGNCC 4 cut(s) 96, 698, 722, 893
SchI GAGTC 4 cut(s) 203, 261, 760, 796
ScrFI CCNGG 2 cut(s) 214, 726
SetI ASST 6 cut(s) 276, 363, 425, 577, 795, 944
SfaNI GCATC 4 cut(s) 464, 498, 523, 723
SfcI CTRYAG 2 cut(s) 408, 930
Sfr274I CTCGAG 1 cut(s) 690
SinI GGWCC 2 cut(s) 96, 698
SlaI CTCGAG 1 cut(s) 690
SmiMI CAYNNNNRTG 1 cut(s) 602
SmlI CTYRAG 2 cut(s) 493, 690
SmoI CTYRAG 2 cut(s) 493, 690
Sse9I AATT 3 cut(s) 67, 578, 675
SspMI CTAG 1 cut(s) 943
StyD4I CCNGG 2 cut(s) 212, 724
TaaI ACNGT 3 cut(s) 25, 263, 931
TaiI ACGT 2 cut(s) 276, 425
TaqI TCGA 4 cut(s) 394, 514, 691, 770
TasI AATT 3 cut(s) 67, 578, 675
TauI GCSGC 3 cut(s) 32, 83, 324
TfiI GAWTC 2 cut(s) 128, 905
Tru1I TTAA 3 cut(s) 287, 390, 846
Tru9I TTAA 3 cut(s) 287, 390, 846
TseFI GTSAC 3 cut(s) 589, 636, 728
TseI GCWGC 1 cut(s) 572
Tsp45I GTSAC 3 cut(s) 589, 636, 728
TspDTI ATGAA 9 cut(s) 43, 126, 132, 162, 168, 192, 492, 600, 660
Van91I CCANNNNNTGG 1 cut(s) 781
VpaK11BI GGWCC 2 cut(s) 96, 698
XapI RAATTY 1 cut(s) 578
XhoI CTCGAG 1 cut(s) 690
XmiI GTMKAC 1 cut(s) 419
XspI CTAG 1 cut(s) 943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.