Rh3CG040000

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000368
Physical Location & Seq
Reverse (-)
2709120 .. 2712435
3316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG040000.1

Sequence Viewer

Length: 537 bp
ATGTCTATGTCTACGGGTTTGAGCCATCTTTTGACAGGGGCATCAACATCTTTGCTTCGCAATCTTGATTATTGCATCTCAAGTTATTCATCTGTTACTCGAAAGTCCGAGACAGAAGATGCAGAGCAATGCTTCAAACAACTTTCTATGGAAGAAGCAGCTAAATTTGATGAAGTGACACTTGCCAATGTGAACAACTTTATAGTGCGTTCAACAAGCCAGTCACCAAATGAAGGCCACAAAGAATATATAGTGGTTACAGTTTTGGTGGCTACTCGAGGTGCACCAAAGTTGCCCAGCATTAATGGCCCTGGTGACTTGAAGAAAGCATTACAGAGTCTTGGATCCATTCCCTCGAACCAAATACTGGCGGTTGAGGTCTTGTGGACTCCTCAACAAGAAAATGATACTTTGACTGAGAAGGAACTACTTAAGGATTACCCGCAGTTGAGGGGCTTTTATGATGGAGGGTCACTTGAAGAAGGGCCATATGACGATTCCCACCCGTTCTTAGGCGTTACTGTAGTCAAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

178

Amino Acids

19.46

Weight (kDa)

4.86

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 3 - 151 9.7e-48 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 367
AccI GTMKAC 1 cut(s) 11
AciI CCGC 2 cut(s) 371, 443
AclWI GGATC 2 cut(s) 339, 352
AcsI RAATTY 1 cut(s) 164
AfiI CCNNNNNNNGG 3 cut(s) 233, 367, 512
AflII CTTAAG 1 cut(s) 431
AgsI TTSAA 4 cut(s) 136, 213, 322, 479
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 2 cut(s) 161, 534
AluI AGCT 2 cut(s) 161, 534
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 1 cut(s) 104
Alw44I GTGCAC 1 cut(s) 282
AlwI GGATC 2 cut(s) 339, 352
Ama87I CYCGRG 1 cut(s) 276
AoxI GGCC 3 cut(s) 235, 307, 485
ApaLI GTGCAC 1 cut(s) 282
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 164
AseI ATTAAT 1 cut(s) 303
AspS9I GGNCC 2 cut(s) 308, 485
AsuHPI GGTGA 2 cut(s) 216, 326
AvaI CYCGRG 1 cut(s) 276
BaeGI GKGCMC 1 cut(s) 286
BamHI GGATCC 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 1 cut(s) 170
BccI CCATC 2 cut(s) 33, 458
BciT130I CCWGG 1 cut(s) 312
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 1 cut(s) 535
BfmI CTRYAG 1 cut(s) 522
BfrI CTTAAG 1 cut(s) 431
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme1390I CCNGG 1 cut(s) 312
BmeT110I CYCGRG 1 cut(s) 276
BmgT120I GGNCC 2 cut(s) 308, 485
BmiI GGNNCC 1 cut(s) 346
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 3 cut(s) 50, 84, 109
BpuEI CTTGAG 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 310
Bsc4I CCNNNNNNNGG 3 cut(s) 233, 367, 512
Bse1I ACTGG 2 cut(s) 220, 372
Bse3DI GCAATG 1 cut(s) 134
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 310
BseLI CCNNNNNNNGG 3 cut(s) 233, 367, 512
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 408
BseNI ACTGG 2 cut(s) 220, 372
BseRI GAGGAG 1 cut(s) 381
BseSI GKGCMC 1 cut(s) 286
BseXI GCAGC 1 cut(s) 170
BseYI CCCAGC 1 cut(s) 296
BshFI GGCC 3 cut(s) 237, 309, 487
BsiHKAI GWGCWC 1 cut(s) 286
BsiHKCI CYCGRG 1 cut(s) 276
BslI CCNNNNNNNGG 3 cut(s) 233, 367, 512
BsmAI GTCTC 1 cut(s) 104
BsnI GGCC 3 cut(s) 237, 309, 487
BsoBI CYCGRG 1 cut(s) 276
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 1 cut(s) 344
BspACI CCGC 2 cut(s) 371, 443
BspANI GGCC 3 cut(s) 237, 309, 487
BspCNI CTCAG 1 cut(s) 409
BspLI GGNNCC 1 cut(s) 346
BspPI GGATC 2 cut(s) 339, 352
BspTI CTTAAG 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 134
BsrI ACTGG 2 cut(s) 220, 372
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 1 cut(s) 344
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 2 cut(s) 262, 523
BstAFI CTTAAG 1 cut(s) 431
BstDEI CTNAG 2 cut(s) 417, 511
BstKTI GATC 1 cut(s) 347
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 1 cut(s) 344
BstMWI GCNNNNNNNGC 1 cut(s) 306
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 1 cut(s) 522
BstSLI GKGCMC 1 cut(s) 286
BstV1I GCAGC 1 cut(s) 170
BstX2I RGATCY 1 cut(s) 344
BstYI RGATCY 1 cut(s) 344
BsuRI GGCC 3 cut(s) 237, 309, 487
Cfr13I GGNCC 2 cut(s) 308, 485
CviJI RGCY 9 cut(s) 24, 161, 219, 237, 272, 309, 456, 487, 534
CviKI_1 RGCY 9 cut(s) 24, 161, 219, 237, 272, 309, 456, 487, 534
DdeI CTNAG 2 cut(s) 417, 511
DpnI GATC 1 cut(s) 346
DpnII GATC 1 cut(s) 344
Eco88I CYCGRG 1 cut(s) 276
EcoRII CCWGG 1 cut(s) 310
FaiI YATR 8 cut(s) 8, 149, 203, 249, 251, 462, 490, 492
FalI AAGNNNNNCTT 2 cut(s) 165, 197
FauI CCCGC 1 cut(s) 450
FauNDI CATATG 1 cut(s) 490
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 1 cut(s) 535
GluI GCNGC 1 cut(s) 159
GsaI CCCAGC 1 cut(s) 300
HaeIII GGCC 3 cut(s) 237, 309, 487
HinfI GANTC 3 cut(s) 337, 388, 497
HphI GGTGA 2 cut(s) 216, 326
Hpy166II GTNNAC 4 cut(s) 12, 193, 284, 387
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 2 cut(s) 65, 529
Hpy8I GTNNAC 4 cut(s) 12, 193, 284, 387
HpyAV CCTTC 3 cut(s) 227, 415, 476
HpyCH4III ACNGT 2 cut(s) 262, 523
HpyCH4V TGCA 3 cut(s) 75, 122, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 306
HpyF3I CTNAG 2 cut(s) 417, 511
Kzo9I GATC 1 cut(s) 344
LpnPI CCDG 6 cut(s) 21, 233, 297, 310, 324, 353
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 3 cut(s) 50, 84, 109
MaeI CTAG 1 cut(s) 535
MaeIII GTNAC 7 cut(s) 94, 175, 222, 256, 314, 471, 517
MalI GATC 1 cut(s) 346
MboI GATC 1 cut(s) 344
MboII GAAGA 4 cut(s) 128, 164, 334, 491
MflI RGATCY 1 cut(s) 344
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 1 cut(s) 164
MlyI GAGTC 2 cut(s) 346, 382
MnlI CCTC 6 cut(s) 272, 364, 370, 402, 444, 461
MseI TTAA 2 cut(s) 303, 432
MspCI CTTAAG 1 cut(s) 431
MspR9I CCNGG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 306
NdeI CATATG 1 cut(s) 490
NdeII GATC 1 cut(s) 344
NlaIV GGNNCC 1 cut(s) 346
NmuCI GTSAC 4 cut(s) 175, 222, 314, 471
PaeR7I CTCGAG 1 cut(s) 276
PfeI GAWTC 1 cut(s) 497
PflMI CCANNNNNTGG 1 cut(s) 367
PkrI GCNGC 1 cut(s) 160
PleI GAGTC 2 cut(s) 345, 382
PpsI GAGTC 2 cut(s) 345, 382
PshBI ATTAAT 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 310
PspFI CCCAGC 1 cut(s) 296
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 2 cut(s) 308, 485
PspXI VCTCGAGB 1 cut(s) 276
PsuI RGATCY 1 cut(s) 344
SaqAI TTAA 2 cut(s) 303, 432
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 1 cut(s) 344
Sau96I GGNCC 2 cut(s) 308, 485
SchI GAGTC 2 cut(s) 346, 382
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 1 cut(s) 286
SetI ASST 4 cut(s) 163, 283, 381, 536
SfaNI GCATC 3 cut(s) 50, 84, 109
SfcI CTRYAG 1 cut(s) 522
Sfr274I CTCGAG 1 cut(s) 276
SlaI CTCGAG 1 cut(s) 276
SmlI CTYRAG 3 cut(s) 79, 276, 431
SmoI CTYRAG 3 cut(s) 79, 276, 431
Sse9I AATT 1 cut(s) 164
SsiI CCGC 2 cut(s) 371, 443
SspMI CTAG 1 cut(s) 535
StyD4I CCNGG 1 cut(s) 310
TaaI ACNGT 2 cut(s) 262, 523
TaqI TCGA 3 cut(s) 100, 277, 356
TasI AATT 1 cut(s) 164
TfiI GAWTC 1 cut(s) 497
Tru1I TTAA 2 cut(s) 303, 432
Tru9I TTAA 2 cut(s) 303, 432
TseFI GTSAC 4 cut(s) 175, 222, 314, 471
TseI GCWGC 1 cut(s) 158
Tsp45I GTSAC 4 cut(s) 175, 222, 314, 471
TspDTI ATGAA 3 cut(s) 78, 186, 246
Van91I CCANNNNNTGG 1 cut(s) 367
Vha464I CTTAAG 1 cut(s) 431
VneI GTGCAC 1 cut(s) 282
VspI ATTAAT 1 cut(s) 303
XapI RAATTY 1 cut(s) 164
XhoI CTCGAG 1 cut(s) 276
XmiI GTMKAC 1 cut(s) 11
XspI CTAG 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.