Rroxscaffold_6G00429170

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000368
Physical Location & Seq
Reverse (-)
49512934 .. 49515426
2493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00429170.1

Sequence Viewer

Length: 909 bp
ATGGCTCTTGGTCAACTTTTTATCCAAGGAACATACTTGAGGTTATCGCCTATAAGATTTTTAAAAGCTCTCAGGGTGTTTAGGAGACTCACAATGGCAGCCATACTGTTGTGTTTTTTGTTGATGTATCATTTGAATCCAGCATTGGCTGCCTCAGGTGGATCGGTCGGCGGAGATTCTTGGTCGGATTCCGATTCCAATTCCAATTCTGATTCGGATTCGTATCTTTATCCCTCGGATTCGGATTCATGGTTGCACCCATCATCAAGTCCTTCGAAAACGAATTCGCCCGAGGAGGGTAAAGGTCAGGCAGTTTTTTGTTTGTTGATTATGGGGGCAATTGTGGTGTTGGGGTTTACATGTTCATCAAGATCTACTGCCACTGTTGTCAAGCTTCAGGTTGGTCTGTTGAGCACAGCGCGAACACTCCAAAAGGATCTTGATCACATAGCTGAAACTGCAGATACGTCTACTCACAAGGATTTGAGCCGTGTTTTGACAGAGGCAACAGCAGCTTTGCTTCGCCATCCTCATCATTGTATCTCAGGCTATTCTTCTGTGGCTCCCAAAGAAAGTGTGAAGGATGCACAAAAATTCTTTAATCAAGTTTCATTGGAAGAGAGGGCTAAATTTGACGAAGAGACACTTGTTAATGTGAACAACATAAAAAGGAAAAGTACAACCAAGAGACTTAAGGGATTGCAAAATCAATATATAGTGGTATGTTTTGTATTTGATTTAATCCTTGAGGCTAGGGATATCTTAATGGTTACTGTTCTCGTGGGTGTGAAAGGAATGCACAAATTTCAGGCCATCAATGATAATAGTGACTTAAACGAAGCCTTGCAAAATCTCAGATCCATTCCCTCACGCAGTACGAGTGTTATGGACTCCTCAACAGGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

302

Amino Acids

33.11

Weight (kDa)

8.54

Isoelectric Point (pI)

54.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 127 - 291 6e-41 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 470
AccII CGCG 1 cut(s) 421
AciI CCGC 1 cut(s) 171
AclWI GGATC 3 cut(s) 169, 444, 852
AcsI RAATTY 4 cut(s) 283, 593, 629, 803
AcuI CTGAAG 1 cut(s) 380
AfaI GTAC 2 cut(s) 679, 877
AfiI CCNNNNNNNGG 1 cut(s) 296
AflII CTTAAG 1 cut(s) 692
AflIII ACRYGT 1 cut(s) 359
AgsI TTSAA 1 cut(s) 136
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AluBI AGCT 4 cut(s) 68, 394, 452, 515
AluI AGCT 4 cut(s) 68, 394, 452, 515
Alw21I GWGCWC 1 cut(s) 416
Alw26I GTCTC 3 cut(s) 79, 635, 682
AlwI GGATC 3 cut(s) 169, 444, 852
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 1 cut(s) 810
ApeKI GCWGC 3 cut(s) 98, 149, 512
ApoI RAATTY 4 cut(s) 283, 593, 629, 803
AspLEI GCGC 1 cut(s) 421
AsuII TTCGAA 1 cut(s) 275
AvaI CYCGRG 1 cut(s) 290
AxyI CCTNAGG 1 cut(s) 154
BauI CACGAG 1 cut(s) 779
Bbv12I GWGCWC 1 cut(s) 416
BbvI GCAGC 3 cut(s) 110, 136, 524
BccI CCATC 3 cut(s) 268, 534, 821
BceAI ACGGC 1 cut(s) 474
BclI TGATCA 1 cut(s) 442
BcoDI GTCTC 3 cut(s) 79, 635, 682
BfaI CTAG 1 cut(s) 753
BfmI CTRYAG 1 cut(s) 459
BfrI CTTAAG 1 cut(s) 692
BglII AGATCT 1 cut(s) 371
BisI GCNGC 3 cut(s) 99, 150, 513
BlsI GCNGC 3 cut(s) 100, 151, 514
BmeT110I CYCGRG 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 564
BmsI GCATC 1 cut(s) 574
Bpu14I TTCGAA 1 cut(s) 275
BpuEI CTTGAG 2 cut(s) 58, 767
BsaBI GATNNNNATC 2 cut(s) 222, 441
BsaJI CCNNGG 3 cut(s) 25, 234, 291
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse21I CCTNAGG 1 cut(s) 154
Bse8I GATNNNNATC 2 cut(s) 222, 441
BseDI CCNNGG 3 cut(s) 25, 234, 291
BseGI GGATG 2 cut(s) 526, 589
BseJI GATNNNNATC 2 cut(s) 222, 441
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMII CTCAG 4 cut(s) 85, 168, 558, 868
BseRI GAGGAG 2 cut(s) 308, 883
BseXI GCAGC 3 cut(s) 110, 136, 524
Bsh1236I CGCG 1 cut(s) 421
Bsh1285I CGRYCG 1 cut(s) 168
BshFI GGCC 1 cut(s) 812
BsiEI CGRYCG 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 416
BsiHKCI CYCGRG 1 cut(s) 290
BslI CCNNNNNNNGG 1 cut(s) 296
BsmAI GTCTC 3 cut(s) 79, 635, 682
BsmI GAATGC 1 cut(s) 801
BsnI GGCC 1 cut(s) 812
BsoBI CYCGRG 1 cut(s) 290
Bsp119I TTCGAA 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 416
Bsp143I GATC 5 cut(s) 161, 371, 436, 442, 857
BspACI CCGC 1 cut(s) 171
BspANI GGCC 1 cut(s) 812
BspCNI CTCAG 4 cut(s) 84, 167, 557, 867
BspFNI CGCG 1 cut(s) 421
BspLI GGNNCC 1 cut(s) 564
BspMAI CTGCAG 1 cut(s) 463
BspPI GGATC 3 cut(s) 169, 444, 852
BspT104I TTCGAA 1 cut(s) 275
BspTI CTTAAG 1 cut(s) 692
BssECI CCNNGG 3 cut(s) 25, 234, 291
BssMI GATC 5 cut(s) 161, 371, 436, 442, 857
BssSI CACGAG 1 cut(s) 779
BssT1I CCWWGG 1 cut(s) 25
Bst2BI CACGAG 1 cut(s) 779
Bst4CI ACNGT 3 cut(s) 108, 385, 775
Bst6I CTCTTC 2 cut(s) 612, 633
BstAFI CTTAAG 1 cut(s) 692
BstAPI GCANNNNNTGC 1 cut(s) 149
BstBI TTCGAA 1 cut(s) 275
BstDEI CTNAG 4 cut(s) 71, 154, 544, 854
BstF5I GGATG 2 cut(s) 526, 589
BstFNI CGCG 1 cut(s) 421
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 5 cut(s) 164, 374, 439, 445, 860
BstMAI GTCTC 3 cut(s) 79, 635, 682
BstMBI GATC 5 cut(s) 161, 371, 436, 442, 857
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 3 cut(s) 149, 458, 512
BstNSI RCATGY 1 cut(s) 363
BstSFI CTRYAG 1 cut(s) 459
BstUI CGCG 1 cut(s) 421
BstV1I GCAGC 3 cut(s) 110, 136, 524
BstX2I RGATCY 3 cut(s) 371, 436, 857
BstYI RGATCY 3 cut(s) 371, 436, 857
Bsu36I CCTNAGG 1 cut(s) 154
BsuRI GGCC 1 cut(s) 812
BtsCI GGATG 2 cut(s) 526, 589
BtsIMutI CAGTG 1 cut(s) 381
CfoI GCGC 1 cut(s) 421
Csp6I GTAC 2 cut(s) 678, 876
CviAII CATG 2 cut(s) 249, 360
CviQI GTAC 2 cut(s) 678, 876
DdeI CTNAG 4 cut(s) 71, 154, 544, 854
DpnI GATC 5 cut(s) 163, 373, 438, 444, 859
DpnII GATC 5 cut(s) 161, 371, 436, 442, 857
DraI TTTAAA 1 cut(s) 63
Eam1104I CTCTTC 2 cut(s) 612, 633
EarI CTCTTC 2 cut(s) 612, 633
EciI GGCGGA 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 25
Eco32I GATATC 1 cut(s) 760
Eco57I CTGAAG 1 cut(s) 380
Eco81I CCTNAGG 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 290
EcoRI GAATTC 1 cut(s) 283
EcoRV GATATC 1 cut(s) 760
EcoT14I CCWWGG 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 2 cut(s) 252, 363
FalI AAGNNNNNCTT 2 cut(s) 630, 662
FatI CATG 2 cut(s) 248, 359
FbaI TGATCA 1 cut(s) 442
FblI GTMKAC 1 cut(s) 470
Fnu4HI GCNGC 3 cut(s) 99, 150, 513
FokI GGATG 2 cut(s) 513, 596
Fsp4HI GCNGC 3 cut(s) 99, 150, 513
FspBI CTAG 1 cut(s) 753
GlaI GCGC 1 cut(s) 420
GluI GCNGC 3 cut(s) 99, 150, 513
HaeIII GGCC 1 cut(s) 812
HhaI GCGC 1 cut(s) 421
Hin1II CATG 2 cut(s) 252, 363
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HincII GTYRAC 1 cut(s) 14
HindII GTYRAC 1 cut(s) 14
HindIII AAGCTT 1 cut(s) 392
Hpy166II GTNNAC 4 cut(s) 14, 357, 471, 658
Hpy188I TCNGA 7 cut(s) 187, 193, 211, 217, 238, 244, 857
Hpy188III TCNNGA 2 cut(s) 369, 440
Hpy8I GTNNAC 4 cut(s) 14, 357, 471, 658
HpyAV CCTTC 2 cut(s) 282, 574
HpyCH4III ACNGT 3 cut(s) 108, 385, 775
HpyCH4IV ACGT 1 cut(s) 467
HpyCH4V TGCA 6 cut(s) 256, 461, 587, 703, 799, 847
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 458, 512
HpyF3I CTNAG 4 cut(s) 71, 154, 544, 854
HpySE526I ACGT 1 cut(s) 467
Hsp92II CATG 2 cut(s) 252, 363
HspAI GCGC 1 cut(s) 419
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 5 cut(s) 161, 371, 436, 442, 857
LmnI GCTCC 1 cut(s) 568
LpnPI CCDG 8 cut(s) 58, 141, 153, 293, 383, 531, 794, 885
Lsp1109I GCAGC 3 cut(s) 110, 136, 524
LweI GCATC 1 cut(s) 574
MaeI CTAG 1 cut(s) 753
MaeII ACGT 1 cut(s) 467
MaeIII GTNAC 2 cut(s) 769, 827
MalI GATC 5 cut(s) 163, 373, 438, 444, 859
MboI GATC 5 cut(s) 161, 371, 436, 442, 857
MboII GAAGA 3 cut(s) 546, 629, 650
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 3 cut(s) 371, 436, 857
MhlI GDGCHC 1 cut(s) 416
MluCI AATT 7 cut(s) 199, 205, 283, 339, 593, 629, 803
MlyI GAGTC 2 cut(s) 81, 884
MmeI TCCRAC 1 cut(s) 165
MseI TTAA 7 cut(s) 62, 600, 651, 693, 740, 764, 833
MspCI CTTAAG 1 cut(s) 692
MunI CAATTG 1 cut(s) 339
Mva1269I GAATGC 1 cut(s) 801
MvnI CGCG 1 cut(s) 421
MwoI GCNNNNNNNGC 3 cut(s) 149, 458, 512
NdeII GATC 5 cut(s) 161, 371, 436, 442, 857
NlaIII CATG 2 cut(s) 252, 363
NlaIV GGNNCC 1 cut(s) 564
NmuCI GTSAC 1 cut(s) 827
NspI RCATGY 1 cut(s) 363
NspV TTCGAA 1 cut(s) 275
PciI ACATGT 1 cut(s) 359
PctI GAATGC 1 cut(s) 801
PfeI GAWTC 8 cut(s) 136, 176, 188, 194, 212, 218, 239, 245
PkrI GCNGC 3 cut(s) 100, 151, 514
PleI GAGTC 2 cut(s) 81, 884
PpsI GAGTC 2 cut(s) 81, 884
PscI ACATGT 1 cut(s) 359
PspN4I GGNNCC 1 cut(s) 564
PstI CTGCAG 1 cut(s) 463
PsuI RGATCY 3 cut(s) 371, 436, 857
RsaI GTAC 2 cut(s) 679, 877
RsaNI GTAC 2 cut(s) 678, 876
SaqAI TTAA 7 cut(s) 62, 600, 651, 693, 740, 764, 833
SatI GCNGC 3 cut(s) 99, 150, 513
Sau3AI GATC 5 cut(s) 161, 371, 436, 442, 857
SchI GAGTC 2 cut(s) 81, 884
SduI GDGCHC 1 cut(s) 416
SetI ASST 9 cut(s) 44, 70, 160, 307, 396, 402, 454, 470, 517
SfaNI GCATC 1 cut(s) 574
SfcI CTRYAG 1 cut(s) 459
SfuI TTCGAA 1 cut(s) 275
SmlI CTYRAG 3 cut(s) 37, 692, 746
SmoI CTYRAG 3 cut(s) 37, 692, 746
Sse9I AATT 7 cut(s) 199, 205, 283, 339, 593, 629, 803
SsiI CCGC 1 cut(s) 171
SspMI CTAG 1 cut(s) 753
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 3 cut(s) 108, 385, 775
TaiI ACGT 1 cut(s) 470
TaqI TCGA 1 cut(s) 275
TaqII GACCGA 1 cut(s) 154
TasI AATT 7 cut(s) 199, 205, 283, 339, 593, 629, 803
TatI WGTACW 1 cut(s) 677
TfiI GAWTC 8 cut(s) 136, 176, 188, 194, 212, 218, 239, 245
Tru1I TTAA 7 cut(s) 62, 600, 651, 693, 740, 764, 833
Tru9I TTAA 7 cut(s) 62, 600, 651, 693, 740, 764, 833
TscAI CASTG 1 cut(s) 388
TseFI GTSAC 1 cut(s) 827
TseI GCWGC 3 cut(s) 98, 149, 512
Tsp45I GTSAC 1 cut(s) 827
TspDTI ATGAA 3 cut(s) 237, 354, 600
TspRI CASTG 1 cut(s) 388
Vha464I CTTAAG 1 cut(s) 692
XapI RAATTY 4 cut(s) 283, 593, 629, 803
XceI RCATGY 1 cut(s) 363
XmiI GTMKAC 1 cut(s) 470
XspI CTAG 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.