RchiOBHm_Chr3g0452111

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000368
Physical Location & Seq
Reverse (-)
2904878 .. 2907833
2956 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41932

Sequence Viewer

Length: 951 bp
ATGGCGTTGAGAAATCCGGCCACCGTCGCCGCGTTATTGCTCGCTCTGCTATTGATTTCCGACCCCAATTTCGCGTCCGCCGCTACGGGTGGGCGGTCCGGCGGAAGCCTGTTCCCCTCCGGCGGAGATTCTTCTTCTTCTTCGTCTTCGTCTTCGTCTTCGTCTTCATCGTGGTCGGGGTCTTCGGGTTCATCGGACTCTTGGTCGTGGCACCGCTCGCCGTCGTCGCCGTCTTCCTCGTCGGACGGTGGACTCTACGTCTTCTTGGTTTTAATGGCGGTTGTGGTTGGTGTGGCGGTCATCTGCCGCTGTGCTGGTGTTGGGAAAACAAGCGTCGTCAAGCTTCAGGTTGGTCTGGTGGGCAAGGCGCAATCACTTCAAAAAGATCTTAATCGACTTACTGAAACTACAGATATGTCTACGTCTACGGGTTTGAGCCATCTTTTGACAGGGGCATCAACATCTTTGCTTCACAATCTTGATTATTGCATCTCAAGTTATTCATCTGTTACTCGAAAGTCTGAGACAGAAGATGCAGAGCAATGCTTCAAACAACTCTCTATGGAAGAAGCAGCTAAATTTGATGAAGTGACACTCGCCAATGTGAACAACTTTATTGTGCGTTCAACAAGCCAGTCACCAAATGAAGTCCACAAAGAATATATAGTGGTTACGATTTTGGTGGCTACTCGAGGAGCACCAAAGTTGCCCAGCATCAATGGCTCTGGTGACTTGAAGAAAGCATTACAGAGTCTTGGATCCATTCCCTCTAATCAAATACTGGCGGTTGAGGTCTTGTGGACTCCTCAACAAGAAAATGATACTTTGATTGAGAAGGAACTACTTAAAGACTACCCGCAGTTGAGGGGCTTTTATGATGAAGGGTCACTTGAAGAAGGGCCATATGACGATTCCCACCCGTTCTTAGGGGTTACTGTTGTCAAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

316

Amino Acids

33.32

Weight (kDa)

5.16

Isoelectric Point (pI)

59.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 110 - 289 2.4e-58 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 210
AccBSI CCGCTC 1 cut(s) 216
AccI GTMKAC 2 cut(s) 419, 425
AccII CGCG 2 cut(s) 32, 74
AclWI GGATC 2 cut(s) 753, 766
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 1 cut(s) 578
AcuI CTGAAG 1 cut(s) 329
AfiI CCNNNNNNNGG 2 cut(s) 122, 926
AgsI TTSAA 5 cut(s) 380, 550, 627, 736, 893
AhdI GACNNNNNGTC 2 cut(s) 202, 257
AluBI AGCT 3 cut(s) 343, 575, 948
AluI AGCT 3 cut(s) 343, 575, 948
Alw21I GWGCWC 1 cut(s) 700
Alw26I GTCTC 1 cut(s) 518
AlwI GGATC 2 cut(s) 753, 766
Ama87I CYCGRG 1 cut(s) 690
AoxI GGCC 2 cut(s) 18, 899
ApeKI GCWGC 1 cut(s) 572
ApoI RAATTY 1 cut(s) 578
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 2 cut(s) 96, 899
AsuHPI GGTGA 2 cut(s) 630, 740
AvaI CYCGRG 1 cut(s) 690
AvaII GGWCC 1 cut(s) 96
BamHI GGATCC 1 cut(s) 758
BanI GGYRCC 1 cut(s) 210
BbsI GAAGAC 7 cut(s) 138, 144, 150, 156, 174, 225, 253
Bbv12I GWGCWC 1 cut(s) 700
BbvI GCAGC 1 cut(s) 584
BccI CCATC 1 cut(s) 447
BceAI ACGGC 2 cut(s) 205, 214
BcoDI GTCTC 1 cut(s) 518
BfaI CTAG 1 cut(s) 949
BfmI CTRYAG 1 cut(s) 408
BglII AGATCT 1 cut(s) 385
BisI GCNGC 4 cut(s) 30, 81, 307, 573
BlsI GCNGC 4 cut(s) 31, 82, 308, 574
Bme18I GGWCC 1 cut(s) 96
BmeRI GACNNNNNGTC 2 cut(s) 202, 257
BmeT110I CYCGRG 1 cut(s) 690
BmgT120I GGNCC 2 cut(s) 96, 899
BmiI GGNNCC 2 cut(s) 212, 760
BmsI GCATC 4 cut(s) 464, 498, 523, 723
BpiI GAAGAC 7 cut(s) 138, 144, 150, 156, 174, 225, 253
BpuEI CTTGAG 1 cut(s) 478
BsaBI GATNNNNATC 1 cut(s) 390
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 926
Bse1I ACTGG 2 cut(s) 634, 786
Bse3DI GCAATG 1 cut(s) 548
Bse8I GATNNNNATC 1 cut(s) 390
BseJI GATNNNNATC 1 cut(s) 390
BseLI CCNNNNNNNGG 2 cut(s) 122, 926
BseMI GCAATG 1 cut(s) 548
BseMII CTCAG 1 cut(s) 513
BseNI ACTGG 2 cut(s) 634, 786
BseRI GAGGAG 2 cut(s) 708, 795
BseXI GCAGC 1 cut(s) 584
BseYI CCCAGC 1 cut(s) 710
Bsh1236I CGCG 2 cut(s) 32, 74
BshFI GGCC 2 cut(s) 20, 901
BshNI GGYRCC 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 700
BsiHKCI CYCGRG 1 cut(s) 690
BsiSI CCGG 3 cut(s) 17, 99, 120
BslI CCNNNNNNNGG 2 cut(s) 122, 926
BsmAI GTCTC 1 cut(s) 518
BsnI GGCC 2 cut(s) 20, 901
BsoBI CYCGRG 1 cut(s) 690
Bsp1286I GDGCHC 1 cut(s) 700
Bsp143I GATC 2 cut(s) 385, 758
BspANI GGCC 2 cut(s) 20, 901
BspCNI CTCAG 1 cut(s) 514
BspFNI CGCG 2 cut(s) 32, 74
BspLI GGNNCC 2 cut(s) 212, 760
BspPI GGATC 2 cut(s) 753, 766
BspT107I GGYRCC 1 cut(s) 210
BsrBI CCGCTC 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 548
BsrI ACTGG 2 cut(s) 634, 786
BssMI GATC 2 cut(s) 385, 758
Bst4CI ACNGT 3 cut(s) 25, 248, 937
BstC8I GCNNGC 2 cut(s) 42, 218
BstDEI CTNAG 2 cut(s) 522, 925
BstFNI CGCG 2 cut(s) 32, 74
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 2 cut(s) 388, 761
BstMAI GTCTC 1 cut(s) 518
BstMBI GATC 2 cut(s) 385, 758
BstMWI GCNNNNNNNGC 6 cut(s) 26, 46, 80, 217, 226, 720
BstSFI CTRYAG 1 cut(s) 408
BstUI CGCG 2 cut(s) 32, 74
BstV1I GCAGC 1 cut(s) 584
BstV2I GAAGAC 7 cut(s) 138, 144, 150, 156, 174, 225, 253
BstX2I RGATCY 2 cut(s) 385, 758
BstYI RGATCY 2 cut(s) 385, 758
BsuRI GGCC 2 cut(s) 20, 901
Cac8I GCNNGC 2 cut(s) 42, 218
CfoI GCGC 1 cut(s) 370
Cfr13I GGNCC 2 cut(s) 96, 899
CpoI CGGWCCG 1 cut(s) 96
CseI GACGC 2 cut(s) 63, 322
CspI CGGWCCG 1 cut(s) 96
DdeI CTNAG 2 cut(s) 522, 925
DpnI GATC 2 cut(s) 387, 760
DpnII GATC 2 cut(s) 385, 758
DriI GACNNNNNGTC 2 cut(s) 202, 257
EaeI YGGCCR 1 cut(s) 18
Eam1105I GACNNNNNGTC 2 cut(s) 202, 257
EciI GGCGGA 3 cut(s) 67, 117, 138
Eco47I GGWCC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 690
FaiI YATR 7 cut(s) 416, 563, 663, 665, 876, 904, 906
FalI AAGNNNNNCTT 2 cut(s) 873, 905
FauI CCCGC 1 cut(s) 864
FauNDI CATATG 1 cut(s) 904
FblI GTMKAC 2 cut(s) 419, 425
Fnu4HI GCNGC 4 cut(s) 30, 81, 307, 573
Fsp4HI GCNGC 4 cut(s) 30, 81, 307, 573
FspBI CTAG 1 cut(s) 949
GlaI GCGC 1 cut(s) 369
GluI GCNGC 4 cut(s) 30, 81, 307, 573
GsaI CCCAGC 1 cut(s) 714
HaeIII GGCC 2 cut(s) 20, 901
HapII CCGG 3 cut(s) 17, 99, 120
HgaI GACGC 2 cut(s) 63, 322
HhaI GCGC 1 cut(s) 370
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 6 cut(s) 128, 197, 252, 751, 802, 911
HpaII CCGG 3 cut(s) 17, 99, 120
HphI GGTGA 2 cut(s) 630, 740
Hpy166II GTNNAC 6 cut(s) 251, 420, 426, 607, 652, 801
Hpy188I TCNGA 4 cut(s) 61, 196, 244, 523
Hpy188III TCNNGA 2 cut(s) 479, 943
Hpy8I GTNNAC 6 cut(s) 251, 420, 426, 607, 652, 801
Hpy99I CGWCG 5 cut(s) 29, 226, 229, 244, 338
HpyAV CCTTC 3 cut(s) 829, 875, 890
HpyCH4III ACNGT 3 cut(s) 25, 248, 937
HpyCH4IV ACGT 2 cut(s) 258, 422
HpyCH4V TGCA 2 cut(s) 489, 536
HpyF10VI GCNNNNNNNGC 6 cut(s) 26, 46, 80, 217, 226, 720
HpyF3I CTNAG 2 cut(s) 522, 925
HpySE526I ACGT 2 cut(s) 258, 422
HspAI GCGC 1 cut(s) 368
Kzo9I GATC 2 cut(s) 385, 758
LmnI GCTCC 1 cut(s) 695
Lsp1109I GCAGC 1 cut(s) 584
LweI GCATC 4 cut(s) 464, 498, 523, 723
MaeI CTAG 1 cut(s) 949
MaeII ACGT 2 cut(s) 258, 422
MaeIII GTNAC 7 cut(s) 508, 589, 636, 670, 728, 885, 931
MalI GATC 2 cut(s) 387, 760
MbiI CCGCTC 1 cut(s) 216
MboI GATC 2 cut(s) 385, 758
MflI RGATCY 2 cut(s) 385, 758
MhlI GDGCHC 1 cut(s) 700
MluCI AATT 2 cut(s) 67, 578
MlyI GAGTC 4 cut(s) 191, 246, 760, 796
MmeI TCCRAC 2 cut(s) 84, 222
MnlI CCTC 7 cut(s) 127, 247, 686, 778, 784, 816, 858
MseI TTAA 3 cut(s) 272, 390, 846
MspA1I CMGCKG 1 cut(s) 309
MspI CCGG 3 cut(s) 17, 99, 120
MvnI CGCG 2 cut(s) 32, 74
MwoI GCNNNNNNNGC 6 cut(s) 26, 46, 80, 217, 226, 720
NdeI CATATG 1 cut(s) 904
NdeII GATC 2 cut(s) 385, 758
NlaIV GGNNCC 2 cut(s) 212, 760
NmuCI GTSAC 4 cut(s) 589, 636, 728, 885
PaeR7I CTCGAG 1 cut(s) 690
PcsI WCGNNNNNNNCGW 1 cut(s) 167
PfeI GAWTC 2 cut(s) 128, 911
PkrI GCNGC 4 cut(s) 31, 82, 308, 574
PleI GAGTC 4 cut(s) 191, 246, 759, 796
PpsI GAGTC 4 cut(s) 191, 246, 759, 796
PspFI CCCAGC 1 cut(s) 710
PspN4I GGNNCC 2 cut(s) 212, 760
PspPI GGNCC 2 cut(s) 96, 899
PspXI VCTCGAGB 1 cut(s) 690
PsuI RGATCY 2 cut(s) 385, 758
Rsr2I CGGWCCG 1 cut(s) 96
RsrII CGGWCCG 1 cut(s) 96
SaqAI TTAA 3 cut(s) 272, 390, 846
SatI GCNGC 4 cut(s) 30, 81, 307, 573
Sau3AI GATC 2 cut(s) 385, 758
Sau96I GGNCC 2 cut(s) 96, 899
SchI GAGTC 4 cut(s) 191, 246, 760, 796
SduI GDGCHC 1 cut(s) 700
SetI ASST 7 cut(s) 261, 345, 351, 425, 577, 795, 950
SfaNI GCATC 4 cut(s) 464, 498, 523, 723
SfcI CTRYAG 1 cut(s) 408
Sfr274I CTCGAG 1 cut(s) 690
SinI GGWCC 1 cut(s) 96
SlaI CTCGAG 1 cut(s) 690
SmlI CTYRAG 2 cut(s) 493, 690
SmoI CTYRAG 2 cut(s) 493, 690
Sse9I AATT 2 cut(s) 67, 578
SspMI CTAG 1 cut(s) 949
TaaI ACNGT 3 cut(s) 25, 248, 937
TaiI ACGT 2 cut(s) 261, 425
TaqI TCGA 3 cut(s) 394, 514, 691
TasI AATT 2 cut(s) 67, 578
TauI GCSGC 3 cut(s) 32, 83, 309
TfiI GAWTC 2 cut(s) 128, 911
Tru1I TTAA 3 cut(s) 272, 390, 846
Tru9I TTAA 3 cut(s) 272, 390, 846
TseFI GTSAC 4 cut(s) 589, 636, 728, 885
TseI GCWGC 1 cut(s) 572
Tsp45I GTSAC 4 cut(s) 589, 636, 728, 885
TspDTI ATGAA 6 cut(s) 156, 180, 492, 600, 660, 894
VpaK11BI GGWCC 1 cut(s) 96
XapI RAATTY 1 cut(s) 578
XhoI CTCGAG 1 cut(s) 690
XmiI GTMKAC 2 cut(s) 419, 425
XspI CTAG 1 cut(s) 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.