RLG00000025628

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000368
Physical Location & Seq
Forward (+)
47171925 .. 47174459
2535 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025628

Sequence Viewer

Length: 912 bp
ATGGCGTTGAGAAATCCGGCCACCGTCGCCGCGTTATTGCTCGCTCTGCTATTGATTTCCGACCCCAATTTCGCGTCCGCCGCTACGGGTGGGCGGTCCGGCGGAAGCCTGTTCCCCTCCGGCGGAGATTCTTCTTCATCTTCGTCTTCATCGTGGTCGGGGTCTTCGGGTTCATCGGACTCTTGGTCGTGGCACCACTCGCCGTCATCGTCGTCTTCCTTGTCGGACGGTGGATTCTACGTCTTCTTGGTTTTAATGGCGGTTGTGGTTGGTGTGGCGGTCATCTGCCGCTGTGCTGGTGTTGGGAAAACAAGCGTCGTCAAGCTTCAGTTAATCAGGCGATTTATAGAATCTGTTGATGGTGAAATTTGTGGCTTCATTATGTCCAATTCCAATGCTGTGGAACATTTATGGGCATCAACATCTCTGCTTCGCAATCTTGATTATTGCATCTCAAGTTATTCATCTGTTACTAGAAAGTCCGAGACAGAAGATGCAGAGCAATGCTTCAAACAACTTTCTATGGAAGAAGCAGCTAAATTTGATGAAGTGACGCTTGCCAATGTGAACAACTTTATAGTGCGTTCAACAAGCCAGTCACCAAATGAAGGCCACAAAGAATATATAGTGGTTACAGTTTTGGTGGCTACTCGAGGTGCACCAAAGTTGCCCAGCATTAATGGCCCTGGTGACTTGAAGAAAGCATTACAGAGTCTTGGATCCATTCCCTCGAACCAAATACTGGCGGTTGAGGTCTTGTGGACTCCTCAACAAGAAAATGATACTTTGACTGAGGAGGAACTACTTAAAGATTACCCGCAGTTGAGGGGCTTTTATGATGGAGGGTCACTTGAAGAAGGGCCATATGACGATTCCCACCCGTTCTTAGGCGTTACTGTAGTCAAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

304

Amino Acids

32.29

Weight (kDa)

4.91

Isoelectric Point (pI)

59.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 139 - 276 7.5e-45 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 192
AccB7I CCANNNNNTGG 1 cut(s) 742
AccII CGCG 2 cut(s) 32, 74
AclWI GGATC 2 cut(s) 714, 727
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 2 cut(s) 366, 539
AcuI CTGAAG 1 cut(s) 311
AfiI CCNNNNNNNGG 4 cut(s) 122, 608, 742, 887
AgsI TTSAA 4 cut(s) 511, 588, 697, 854
AhdI GACNNNNNGTC 1 cut(s) 184
AjnI CCWGG 1 cut(s) 685
AluBI AGCT 3 cut(s) 325, 536, 909
AluI AGCT 3 cut(s) 325, 536, 909
Alw21I GWGCWC 1 cut(s) 661
Alw26I GTCTC 1 cut(s) 479
Alw44I GTGCAC 1 cut(s) 657
AlwI GGATC 2 cut(s) 714, 727
Ama87I CYCGRG 1 cut(s) 651
AoxI GGCC 4 cut(s) 18, 610, 682, 860
ApaLI GTGCAC 1 cut(s) 657
ApeKI GCWGC 1 cut(s) 533
ApoI RAATTY 2 cut(s) 366, 539
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AseI ATTAAT 1 cut(s) 678
AspS9I GGNCC 3 cut(s) 96, 683, 860
AsuHPI GGTGA 3 cut(s) 374, 591, 701
AvaI CYCGRG 1 cut(s) 651
AvaII GGWCC 1 cut(s) 96
BaeGI GKGCMC 1 cut(s) 661
BamHI GGATCC 1 cut(s) 719
BanI GGYRCC 1 cut(s) 192
BbsI GAAGAC 4 cut(s) 138, 156, 207, 235
Bbv12I GWGCWC 1 cut(s) 661
BbvI GCAGC 1 cut(s) 545
BccI CCATC 2 cut(s) 353, 833
BceAI ACGGC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 687
BcoDI GTCTC 1 cut(s) 479
BfaI CTAG 2 cut(s) 474, 910
BfmI CTRYAG 1 cut(s) 897
BisI GCNGC 4 cut(s) 30, 81, 289, 534
BlsI GCNGC 4 cut(s) 31, 82, 290, 535
Bme1390I CCNGG 1 cut(s) 687
Bme18I GGWCC 1 cut(s) 96
BmeRI GACNNNNNGTC 1 cut(s) 184
BmeT110I CYCGRG 1 cut(s) 651
BmgT120I GGNCC 3 cut(s) 96, 683, 860
BmiI GGNNCC 2 cut(s) 194, 721
BmrFI CCNGG 1 cut(s) 687
BmsI GCATC 3 cut(s) 425, 459, 484
BpiI GAAGAC 4 cut(s) 138, 156, 207, 235
BpuEI CTTGAG 1 cut(s) 439
BsaJI CCNNGG 1 cut(s) 685
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 608, 742, 887
Bse1I ACTGG 2 cut(s) 595, 747
Bse3DI GCAATG 1 cut(s) 509
BseBI CCWGG 1 cut(s) 687
BseDI CCNNGG 1 cut(s) 685
BseLI CCNNNNNNNGG 4 cut(s) 122, 608, 742, 887
BseMI GCAATG 1 cut(s) 509
BseMII CTCAG 1 cut(s) 783
BseNI ACTGG 2 cut(s) 595, 747
BseRI GAGGAG 2 cut(s) 756, 809
BseSI GKGCMC 1 cut(s) 661
BseXI GCAGC 1 cut(s) 545
BseYI CCCAGC 1 cut(s) 671
Bsh1236I CGCG 2 cut(s) 32, 74
BshFI GGCC 4 cut(s) 20, 612, 684, 862
BshNI GGYRCC 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 661
BsiHKCI CYCGRG 1 cut(s) 651
BsiSI CCGG 3 cut(s) 17, 99, 120
BslI CCNNNNNNNGG 4 cut(s) 122, 608, 742, 887
BsmAI GTCTC 1 cut(s) 479
BsnI GGCC 4 cut(s) 20, 612, 684, 862
BsoBI CYCGRG 1 cut(s) 651
Bsp1286I GDGCHC 1 cut(s) 661
Bsp143I GATC 1 cut(s) 719
BspANI GGCC 4 cut(s) 20, 612, 684, 862
BspCNI CTCAG 1 cut(s) 784
BspFNI CGCG 2 cut(s) 32, 74
BspLI GGNNCC 2 cut(s) 194, 721
BspPI GGATC 2 cut(s) 714, 727
BspT107I GGYRCC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 509
BsrI ACTGG 2 cut(s) 595, 747
BssECI CCNNGG 1 cut(s) 685
BssMI GATC 1 cut(s) 719
Bst2UI CCWGG 1 cut(s) 687
Bst4CI ACNGT 4 cut(s) 25, 230, 637, 898
BstC8I GCNNGC 2 cut(s) 42, 558
BstDEI CTNAG 2 cut(s) 792, 886
BstFNI CGCG 2 cut(s) 32, 74
BstKTI GATC 1 cut(s) 722
BstMAI GTCTC 1 cut(s) 479
BstMBI GATC 1 cut(s) 719
BstMWI GCNNNNNNNGC 5 cut(s) 26, 46, 80, 199, 681
BstNI CCWGG 1 cut(s) 687
BstSCI CCNGG 1 cut(s) 685
BstSFI CTRYAG 1 cut(s) 897
BstSLI GKGCMC 1 cut(s) 661
BstUI CGCG 2 cut(s) 32, 74
BstV1I GCAGC 1 cut(s) 545
BstV2I GAAGAC 4 cut(s) 138, 156, 207, 235
BstX2I RGATCY 1 cut(s) 719
BstXI CCANNNNNNTGG 1 cut(s) 400
BstYI RGATCY 1 cut(s) 719
BsuRI GGCC 4 cut(s) 20, 612, 684, 862
Cac8I GCNNGC 2 cut(s) 42, 558
Cfr13I GGNCC 3 cut(s) 96, 683, 860
CpoI CGGWCCG 1 cut(s) 96
CseI GACGC 3 cut(s) 63, 304, 562
CspI CGGWCCG 1 cut(s) 96
DdeI CTNAG 2 cut(s) 792, 886
DpnI GATC 1 cut(s) 721
DpnII GATC 1 cut(s) 719
DriI GACNNNNNGTC 1 cut(s) 184
EaeI YGGCCR 1 cut(s) 18
Eam1105I GACNNNNNGTC 1 cut(s) 184
EciI GGCGGA 3 cut(s) 67, 117, 138
Eco47I GGWCC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 311
Eco88I CYCGRG 1 cut(s) 651
EcoRII CCWGG 1 cut(s) 685
FalI AAGNNNNNCTT 2 cut(s) 540, 572
FauI CCCGC 1 cut(s) 825
FauNDI CATATG 1 cut(s) 865
Fnu4HI GCNGC 4 cut(s) 30, 81, 289, 534
Fsp4HI GCNGC 4 cut(s) 30, 81, 289, 534
FspBI CTAG 2 cut(s) 474, 910
GluI GCNGC 4 cut(s) 30, 81, 289, 534
GsaI CCCAGC 1 cut(s) 675
HaeIII GGCC 4 cut(s) 20, 612, 684, 862
HapII CCGG 3 cut(s) 17, 99, 120
HgaI GACGC 3 cut(s) 63, 304, 562
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 7 cut(s) 128, 179, 234, 350, 712, 763, 872
HpaII CCGG 3 cut(s) 17, 99, 120
HphI GGTGA 3 cut(s) 374, 591, 701
Hpy166II GTNNAC 3 cut(s) 568, 659, 762
Hpy188I TCNGA 4 cut(s) 61, 178, 226, 484
Hpy188III TCNNGA 2 cut(s) 440, 904
Hpy8I GTNNAC 3 cut(s) 568, 659, 762
Hpy99I CGWCG 3 cut(s) 29, 214, 320
HpyAV CCTTC 2 cut(s) 602, 851
HpyCH4III ACNGT 4 cut(s) 25, 230, 637, 898
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 3 cut(s) 450, 497, 659
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 46, 80, 199, 681
HpyF3I CTNAG 2 cut(s) 792, 886
HpySE526I ACGT 1 cut(s) 240
Kzo9I GATC 1 cut(s) 719
Lsp1109I GCAGC 1 cut(s) 545
LweI GCATC 3 cut(s) 425, 459, 484
MaeI CTAG 2 cut(s) 474, 910
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 7 cut(s) 469, 550, 597, 631, 689, 846, 892
MalI GATC 1 cut(s) 721
MboI GATC 1 cut(s) 719
MflI RGATCY 1 cut(s) 719
MhlI GDGCHC 1 cut(s) 661
MluCI AATT 4 cut(s) 67, 366, 388, 539
MlyI GAGTC 3 cut(s) 173, 721, 757
MmeI TCCRAC 2 cut(s) 84, 204
MnlI CCTC 9 cut(s) 127, 647, 739, 745, 777, 787, 790, 819, 836
MseI TTAA 4 cut(s) 254, 332, 678, 807
MspA1I CMGCKG 1 cut(s) 291
MspI CCGG 3 cut(s) 17, 99, 120
MspR9I CCNGG 1 cut(s) 687
MvaI CCWGG 1 cut(s) 687
MvnI CGCG 2 cut(s) 32, 74
MwoI GCNNNNNNNGC 5 cut(s) 26, 46, 80, 199, 681
NdeI CATATG 1 cut(s) 865
NdeII GATC 1 cut(s) 719
NlaIV GGNNCC 2 cut(s) 194, 721
NmuCI GTSAC 4 cut(s) 550, 597, 689, 846
PaeR7I CTCGAG 1 cut(s) 651
PcsI WCGNNNNNNNCGW 2 cut(s) 149, 206
PfeI GAWTC 4 cut(s) 128, 234, 350, 872
PflMI CCANNNNNTGG 1 cut(s) 742
PkrI GCNGC 4 cut(s) 31, 82, 290, 535
PleI GAGTC 3 cut(s) 173, 720, 757
PpsI GAGTC 3 cut(s) 173, 720, 757
PshBI ATTAAT 1 cut(s) 678
Psp6I CCWGG 1 cut(s) 685
PspFI CCCAGC 1 cut(s) 671
PspGI CCWGG 1 cut(s) 685
PspN4I GGNNCC 2 cut(s) 194, 721
PspPI GGNCC 3 cut(s) 96, 683, 860
PspXI VCTCGAGB 1 cut(s) 651
PsuI RGATCY 1 cut(s) 719
Rsr2I CGGWCCG 1 cut(s) 96
RsrII CGGWCCG 1 cut(s) 96
SaqAI TTAA 4 cut(s) 254, 332, 678, 807
SatI GCNGC 4 cut(s) 30, 81, 289, 534
Sau3AI GATC 1 cut(s) 719
Sau96I GGNCC 3 cut(s) 96, 683, 860
SchI GAGTC 3 cut(s) 173, 721, 757
ScrFI CCNGG 1 cut(s) 687
SduI GDGCHC 1 cut(s) 661
SetI ASST 6 cut(s) 243, 327, 538, 658, 756, 911
SfaNI GCATC 3 cut(s) 425, 459, 484
SfcI CTRYAG 1 cut(s) 897
Sfr274I CTCGAG 1 cut(s) 651
SinI GGWCC 1 cut(s) 96
SlaI CTCGAG 1 cut(s) 651
SmlI CTYRAG 2 cut(s) 454, 651
SmoI CTYRAG 2 cut(s) 454, 651
Sse9I AATT 4 cut(s) 67, 366, 388, 539
SspMI CTAG 2 cut(s) 474, 910
StyD4I CCNGG 1 cut(s) 685
TaaI ACNGT 4 cut(s) 25, 230, 637, 898
TaiI ACGT 1 cut(s) 243
TaqI TCGA 2 cut(s) 652, 731
TasI AATT 4 cut(s) 67, 366, 388, 539
TauI GCSGC 3 cut(s) 32, 83, 291
TfiI GAWTC 4 cut(s) 128, 234, 350, 872
Tru1I TTAA 4 cut(s) 254, 332, 678, 807
Tru9I TTAA 4 cut(s) 254, 332, 678, 807
TseFI GTSAC 4 cut(s) 550, 597, 689, 846
TseI GCWGC 1 cut(s) 533
Tsp45I GTSAC 4 cut(s) 550, 597, 689, 846
TspDTI ATGAA 7 cut(s) 126, 138, 162, 367, 453, 561, 621
Van91I CCANNNNNTGG 1 cut(s) 742
VneI GTGCAC 1 cut(s) 657
VpaK11BI GGWCC 1 cut(s) 96
VspI ATTAAT 1 cut(s) 678
XapI RAATTY 2 cut(s) 366, 539
XhoI CTCGAG 1 cut(s) 651
XspI CTAG 2 cut(s) 474, 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.