Rh3BG041500

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000368
Physical Location & Seq
Reverse (-)
2669763 .. 2673475
3713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG041500.1

Sequence Viewer

Length: 981 bp
ATGCCATTGAGAAATCCGGCCACCGTCGCCGCCGTGTTGTTCTTGTTCCTCTTGTTGATTCCGAGCTTCGCGTCCGCCGCCACCGGCGGCCACGTCGGCGGAAGCTTGTTCAAAAAATCCAAATCTTCGTCTTCGTCGCGGTCTTCTTCTTCTTCTTCTTCTTCTTGGTCTTCGCACTCGTCGCGTCACTACTACGCGCCGCCGACTTATCACTCCACGCCGTCTCCTTCCTCCTCGTCGGAAGACGGTGGCGGTACGGCGTTAATCGGTTTCGTGATTGTGTTGGGGGTTATCGTTTGTGTGTTAGCATTCTGCGAGTATTGTACGGCGGCGGAGAAGAGAAACGGTAACTGTGCCGGGGTTGGGAAACTAAGCGTGGTGAAGCTTCAGGTTGGTTTGATGGGCAAGGCGCGGTCACTCCAAAGGGATCTTAATCGAATTACTGAAACTGCAAATACTTCTACTCCAAAGGGTTTGAGCTATGTTTTGACAGGGGCAACCACAGCTTTGCTTCGGAATCTTGATCATTGCATCTCAAGCTATTCATCTCTTATACGAAAGTCCGAGATAGAGGATGCAGAGGAATGCTTCAAACTATTTTCTTTGGAAGAGGCGGCTAAATTTGATGAAGTGACCCTTGCCAATGTGAACAACTTCAAAAAGCGCTCAAAAAGCCAGTCACCTAATGAAATCCACAAAGAATATATAGTGGTTACAATTCTGGTGGCTACTGATGGAGAACAGAAGTTGCCCACCATCAGTGGCACTCGTGACTTGAAGAAAGCATTACATAAACTTGGAGCCATTTCCTCGAGCAAAATAATGGCTGTAGAGGTCTTGTGGACTCCTCAACAAGAAAACGATACTTTGACTGAGAGGGAACTACTCAAAGGTTACCCAGATTTGAGGGGTTTTTATGAAGAAGCATATCAAGGGCCATATGAAGATCAGCAGCCGTTCCTAGGGGCAAATGGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

326

Amino Acids

35.19

Weight (kDa)

8.42

Isoelectric Point (pI)

56.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 124 - 303 9.8e-60 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 71, 139, 184, 197, 412
AclWI GGATC 1 cut(s) 435
AcoI YGGCCR 2 cut(s) 18, 88
AcsI RAATTY 1 cut(s) 620
AcuI CTGAAG 1 cut(s) 371
AfaI GTAC 2 cut(s) 256, 325
AfeI AGCGCT 1 cut(s) 665
AfiI CCNNNNNNNGG 2 cut(s) 363, 962
AgsI TTSAA 4 cut(s) 112, 592, 658, 778
AjiI CACGTC 1 cut(s) 94
AluBI AGCT 6 cut(s) 66, 105, 385, 480, 506, 540
AluI AGCT 6 cut(s) 66, 105, 385, 480, 506, 540
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 1 cut(s) 435
Ama87I CYCGRG 1 cut(s) 811
Aor51HI AGCGCT 1 cut(s) 665
AoxI GGCC 3 cut(s) 18, 88, 935
ApeKI GCWGC 1 cut(s) 952
ApoI RAATTY 1 cut(s) 620
ArsI GACNNNNNNTTYG 2 cut(s) 662, 694
Asp700I GAANNNNTTC 1 cut(s) 653
AspA2I CCTAGG 1 cut(s) 961
AspLEI GCGC 3 cut(s) 199, 412, 666
AspS9I GGNCC 1 cut(s) 935
AsuC2I CCSGG 1 cut(s) 358
AsuHPI GGTGA 2 cut(s) 391, 672
AvaI CYCGRG 1 cut(s) 811
AvrII CCTAGG 1 cut(s) 961
BauI CACGAG 1 cut(s) 768
BbsI GAAGAC 4 cut(s) 123, 135, 162, 249
BbvI GCAGC 1 cut(s) 964
BccI CCATC 3 cut(s) 394, 728, 764
BceAI ACGGC 5 cut(s) 17, 205, 273, 342, 940
BclI TGATCA 1 cut(s) 523
BcnI CCSGG 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 228
BfaI CTAG 1 cut(s) 962
BfmI CTRYAG 1 cut(s) 828
BfoI RGCGCY 1 cut(s) 667
BglI GCCNNNNNGGC 1 cut(s) 96
BisI GCNGC 7 cut(s) 30, 78, 88, 200, 330, 615, 953
BlnI CCTAGG 1 cut(s) 961
BlsI GCNGC 7 cut(s) 31, 79, 89, 201, 331, 616, 954
Bme1390I CCNGG 1 cut(s) 358
BmeT110I CYCGRG 1 cut(s) 811
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 935
BmiI GGNNCC 1 cut(s) 802
BmrFI CCNGG 1 cut(s) 358
BmsI GCATC 2 cut(s) 540, 565
BpiI GAAGAC 4 cut(s) 123, 135, 162, 249
BpuEI CTTGAG 1 cut(s) 520
BpuMI CCSGG 1 cut(s) 358
BsaBI GATNNNNATC 1 cut(s) 432
BsaJI CCNNGG 2 cut(s) 357, 961
BsaXI ACNNNNNCTCC 4 cut(s) 208, 238, 448, 478
Bsc4I CCNNNNNNNGG 2 cut(s) 363, 962
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 676
Bse3DI GCAATG 1 cut(s) 526
Bse8I GATNNNNATC 1 cut(s) 432
BseDI CCNNGG 2 cut(s) 357, 961
BseGI GGATG 1 cut(s) 580
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 2 cut(s) 363, 962
BseMI GCAATG 1 cut(s) 526
BseMII CTCAG 1 cut(s) 864
BseNI ACTGG 1 cut(s) 676
BseRI GAGGAG 2 cut(s) 223, 837
BseXI GCAGC 1 cut(s) 964
Bsh1236I CGCG 5 cut(s) 71, 139, 184, 197, 412
BshFI GGCC 3 cut(s) 20, 90, 937
BsiHKCI CYCGRG 1 cut(s) 811
BsiSI CCGG 3 cut(s) 17, 84, 357
BslI CCNNNNNNNGG 2 cut(s) 363, 962
BsmAI GTCTC 1 cut(s) 228
BsmBI CGTCTC 1 cut(s) 228
BsmI GAATGC 2 cut(s) 308, 590
BsnI GGCC 3 cut(s) 20, 90, 937
BsoBI CYCGRG 1 cut(s) 811
Bsp143I GATC 3 cut(s) 427, 523, 946
BspANI GGCC 3 cut(s) 20, 90, 937
BspCNI CTCAG 1 cut(s) 865
BspFNI CGCG 5 cut(s) 71, 139, 184, 197, 412
BspLI GGNNCC 1 cut(s) 802
BspPI GGATC 1 cut(s) 435
BsrDI GCAATG 1 cut(s) 526
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 1 cut(s) 676
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 2 cut(s) 357, 961
BssMI GATC 3 cut(s) 427, 523, 946
BssSI CACGAG 1 cut(s) 768
BssT1I CCWWGG 1 cut(s) 961
Bst2BI CACGAG 1 cut(s) 768
Bst4CI ACNGT 4 cut(s) 25, 248, 347, 353
Bst6I CTCTTC 2 cut(s) 332, 603
BstDEI CTNAG 2 cut(s) 371, 873
BstEII GGTNACC 1 cut(s) 893
BstF5I GGATG 1 cut(s) 580
BstFNI CGCG 5 cut(s) 71, 139, 184, 197, 412
BstH2I RGCGCY 1 cut(s) 667
BstHHI GCGC 3 cut(s) 199, 412, 666
BstKTI GATC 3 cut(s) 430, 526, 949
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 3 cut(s) 427, 523, 946
BstMWI GCNNNNNNNGC 7 cut(s) 26, 77, 96, 181, 503, 537, 672
BstPI GGTNACC 1 cut(s) 893
BstSCI CCNGG 1 cut(s) 356
BstSFI CTRYAG 1 cut(s) 828
BstUI CGCG 5 cut(s) 71, 139, 184, 197, 412
BstV1I GCAGC 1 cut(s) 964
BstV2I GAAGAC 4 cut(s) 123, 135, 162, 249
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
BsuRI GGCC 3 cut(s) 20, 90, 937
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 1 cut(s) 580
BtsIMutI CAGTG 1 cut(s) 766
CfoI GCGC 3 cut(s) 199, 412, 666
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 935
CseI GACGC 2 cut(s) 60, 173
Csp6I GTAC 2 cut(s) 255, 324
CspCI CAANNNNNGTGG 2 cut(s) 705, 740
CviQI GTAC 2 cut(s) 255, 324
DdeI CTNAG 2 cut(s) 371, 873
DpnI GATC 3 cut(s) 429, 525, 948
DpnII GATC 3 cut(s) 427, 523, 946
EaeI YGGCCR 2 cut(s) 18, 88
Eam1104I CTCTTC 2 cut(s) 332, 603
EarI CTCTTC 2 cut(s) 332, 603
EciI GGCGGA 3 cut(s) 64, 114, 347
Eco130I CCWWGG 1 cut(s) 961
Eco47III AGCGCT 1 cut(s) 665
Eco57I CTGAAG 1 cut(s) 371
Eco88I CYCGRG 1 cut(s) 811
Eco91I GGTNACC 1 cut(s) 893
EcoO65I GGTNACC 1 cut(s) 893
EcoT14I CCWWGG 1 cut(s) 961
ErhI CCWWGG 1 cut(s) 961
Esp3I CGTCTC 1 cut(s) 228
FaiI YATR 9 cut(s) 483, 554, 705, 707, 792, 918, 928, 940, 942
FalI AAGNNNNNCTT 2 cut(s) 621, 653
FauNDI CATATG 1 cut(s) 940
FbaI TGATCA 1 cut(s) 523
Fnu4HI GCNGC 7 cut(s) 30, 78, 88, 200, 330, 615, 953
FokI GGATG 1 cut(s) 587
Fsp4HI GCNGC 7 cut(s) 30, 78, 88, 200, 330, 615, 953
FspBI CTAG 1 cut(s) 962
GlaI GCGC 3 cut(s) 198, 411, 665
GluI GCNGC 7 cut(s) 30, 78, 88, 200, 330, 615, 953
HaeII RGCGCY 1 cut(s) 667
HaeIII GGCC 3 cut(s) 20, 90, 937
HapII CCGG 3 cut(s) 17, 84, 357
HgaI GACGC 2 cut(s) 60, 173
HhaI GCGC 3 cut(s) 199, 412, 666
Hin6I GCGC 3 cut(s) 197, 410, 664
HinP1I GCGC 3 cut(s) 197, 410, 664
HindIII AAGCTT 2 cut(s) 103, 383
HinfI GANTC 3 cut(s) 58, 517, 844
HpaII CCGG 3 cut(s) 17, 84, 357
HphI GGTGA 2 cut(s) 391, 672
Hpy166II GTNNAC 2 cut(s) 649, 843
Hpy188I TCNGA 4 cut(s) 63, 241, 516, 565
Hpy188III TCNNGA 3 cut(s) 274, 521, 770
Hpy8I GTNNAC 2 cut(s) 649, 843
Hpy99I CGWCG 5 cut(s) 29, 98, 139, 184, 241
HpyAV CCTTC 1 cut(s) 237
HpyCH4III ACNGT 4 cut(s) 25, 248, 347, 353
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 3 cut(s) 452, 531, 578
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 77, 96, 181, 503, 537, 672
HpyF3I CTNAG 2 cut(s) 371, 873
HpySE526I ACGT 1 cut(s) 93
HspAI GCGC 3 cut(s) 197, 410, 664
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 3 cut(s) 427, 523, 946
LmnI GCTCC 1 cut(s) 800
LpnPI CCDG 8 cut(s) 30, 97, 370, 374, 477, 689, 707, 912
Lsp1109I GCAGC 1 cut(s) 964
LweI GCATC 2 cut(s) 540, 565
MaeI CTAG 1 cut(s) 962
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 8 cut(s) 185, 347, 414, 631, 678, 712, 770, 893
MalI GATC 3 cut(s) 429, 525, 948
MboI GATC 3 cut(s) 427, 523, 946
MflI RGATCY 1 cut(s) 427
MluCI AATT 3 cut(s) 438, 620, 717
MlyI GAGTC 1 cut(s) 838
MmeI TCCRAC 1 cut(s) 219
MroXI GAANNNNTTC 1 cut(s) 653
MseI TTAA 2 cut(s) 263, 432
MspI CCGG 3 cut(s) 17, 84, 357
MspR9I CCNGG 1 cut(s) 358
Mva1269I GAATGC 2 cut(s) 308, 590
MvnI CGCG 5 cut(s) 71, 139, 184, 197, 412
MwoI GCNNNNNNNGC 7 cut(s) 26, 77, 96, 181, 503, 537, 672
NciI CCSGG 1 cut(s) 358
NdeI CATATG 1 cut(s) 940
NdeII GATC 3 cut(s) 427, 523, 946
NlaIV GGNNCC 1 cut(s) 802
NmuCI GTSAC 5 cut(s) 185, 414, 631, 678, 770
PaeR7I CTCGAG 1 cut(s) 811
PctI GAATGC 2 cut(s) 308, 590
PdmI GAANNNNTTC 1 cut(s) 653
PfeI GAWTC 2 cut(s) 58, 517
PkrI GCNGC 7 cut(s) 31, 79, 89, 201, 331, 616, 954
PleI GAGTC 1 cut(s) 838
PpsI GAGTC 1 cut(s) 838
PspEI GGTNACC 1 cut(s) 893
PspN4I GGNNCC 1 cut(s) 802
PspPI GGNCC 1 cut(s) 935
PspXI VCTCGAGB 1 cut(s) 811
PsuI RGATCY 1 cut(s) 427
RsaI GTAC 2 cut(s) 256, 325
RsaNI GTAC 2 cut(s) 255, 324
SaqAI TTAA 2 cut(s) 263, 432
SatI GCNGC 7 cut(s) 30, 78, 88, 200, 330, 615, 953
Sau3AI GATC 3 cut(s) 427, 523, 946
Sau96I GGNCC 1 cut(s) 935
SchI GAGTC 1 cut(s) 838
ScrFI CCNGG 1 cut(s) 358
SfaNI GCATC 2 cut(s) 540, 565
SfcI CTRYAG 1 cut(s) 828
Sfr274I CTCGAG 1 cut(s) 811
SgrAI CRCCGGYG 1 cut(s) 83
SlaI CTCGAG 1 cut(s) 811
SmlI CTYRAG 2 cut(s) 535, 811
SmoI CTYRAG 2 cut(s) 535, 811
Sse9I AATT 3 cut(s) 438, 620, 717
SspMI CTAG 1 cut(s) 962
StyD4I CCNGG 1 cut(s) 356
StyI CCWWGG 1 cut(s) 961
TaaI ACNGT 4 cut(s) 25, 248, 347, 353
TaiI ACGT 1 cut(s) 96
TaqI TCGA 2 cut(s) 436, 812
TasI AATT 3 cut(s) 438, 620, 717
TauI GCSGC 6 cut(s) 32, 80, 90, 202, 332, 617
TfiI GAWTC 2 cut(s) 58, 517
Tru1I TTAA 2 cut(s) 263, 432
Tru9I TTAA 2 cut(s) 263, 432
TscAI CASTG 1 cut(s) 766
TseFI GTSAC 5 cut(s) 185, 414, 631, 678, 770
TseI GCWGC 1 cut(s) 952
Tsp45I GTSAC 5 cut(s) 185, 414, 631, 678, 770
TspDTI ATGAA 5 cut(s) 534, 642, 702, 933, 957
TspRI CASTG 1 cut(s) 766
XapI RAATTY 1 cut(s) 620
XhoI CTCGAG 1 cut(s) 811
XmaJI CCTAGG 1 cut(s) 961
XmnI GAANNNNTTC 1 cut(s) 653
XspI CTAG 1 cut(s) 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.