Rh3DG040400

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000368
Physical Location & Seq
Reverse (-)
2650852 .. 2653157
2306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG040400.1

Sequence Viewer

Length: 1020 bp
ATGGCAACCGCCGCCTTGCTCGGAGCTAATGCATTGACATGGAAGCATACCTTCCCAATTCTCTTGTTCCGCCGTCTTCCTCCTCTGCCCACCAGACCAATTAACTTTAACAATCAAGAACTAGGGTTATCTTCTTCCTCTTCTAAACTTGACTTTAACCAACTCAAACTTAAGTGCTTCTTCTCCGACTCAAAATCTGGCCACTTCACTCAATCGCCTCTTATCAAAGATTACCCAAGACGCCCAGTAGAGGTTATCTCCAATAAAATATTGTCAAATGCTCTCAAGGTACTGCGGATGCTTGCTATGGCTGCAGTGCTGTTAGGGTTGCTATTGATGTGTGGCCCCAATTCGGCTTTGGCAGCCTCCGGAGGGCGGTGCGGTGGAAGCCGATCTAGGTCATCCTCCTCGAGGTCCAGGTCGTCCTCCTCGAGGTCTAGGTCGTCCTCGTCAAGCTACAGGTGGCGGTCGTCATCAGGGTCAAAGTCAACGTCTTCCAATTTGGATTCGTCTGAGGCTTCAGCGGAGGATGAGGCTAAATTCTTCTGTTGTTTTTTAATCCTTCTGGTTCTGATTTTCTTAGTACCTGTTATCTTGTGTAGCCTTAGTTCAAGGTCTACCTTGATCTCAAGTGTTCTGAAGATTCAGGTGACTCCAAGTCAAAACATAGCAGATGCAGAGAAATGCTTCAATAGAATTTCAGTTGAAGAGAGGGCCAAATTTGATGAAGAAACTCTTGTTAATGTGAACAACAAAAAGAAGAAAAGCCCAACGAGCAAGAAAGACAACAAATTCCAAAATGAATATATAGTGGTTACACTATTGGTCGCTACTGAAGGCGAGTATATGTTGCCCACCATGAATGGCAGTGCTGAGTTAAAGGCAGCATTGCAAAGCCTCAAATGCATTACCTCAAAGAATATAATAGCAACTGAAGTGTTATGGACGCCACAGCAAGAAAATGACGTGCTATTGGAGCAGGAACTACTTGAAGATTACCCACTTCTGAAGCGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

339

Amino Acids

37.41

Weight (kDa)

9.49

Isoelectric Point (pI)

67.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 215 - 338 5.2e-41 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 2 cut(s) 409, 430
AccI GTMKAC 1 cut(s) 617
AccIII TCCGGA 1 cut(s) 368
AciI CCGC 8 cut(s) 9, 12, 70, 295, 376, 381, 466, 524
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 4 cut(s) 539, 696, 719, 791
AcuI CTGAAG 4 cut(s) 504, 659, 855, 954
AcyI GRCGYC 2 cut(s) 241, 947
AfaI GTAC 2 cut(s) 291, 585
AfeI AGCGCT 1 cut(s) 1013
AfiI CCNNNNNNNGG 6 cut(s) 250, 352, 372, 375, 411, 432
AflII CTTAAG 1 cut(s) 170
AgsI TTSAA 4 cut(s) 612, 691, 707, 992
AhdI GACNNNNNGTC 1 cut(s) 657
AjiI CACGTC 1 cut(s) 967
AjnI CCWGG 1 cut(s) 416
AluBI AGCT 2 cut(s) 26, 456
AluI AGCT 2 cut(s) 26, 456
Ama87I CYCGRG 2 cut(s) 409, 430
Aor13HI TCCGGA 1 cut(s) 368
Aor51HI AGCGCT 1 cut(s) 1013
AoxI GGCC 3 cut(s) 199, 343, 714
ApeKI GCWGC 3 cut(s) 311, 362, 884
ApoI RAATTY 4 cut(s) 539, 696, 719, 791
ArsI GACNNNNNNTTYG 2 cut(s) 476, 508
Asp700I GAANNNNTTC 1 cut(s) 686
AspLEI GCGC 1 cut(s) 1014
AspS9I GGNCC 3 cut(s) 344, 414, 714
AsuHPI GGTGA 1 cut(s) 661
AvaI CYCGRG 2 cut(s) 409, 430
AvaII GGWCC 1 cut(s) 414
BalI TGGCCA 1 cut(s) 201
BbsI GAAGAC 2 cut(s) 68, 486
BbvI GCAGC 3 cut(s) 298, 374, 896
BceAI ACGGC 1 cut(s) 57
BciT130I CCWGG 1 cut(s) 418
BfaI CTAG 3 cut(s) 122, 396, 438
BfmI CTRYAG 2 cut(s) 312, 457
BfoI RGCGCY 1 cut(s) 1015
BfrI CTTAAG 1 cut(s) 170
BisI GCNGC 4 cut(s) 12, 312, 363, 885
BlsI GCNGC 4 cut(s) 13, 313, 364, 886
Bme1390I CCNGG 1 cut(s) 418
Bme18I GGWCC 1 cut(s) 414
BmeRI GACNNNNNGTC 1 cut(s) 657
BmeT110I CYCGRG 2 cut(s) 409, 430
BmgBI CACGTC 1 cut(s) 967
BmgT120I GGNCC 3 cut(s) 344, 414, 714
BmiI GGNNCC 1 cut(s) 346
BmrFI CCNGG 1 cut(s) 418
BmrI ACTGGG 1 cut(s) 239
BmsI GCATC 2 cut(s) 288, 664
BmuI ACTGGG 1 cut(s) 239
BpiI GAAGAC 2 cut(s) 68, 486
BplI GAGNNNNNCTC 2 cut(s) 242, 274
BpuEI CTTGAG 2 cut(s) 269, 613
BsaHI GRCGYC 2 cut(s) 241, 947
BsaWI WCCGGW 1 cut(s) 368
Bsc4I CCNNNNNNNGG 6 cut(s) 250, 352, 372, 375, 411, 432
Bse1I ACTGG 1 cut(s) 245
Bse3DI GCAATG 1 cut(s) 887
BseAI TCCGGA 1 cut(s) 368
BseBI CCWGG 1 cut(s) 418
BseGI GGATG 3 cut(s) 303, 401, 535
BseLI CCNNNNNNNGG 6 cut(s) 250, 352, 372, 375, 411, 432
BseMI GCAATG 1 cut(s) 887
BseMII CTCAG 2 cut(s) 504, 864
BseNI ACTGG 1 cut(s) 245
BseRI GAGGAG 3 cut(s) 72, 397, 418
BseXI GCAGC 3 cut(s) 298, 374, 896
Bsh1285I CGRYCG 1 cut(s) 470
BshFI GGCC 3 cut(s) 201, 345, 716
BsiEI CGRYCG 1 cut(s) 470
BsiHKCI CYCGRG 2 cut(s) 409, 430
BsiSI CCGG 1 cut(s) 369
BslI CCNNNNNNNGG 6 cut(s) 250, 352, 372, 375, 411, 432
BsnI GGCC 3 cut(s) 201, 345, 716
BsoBI CYCGRG 2 cut(s) 409, 430
Bsp13I TCCGGA 1 cut(s) 368
Bsp143I GATC 2 cut(s) 392, 624
BspACI CCGC 8 cut(s) 9, 12, 70, 295, 376, 381, 466, 524
BspANI GGCC 3 cut(s) 201, 345, 716
BspCNI CTCAG 2 cut(s) 505, 865
BspEI TCCGGA 1 cut(s) 368
BspLI GGNNCC 1 cut(s) 346
BspMAI CTGCAG 1 cut(s) 316
BspTI CTTAAG 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 887
BsrI ACTGG 1 cut(s) 245
BssMI GATC 2 cut(s) 392, 624
BssNI GRCGYC 2 cut(s) 241, 947
Bst2UI CCWGG 1 cut(s) 418
Bst6I CTCTTC 2 cut(s) 145, 702
BstACI GRCGYC 2 cut(s) 241, 947
BstAFI CTTAAG 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 4 cut(s) 513, 580, 605, 873
BstENI CCTNNNNNAGG 2 cut(s) 409, 430
BstF5I GGATG 3 cut(s) 303, 401, 535
BstH2I RGCGCY 1 cut(s) 1015
BstHHI GCGC 1 cut(s) 1014
BstKTI GATC 2 cut(s) 395, 627
BstMBI GATC 2 cut(s) 392, 624
BstMCI CGRYCG 1 cut(s) 470
BstMWI GCNNNNNNNGC 7 cut(s) 11, 311, 362, 387, 774, 903, 976
BstNI CCWGG 1 cut(s) 418
BstSCI CCNGG 1 cut(s) 416
BstSFI CTRYAG 2 cut(s) 312, 457
BstV1I GCAGC 3 cut(s) 298, 374, 896
BstV2I GAAGAC 2 cut(s) 68, 486
BsuRI GGCC 3 cut(s) 201, 345, 716
BtrI CACGTC 1 cut(s) 967
BtsCI GGATG 3 cut(s) 303, 401, 535
BtsI GCAGTG 2 cut(s) 321, 874
BtsIMutI CAGTG 2 cut(s) 321, 874
Cac8I GCNNGC 1 cut(s) 303
CfoI GCGC 1 cut(s) 1014
Cfr13I GGNCC 3 cut(s) 344, 414, 714
CseI GACGC 2 cut(s) 249, 955
Csp6I GTAC 2 cut(s) 290, 584
CviAII CATG 2 cut(s) 39, 859
CviQI GTAC 2 cut(s) 290, 584
DdeI CTNAG 4 cut(s) 513, 580, 605, 873
DpnI GATC 2 cut(s) 394, 626
DpnII GATC 2 cut(s) 392, 624
DriI GACNNNNNGTC 1 cut(s) 657
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 2 cut(s) 145, 702
Eam1105I GACNNNNNGTC 1 cut(s) 657
EarI CTCTTC 2 cut(s) 145, 702
EciI GGCGGA 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 414
Eco47III AGCGCT 1 cut(s) 1013
Eco57I CTGAAG 4 cut(s) 504, 659, 855, 954
Eco88I CYCGRG 2 cut(s) 409, 430
EcoNI CCTNNNNNAGG 2 cut(s) 409, 430
EcoRII CCWGG 1 cut(s) 416
EcoT22I ATGCAT 2 cut(s) 34, 908
FaeI CATG 2 cut(s) 42, 862
FalI AAGNNNNNCTT 6 cut(s) 35, 67, 164, 196, 720, 752
FatI CATG 2 cut(s) 38, 858
FblI GTMKAC 1 cut(s) 617
Fnu4HI GCNGC 4 cut(s) 12, 312, 363, 885
FokI GGATG 3 cut(s) 310, 388, 542
Fsp4HI GCNGC 4 cut(s) 12, 312, 363, 885
FspBI CTAG 3 cut(s) 122, 396, 438
GlaI GCGC 1 cut(s) 1013
GluI GCNGC 4 cut(s) 12, 312, 363, 885
HaeII RGCGCY 1 cut(s) 1015
HaeIII GGCC 3 cut(s) 201, 345, 716
HapII CCGG 1 cut(s) 369
HgaI GACGC 2 cut(s) 249, 955
HhaI GCGC 1 cut(s) 1014
Hin1I GRCGYC 2 cut(s) 241, 947
Hin1II CATG 2 cut(s) 42, 862
Hin6I GCGC 1 cut(s) 1012
HinP1I GCGC 1 cut(s) 1012
HincII GTYRAC 1 cut(s) 489
HindII GTYRAC 1 cut(s) 489
HinfI GANTC 4 cut(s) 188, 506, 643, 652
HpaII CCGG 1 cut(s) 369
HphI GGTGA 1 cut(s) 661
Hpy166II GTNNAC 3 cut(s) 489, 618, 748
Hpy188I TCNGA 6 cut(s) 23, 187, 514, 573, 639, 1008
Hpy188III TCNNGA 2 cut(s) 116, 369
Hpy8I GTNNAC 3 cut(s) 489, 618, 748
HpyAV CCTTC 3 cut(s) 61, 572, 830
HpyCH4IV ACGT 2 cut(s) 491, 966
HpyCH4V TGCA 5 cut(s) 32, 314, 677, 892, 906
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 311, 362, 387, 774, 903, 976
HpyF3I CTNAG 4 cut(s) 513, 580, 605, 873
HpySE526I ACGT 2 cut(s) 491, 966
Hsp92I GRCGYC 2 cut(s) 241, 947
Hsp92II CATG 2 cut(s) 42, 862
HspAI GCGC 1 cut(s) 1012
Kpn2I TCCGGA 1 cut(s) 368
Kzo9I GATC 2 cut(s) 392, 624
LmnI GCTCC 2 cut(s) 23, 976
Lsp1109I GCAGC 3 cut(s) 298, 374, 896
LweI GCATC 2 cut(s) 288, 664
MaeI CTAG 3 cut(s) 122, 396, 438
MaeII ACGT 2 cut(s) 491, 966
MaeIII GTNAC 2 cut(s) 649, 814
MalI GATC 2 cut(s) 394, 626
MboI GATC 2 cut(s) 392, 624
MlsI TGGCCA 1 cut(s) 201
MluCI AATT 8 cut(s) 57, 99, 349, 499, 539, 696, 719, 791
MluNI TGGCCA 1 cut(s) 201
MlyI GAGTC 2 cut(s) 182, 646
MmeI TCCRAC 1 cut(s) 210
Mox20I TGGCCA 1 cut(s) 201
Mph1103I ATGCAT 2 cut(s) 34, 908
MroI TCCGGA 1 cut(s) 368
MroXI GAANNNNTTC 1 cut(s) 686
MscI TGGCCA 1 cut(s) 201
MseI TTAA 8 cut(s) 102, 108, 156, 171, 557, 741, 878, 1018
MslI CAYNNNNRTG 1 cut(s) 37
Msp20I TGGCCA 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 524
MspCI CTTAAG 1 cut(s) 170
MspI CCGG 1 cut(s) 369
MspR9I CCNGG 1 cut(s) 418
MvaI CCWGG 1 cut(s) 418
MwoI GCNNNNNNNGC 7 cut(s) 11, 311, 362, 387, 774, 903, 976
NdeII GATC 2 cut(s) 392, 624
NlaIII CATG 2 cut(s) 42, 862
NlaIV GGNNCC 1 cut(s) 346
NmuCI GTSAC 1 cut(s) 649
NsiI ATGCAT 2 cut(s) 34, 908
PaeR7I CTCGAG 2 cut(s) 409, 430
PcsI WCGNNNNNNNCGW 1 cut(s) 428
PdmI GAANNNNTTC 1 cut(s) 686
PfeI GAWTC 2 cut(s) 506, 643
PkrI GCNGC 4 cut(s) 13, 313, 364, 886
PleI GAGTC 2 cut(s) 182, 646
PpsI GAGTC 2 cut(s) 182, 646
Psp6I CCWGG 1 cut(s) 416
PspGI CCWGG 1 cut(s) 416
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 3 cut(s) 344, 414, 714
PspXI VCTCGAGB 2 cut(s) 409, 430
PsrI GAACNNNNNNTAC 2 cut(s) 592, 624
PstI CTGCAG 1 cut(s) 316
RsaI GTAC 2 cut(s) 291, 585
RsaNI GTAC 2 cut(s) 290, 584
RseI CAYNNNNRTG 1 cut(s) 37
SaqAI TTAA 8 cut(s) 102, 108, 156, 171, 557, 741, 878, 1018
SatI GCNGC 4 cut(s) 12, 312, 363, 885
Sau3AI GATC 2 cut(s) 392, 624
Sau96I GGNCC 3 cut(s) 344, 414, 714
SchI GAGTC 2 cut(s) 182, 646
ScrFI CCNGG 1 cut(s) 418
SfaNI GCATC 2 cut(s) 288, 664
SfcI CTRYAG 2 cut(s) 312, 457
Sfr274I CTCGAG 2 cut(s) 409, 430
SinI GGWCC 1 cut(s) 414
SlaI CTCGAG 2 cut(s) 409, 430
SmiMI CAYNNNNRTG 1 cut(s) 37
SmlI CTYRAG 5 cut(s) 170, 284, 409, 430, 628
SmoI CTYRAG 5 cut(s) 170, 284, 409, 430, 628
Sse9I AATT 8 cut(s) 57, 99, 349, 499, 539, 696, 719, 791
SsiI CCGC 8 cut(s) 9, 12, 70, 295, 376, 381, 466, 524
SspI AATATT 1 cut(s) 270
SspMI CTAG 3 cut(s) 122, 396, 438
StyD4I CCNGG 1 cut(s) 416
TaiI ACGT 2 cut(s) 494, 969
TaqI TCGA 2 cut(s) 410, 431
TasI AATT 8 cut(s) 57, 99, 349, 499, 539, 696, 719, 791
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 2 cut(s) 506, 643
Tru1I TTAA 8 cut(s) 102, 108, 156, 171, 557, 741, 878, 1018
Tru9I TTAA 8 cut(s) 102, 108, 156, 171, 557, 741, 878, 1018
TscAI CASTG 2 cut(s) 321, 874
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 3 cut(s) 311, 362, 884
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 3 cut(s) 741, 816, 875
TspRI CASTG 2 cut(s) 321, 874
Vha464I CTTAAG 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 414
XagI CCTNNNNNAGG 2 cut(s) 409, 430
XapI RAATTY 4 cut(s) 539, 696, 719, 791
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XhoI CTCGAG 2 cut(s) 409, 430
XmiI GTMKAC 1 cut(s) 617
XmnI GAANNNNTTC 1 cut(s) 686
XspI CTAG 3 cut(s) 122, 396, 438
Zsp2I ATGCAT 2 cut(s) 34, 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.