Rh3CG039800

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000368
Physical Location & Seq
Reverse (-)
2670581 .. 2673499
2919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG039800.1

Sequence Viewer

Length: 756 bp
ATGCCATTGAGAAATCCGGCCACCGTCGCCGCCGTGTTGTTCTTGTTCCTCTTGTTGATTCCGAGCTTCGCGTCCGCCGCCACCGGCGGCCACGTCGGCGGAAGCTTGTTCAAAAAATCCAAATCTTCGTCTTCGTCGCGGTCTTCTTCTTCTTCTTCTTCTTCTTGGTCTTCGCACTCGTCGCGTCACTACTACGCGCCGCCGACTTATCACTCCACGCCGTCTCCTTCCTCCTCGTCGGAAGACGGTGGCGGTACGGCGTTAATCGGTTTCGTGATTGTGTTGGGGGTTATCGTTTGTGTGTTAGCATTCTGCGAGTATTGTACGGCGGCGGAGAAGAGAAACGGTAACTGTGCCGGGGTTGGGAAACTAAGCGTGGTGAAGCTTCAGGTTGGTTTGATGGGCAAGGCGCGGTCACTCCAAAGGGATCTTAATCGAATTACTGAAACTGCAAATACTTCTACTCCAAAGGGTTTGAGCTATGTTTTGACAGGGGCAACCACAGCTTTGCTTCGGAATCTTGATCATTGCATCTCAAGCTATTCATCTCTTATACGAAAGTCCGAGATAGAGGATGCAGAGGAATGCTTCAAACTATTTTCTTTGGAAGAGGCGGCTAAATTTGATGAAGTGACCCTTGCCAATGTGAACAACTTCAAAAAGCGCTCAAAAAGCCAGTCACCTAATGAAATCCACAAAGAATATATAGTGGTAAGATCCAGATCAATCTGCATCATTTCTAATGTTTTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

251

Amino Acids

26.88

Weight (kDa)

9.27

Isoelectric Point (pI)

66.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 124 - 238 4.3e-28 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 71, 139, 184, 197, 412
AclWI GGATC 2 cut(s) 435, 711
AcoI YGGCCR 2 cut(s) 18, 88
AcsI RAATTY 1 cut(s) 620
AcuI CTGAAG 1 cut(s) 371
AfaI GTAC 2 cut(s) 256, 325
AfeI AGCGCT 1 cut(s) 665
AfiI CCNNNNNNNGG 1 cut(s) 363
AgsI TTSAA 3 cut(s) 112, 592, 658
AjiI CACGTC 1 cut(s) 94
AluBI AGCT 6 cut(s) 66, 105, 385, 480, 506, 540
AluI AGCT 6 cut(s) 66, 105, 385, 480, 506, 540
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 2 cut(s) 435, 711
Aor51HI AGCGCT 1 cut(s) 665
AoxI GGCC 2 cut(s) 18, 88
ApoI RAATTY 1 cut(s) 620
ArsI GACNNNNNNTTYG 2 cut(s) 662, 694
Asp700I GAANNNNTTC 1 cut(s) 653
AspLEI GCGC 3 cut(s) 199, 412, 666
AsuC2I CCSGG 1 cut(s) 358
AsuHPI GGTGA 2 cut(s) 391, 672
BbsI GAAGAC 4 cut(s) 123, 135, 162, 249
BccI CCATC 1 cut(s) 394
BceAI ACGGC 4 cut(s) 17, 205, 273, 342
BclI TGATCA 1 cut(s) 523
BcnI CCSGG 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 228
BfoI RGCGCY 1 cut(s) 667
BglI GCCNNNNNGGC 1 cut(s) 96
BisI GCNGC 6 cut(s) 30, 78, 88, 200, 330, 615
BlsI GCNGC 6 cut(s) 31, 79, 89, 201, 331, 616
Bme1390I CCNGG 1 cut(s) 358
BmgBI CACGTC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 358
BmsI GCATC 3 cut(s) 540, 565, 741
BpiI GAAGAC 4 cut(s) 123, 135, 162, 249
BpuEI CTTGAG 1 cut(s) 520
BpuMI CCSGG 1 cut(s) 358
BsaBI GATNNNNATC 2 cut(s) 432, 721
BsaJI CCNNGG 1 cut(s) 357
BsaXI ACNNNNNCTCC 4 cut(s) 208, 238, 448, 478
Bsc4I CCNNNNNNNGG 1 cut(s) 363
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 676
Bse3DI GCAATG 1 cut(s) 526
Bse8I GATNNNNATC 2 cut(s) 432, 721
BseDI CCNNGG 1 cut(s) 357
BseGI GGATG 1 cut(s) 580
BseJI GATNNNNATC 2 cut(s) 432, 721
BseLI CCNNNNNNNGG 1 cut(s) 363
BseMI GCAATG 1 cut(s) 526
BseNI ACTGG 1 cut(s) 676
BseRI GAGGAG 1 cut(s) 223
Bsh1236I CGCG 5 cut(s) 71, 139, 184, 197, 412
BshFI GGCC 2 cut(s) 20, 90
BsiSI CCGG 3 cut(s) 17, 84, 357
BslI CCNNNNNNNGG 1 cut(s) 363
BsmAI GTCTC 1 cut(s) 228
BsmBI CGTCTC 1 cut(s) 228
BsmI GAATGC 2 cut(s) 308, 590
BsnI GGCC 2 cut(s) 20, 90
Bsp143I GATC 4 cut(s) 427, 523, 716, 722
BspANI GGCC 2 cut(s) 20, 90
BspFNI CGCG 5 cut(s) 71, 139, 184, 197, 412
BspPI GGATC 2 cut(s) 435, 711
BsrDI GCAATG 1 cut(s) 526
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 1 cut(s) 676
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 357
BssMI GATC 4 cut(s) 427, 523, 716, 722
Bst4CI ACNGT 4 cut(s) 25, 248, 347, 353
Bst6I CTCTTC 2 cut(s) 332, 603
BstDEI CTNAG 1 cut(s) 371
BstF5I GGATG 1 cut(s) 580
BstFNI CGCG 5 cut(s) 71, 139, 184, 197, 412
BstH2I RGCGCY 1 cut(s) 667
BstHHI GCGC 3 cut(s) 199, 412, 666
BstKTI GATC 4 cut(s) 430, 526, 719, 725
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 4 cut(s) 427, 523, 716, 722
BstMWI GCNNNNNNNGC 7 cut(s) 26, 77, 96, 181, 503, 537, 672
BstSCI CCNGG 1 cut(s) 356
BstUI CGCG 5 cut(s) 71, 139, 184, 197, 412
BstV2I GAAGAC 4 cut(s) 123, 135, 162, 249
BstX2I RGATCY 2 cut(s) 427, 716
BstYI RGATCY 2 cut(s) 427, 716
BsuRI GGCC 2 cut(s) 20, 90
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 1 cut(s) 580
CfoI GCGC 3 cut(s) 199, 412, 666
Cfr10I RCCGGY 1 cut(s) 83
CseI GACGC 2 cut(s) 60, 173
Csp6I GTAC 2 cut(s) 255, 324
CviQI GTAC 2 cut(s) 255, 324
DdeI CTNAG 1 cut(s) 371
DpnI GATC 4 cut(s) 429, 525, 718, 724
DpnII GATC 4 cut(s) 427, 523, 716, 722
EaeI YGGCCR 2 cut(s) 18, 88
Eam1104I CTCTTC 2 cut(s) 332, 603
EarI CTCTTC 2 cut(s) 332, 603
EciI GGCGGA 3 cut(s) 64, 114, 347
Eco47III AGCGCT 1 cut(s) 665
Eco57I CTGAAG 1 cut(s) 371
Esp3I CGTCTC 1 cut(s) 228
FaiI YATR 4 cut(s) 483, 554, 705, 707
FalI AAGNNNNNCTT 2 cut(s) 621, 653
FbaI TGATCA 1 cut(s) 523
Fnu4HI GCNGC 6 cut(s) 30, 78, 88, 200, 330, 615
FokI GGATG 1 cut(s) 587
Fsp4HI GCNGC 6 cut(s) 30, 78, 88, 200, 330, 615
GlaI GCGC 3 cut(s) 198, 411, 665
GluI GCNGC 6 cut(s) 30, 78, 88, 200, 330, 615
HaeII RGCGCY 1 cut(s) 667
HaeIII GGCC 2 cut(s) 20, 90
HapII CCGG 3 cut(s) 17, 84, 357
HgaI GACGC 2 cut(s) 60, 173
HhaI GCGC 3 cut(s) 199, 412, 666
Hin6I GCGC 3 cut(s) 197, 410, 664
HinP1I GCGC 3 cut(s) 197, 410, 664
HindIII AAGCTT 2 cut(s) 103, 383
HinfI GANTC 2 cut(s) 58, 517
HpaII CCGG 3 cut(s) 17, 84, 357
HphI GGTGA 2 cut(s) 391, 672
Hpy166II GTNNAC 1 cut(s) 649
Hpy188I TCNGA 4 cut(s) 63, 241, 516, 565
Hpy188III TCNNGA 3 cut(s) 274, 521, 720
Hpy8I GTNNAC 1 cut(s) 649
Hpy99I CGWCG 5 cut(s) 29, 98, 139, 184, 241
HpyAV CCTTC 1 cut(s) 237
HpyCH4III ACNGT 4 cut(s) 25, 248, 347, 353
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 4 cut(s) 452, 531, 578, 732
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 77, 96, 181, 503, 537, 672
HpyF3I CTNAG 1 cut(s) 371
HpySE526I ACGT 1 cut(s) 93
HspAI GCGC 3 cut(s) 197, 410, 664
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 4 cut(s) 427, 523, 716, 722
LpnPI CCDG 7 cut(s) 30, 97, 370, 374, 477, 689, 733
LweI GCATC 3 cut(s) 540, 565, 741
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 5 cut(s) 185, 347, 414, 631, 678
MalI GATC 4 cut(s) 429, 525, 718, 724
MboI GATC 4 cut(s) 427, 523, 716, 722
MflI RGATCY 2 cut(s) 427, 716
MluCI AATT 2 cut(s) 438, 620
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 6 cut(s) 59, 241, 244, 565, 574, 604
MroXI GAANNNNTTC 1 cut(s) 653
MseI TTAA 2 cut(s) 263, 432
MspI CCGG 3 cut(s) 17, 84, 357
MspR9I CCNGG 1 cut(s) 358
Mva1269I GAATGC 2 cut(s) 308, 590
MvnI CGCG 5 cut(s) 71, 139, 184, 197, 412
MwoI GCNNNNNNNGC 7 cut(s) 26, 77, 96, 181, 503, 537, 672
NciI CCSGG 1 cut(s) 358
NdeII GATC 4 cut(s) 427, 523, 716, 722
NmuCI GTSAC 4 cut(s) 185, 414, 631, 678
PctI GAATGC 2 cut(s) 308, 590
PdmI GAANNNNTTC 1 cut(s) 653
PfeI GAWTC 2 cut(s) 58, 517
PkrI GCNGC 6 cut(s) 31, 79, 89, 201, 331, 616
PsuI RGATCY 2 cut(s) 427, 716
RsaI GTAC 2 cut(s) 256, 325
RsaNI GTAC 2 cut(s) 255, 324
SaqAI TTAA 2 cut(s) 263, 432
SatI GCNGC 6 cut(s) 30, 78, 88, 200, 330, 615
Sau3AI GATC 4 cut(s) 427, 523, 716, 722
ScrFI CCNGG 1 cut(s) 358
SetI ASST 9 cut(s) 68, 96, 107, 387, 393, 482, 508, 542, 685
SfaNI GCATC 3 cut(s) 540, 565, 741
SgrAI CRCCGGYG 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 535
SmoI CTYRAG 1 cut(s) 535
Sse9I AATT 2 cut(s) 438, 620
StyD4I CCNGG 1 cut(s) 356
TaaI ACNGT 4 cut(s) 25, 248, 347, 353
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 436
TasI AATT 2 cut(s) 438, 620
TauI GCSGC 6 cut(s) 32, 80, 90, 202, 332, 617
TfiI GAWTC 2 cut(s) 58, 517
Tru1I TTAA 2 cut(s) 263, 432
Tru9I TTAA 2 cut(s) 263, 432
TseFI GTSAC 4 cut(s) 185, 414, 631, 678
Tsp45I GTSAC 4 cut(s) 185, 414, 631, 678
TspDTI ATGAA 3 cut(s) 534, 642, 702
XapI RAATTY 1 cut(s) 620
XmnI GAANNNNTTC 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.