FvH4_6g03490

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000368
Physical Location & Seq
Reverse (-)
1917920 .. 1919819
1900 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03490.t1

Sequence Viewer

Length: 1128 bp
ATGGCTATATCTGCGTTGCTCGTAGCCAACCCCTTGACCTCATTGAAGCAAACCTCCCCTATCCCCTTCTCTCGTCTTCATTCTCTCCTTACCAAACCACTCCAATTCACAACAGCCTCCTTCAAAACTCAACACCTATCTTCTTCTTCTTCCTCATCTTCCTCCCCCAAATATGATCTCAAACTCAAATGCTCCTCGGAGAAGAACCAGTTCACATCAGACCATGCCTCTCATTCAGAAGCCAACCCAACTCGAGACCCACTTGAGACCATCGCCAATGAAATATTCTCGAATGTTCTCAAGGGCCTGAGAGCACCTGCCGCAGAAAACCCTAACCCACTTGAGGCTATATTCAATGAAACATTATCGAATGCTCTCAAGGTACTCAAGACACCTGCCATGGCTGCGGTGCTGTTAACTTTGTTGTTGACGTTTCACCCGAACAAGTCATGGGCCGCCTCCGGTGGTTGCGTCGGGGGAAGCTCCTTCTCCTCAGGCTCTTTTCTTCGTCGTCATCTTATACGTCTAATGATTATTTTTCTTCATCATCACCTTCAGCCAAGTGCTGATGCAACCTCAAACGTTGTTAAGCTTCAGGTTGGCTTGTTGGGTACTGCACGAGCACTCCAAAGAGATCTTGATCGTATCGCCGAAACTGCTGATACGTCTAACCGCAAGGGCTTGAGCTATGTATTGACAGAGGCAACTGTAGCTTTGCTCAGACATCCAGATTATTGGATCTCAAGTTATTCATCTGTTACTCCAAATCATAACATGGAGGATGCAGAGAAATGCTTCAATAAAATTTCGATTGAAGAGAGGGCGAAGTTTGATGAGGAGACGCTTGTCAATCTGAACAACAAAAGGAGGAAAAGCTCGACAAGCAAGAATTACGATGGATTTCGAAACCAATATATAGTGGTGACATTGTTGGTTGCAATCGAAGGGAAGCATAAGGTGGCCGCCATCAATAGCAGCGATGACTTGAAGAAAGCATTGGAAAATCTCGGATCCATTCCTTCGAAGAATATAGCAGCAGTACAAGTGTTATGGACTCCACAGCAGAAAAATGACACATTGTCAGAGGAAGAACTTATGGAAGATTACCCACTTCTGAAGCGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

376

Amino Acids

41.37

Weight (kDa)

9.06

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 194 - 374 8.9e-69 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 325, 403
Acc36I ACCTGC 2 cut(s) 325, 403
AciI CCGC 5 cut(s) 321, 407, 456, 673, 963
AclI AACGTT 1 cut(s) 582
AclWI GGATC 3 cut(s) 746, 1005, 1018
AcoI YGGCCR 1 cut(s) 960
AcsI RAATTY 1 cut(s) 804
AcuI CTGAAG 2 cut(s) 539, 578
AfaI GTAC 3 cut(s) 384, 613, 1041
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 6 cut(s) 46, 124, 355, 799, 815, 988
AhdI GACNNNNNGTC 1 cut(s) 1078
AjuI GAANNNNNNNTTGG 4 cut(s) 269, 301, 980, 1012
AluBI AGCT 5 cut(s) 483, 592, 687, 713, 876
AluI AGCT 5 cut(s) 483, 592, 687, 713, 876
Alw21I GWGCWC 2 cut(s) 316, 625
Alw26I GTCTC 3 cut(s) 249, 260, 833
AlwI GGATC 3 cut(s) 746, 1005, 1018
Ama87I CYCGRG 1 cut(s) 252
AoxI GGCC 3 cut(s) 304, 453, 960
ApeKI GCWGC 3 cut(s) 404, 975, 1034
ApoI RAATTY 1 cut(s) 804
Asp700I GAANNNNTTC 2 cut(s) 209, 794
AspS9I GGNCC 2 cut(s) 304, 453
AsuHPI GGTGA 3 cut(s) 428, 542, 934
AsuII TTCGAA 2 cut(s) 904, 1022
AvaI CYCGRG 1 cut(s) 252
AxyI CCTNAGG 1 cut(s) 493
BamHI GGATCC 1 cut(s) 1010
BauI CACGAG 1 cut(s) 618
BbsI GAAGAC 1 cut(s) 68
Bbv12I GWGCWC 2 cut(s) 316, 625
BbvI GCAGC 3 cut(s) 391, 987, 1046
BccI CCATC 3 cut(s) 278, 890, 974
BcoDI GTCTC 3 cut(s) 249, 260, 833
BfmI CTRYAG 1 cut(s) 708
BfuAI ACCTGC 2 cut(s) 325, 403
BglII AGATCT 1 cut(s) 634
BisI GCNGC 6 cut(s) 321, 405, 456, 963, 976, 1035
BlsI GCNGC 6 cut(s) 322, 406, 457, 964, 977, 1036
BmeRI GACNNNNNGTC 1 cut(s) 1078
BmeT110I CYCGRG 1 cut(s) 252
BmgT120I GGNCC 2 cut(s) 304, 453
BmiI GGNNCC 1 cut(s) 1012
BmsI GCATC 2 cut(s) 559, 772
BoxI GACNNNNGTC 1 cut(s) 845
BpiI GAAGAC 1 cut(s) 68
Bpu14I TTCGAA 2 cut(s) 904, 1022
BpuEI CTTGAG 7 cut(s) 284, 284, 362, 362, 371, 703, 727
BsaBI GATNNNNATC 1 cut(s) 639
BsaI GGTCTC 2 cut(s) 249, 260
BsaJI CCNNGG 2 cut(s) 195, 399
BsaWI WCCGGW 1 cut(s) 461
BsaXI ACNNNNNCTCC 2 cut(s) 609, 639
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse1I ACTGG 1 cut(s) 208
Bse21I CCTNAGG 1 cut(s) 493
Bse8I GATNNNNATC 1 cut(s) 639
BseDI CCNNGG 2 cut(s) 195, 399
BseGI GGATG 2 cut(s) 724, 787
BseJI GATNNNNATC 1 cut(s) 639
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMII CTCAG 3 cut(s) 299, 507, 733
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 3 cut(s) 184, 481, 851
BseXI GCAGC 3 cut(s) 391, 987, 1046
BsgI GTGCAG 1 cut(s) 600
BshFI GGCC 3 cut(s) 306, 455, 962
BsiHKAI GWGCWC 2 cut(s) 316, 625
BsiHKCI CYCGRG 1 cut(s) 252
BsiSI CCGG 1 cut(s) 462
BslI CCNNNNNNNGG 1 cut(s) 343
BsmAI GTCTC 3 cut(s) 249, 260, 833
BsmBI CGTCTC 1 cut(s) 833
BsmI GAATGC 1 cut(s) 376
BsnI GGCC 3 cut(s) 306, 455, 962
Bso31I GGTCTC 2 cut(s) 249, 260
BsoBI CYCGRG 1 cut(s) 252
Bsp119I TTCGAA 2 cut(s) 904, 1022
Bsp1286I GDGCHC 2 cut(s) 316, 625
Bsp143I GATC 5 cut(s) 175, 634, 640, 738, 1010
Bsp19I CCATGG 1 cut(s) 399
BspACI CCGC 5 cut(s) 321, 407, 456, 673, 963
BspANI GGCC 3 cut(s) 306, 455, 962
BspCNI CTCAG 3 cut(s) 300, 506, 732
BspLI GGNNCC 1 cut(s) 1012
BspMI ACCTGC 2 cut(s) 325, 403
BspPI GGATC 3 cut(s) 746, 1005, 1018
BspT104I TTCGAA 2 cut(s) 904, 1022
BspTNI GGTCTC 2 cut(s) 249, 260
BsrI ACTGG 1 cut(s) 208
BssECI CCNNGG 2 cut(s) 195, 399
BssMI GATC 5 cut(s) 175, 634, 640, 738, 1010
BssSI CACGAG 1 cut(s) 618
BssT1I CCWWGG 1 cut(s) 399
Bst2BI CACGAG 1 cut(s) 618
Bst4CI ACNGT 1 cut(s) 709
Bst6I CTCTTC 1 cut(s) 810
BstBI TTCGAA 2 cut(s) 904, 1022
BstDEI CTNAG 3 cut(s) 308, 493, 719
BstDSI CCRYGG 1 cut(s) 399
BstF5I GGATG 2 cut(s) 724, 787
BstKTI GATC 5 cut(s) 178, 637, 643, 741, 1013
BstMAI GTCTC 3 cut(s) 249, 260, 833
BstMBI GATC 5 cut(s) 175, 634, 640, 738, 1010
BstMWI GCNNNNNNNGC 6 cut(s) 11, 320, 404, 656, 710, 882
BstPAI GACNNNNGTC 1 cut(s) 845
BstSFI CTRYAG 1 cut(s) 708
BstV1I GCAGC 3 cut(s) 391, 987, 1046
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 3 cut(s) 634, 738, 1010
BstXI CCANNNNNNTGG 1 cut(s) 735
BstYI RGATCY 3 cut(s) 634, 738, 1010
Bsu36I CCTNAGG 1 cut(s) 493
BsuRI GGCC 3 cut(s) 306, 455, 962
BtgI CCRYGG 1 cut(s) 399
BtgZI GCGATG 2 cut(s) 256, 993
BtsCI GGATG 2 cut(s) 724, 787
BveI ACCTGC 2 cut(s) 325, 403
Cfr13I GGNCC 2 cut(s) 304, 453
CseI GACGC 2 cut(s) 460, 850
Csp6I GTAC 3 cut(s) 383, 612, 1040
CviAII CATG 4 cut(s) 224, 400, 450, 775
CviQI GTAC 3 cut(s) 383, 612, 1040
DdeI CTNAG 3 cut(s) 308, 493, 719
DpnI GATC 5 cut(s) 177, 636, 642, 740, 1012
DpnII GATC 5 cut(s) 175, 634, 640, 738, 1010
DriI GACNNNNNGTC 1 cut(s) 1078
EaeI YGGCCR 1 cut(s) 960
Eam1104I CTCTTC 1 cut(s) 810
Eam1105I GACNNNNNGTC 1 cut(s) 1078
EarI CTCTTC 1 cut(s) 810
Eco130I CCWWGG 1 cut(s) 399
Eco31I GGTCTC 2 cut(s) 249, 260
Eco57I CTGAAG 2 cut(s) 539, 578
Eco81I CCTNAGG 1 cut(s) 493
Eco88I CYCGRG 1 cut(s) 252
EcoO109I RGGNCCY 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 399
Esp3I CGTCTC 1 cut(s) 833
FaeI CATG 4 cut(s) 227, 403, 453, 778
FatI CATG 4 cut(s) 223, 399, 449, 774
Fnu4HI GCNGC 6 cut(s) 321, 405, 456, 963, 976, 1035
FokI GGATG 2 cut(s) 711, 794
Fsp4HI GCNGC 6 cut(s) 321, 405, 456, 963, 976, 1035
GluI GCNGC 6 cut(s) 321, 405, 456, 963, 976, 1035
HaeIII GGCC 3 cut(s) 306, 455, 962
HapII CCGG 1 cut(s) 462
HgaI GACGC 2 cut(s) 460, 850
Hin1II CATG 4 cut(s) 227, 403, 453, 778
HincII GTYRAC 2 cut(s) 417, 429
HindII GTYRAC 2 cut(s) 417, 429
HindIII AAGCTT 1 cut(s) 590
HinfI GANTC 1 cut(s) 1054
HpaI GTTAAC 1 cut(s) 417
HpaII CCGG 1 cut(s) 462
HphI GGTGA 3 cut(s) 428, 542, 934
Hpy166II GTNNAC 3 cut(s) 213, 417, 429
Hpy188I TCNGA 8 cut(s) 199, 220, 238, 722, 855, 1010, 1084, 1116
Hpy188III TCNNGA 5 cut(s) 254, 289, 388, 638, 728
Hpy8I GTNNAC 3 cut(s) 213, 417, 429
Hpy99I CGWCG 2 cut(s) 476, 513
HpyAV CCTTC 6 cut(s) 76, 130, 496, 563, 938, 1029
HpyCH4III ACNGT 1 cut(s) 709
HpyCH4IV ACGT 4 cut(s) 431, 523, 582, 665
HpyCH4V TGCA 4 cut(s) 572, 617, 785, 938
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 320, 404, 656, 710, 882
HpyF3I CTNAG 3 cut(s) 308, 493, 719
HpySE526I ACGT 4 cut(s) 431, 523, 582, 665
Hsp92II CATG 4 cut(s) 227, 403, 453, 778
KspAI GTTAAC 1 cut(s) 417
Kzo9I GATC 5 cut(s) 175, 634, 640, 738, 1010
LmnI GCTCC 2 cut(s) 197, 488
LpnPI CCDG 8 cut(s) 221, 320, 330, 408, 475, 480, 581, 741
Lsp1109I GCAGC 3 cut(s) 391, 987, 1046
LweI GCATC 2 cut(s) 559, 772
MaeII ACGT 4 cut(s) 431, 523, 582, 665
MaeIII GTNAC 2 cut(s) 757, 922
MalI GATC 5 cut(s) 177, 636, 642, 740, 1012
MboI GATC 5 cut(s) 175, 634, 640, 738, 1010
MflI RGATCY 3 cut(s) 634, 738, 1010
MhlI GDGCHC 2 cut(s) 316, 625
MluCI AATT 3 cut(s) 104, 804, 889
MlyI GAGTC 1 cut(s) 1048
MroXI GAANNNNTTC 2 cut(s) 209, 794
MseI TTAA 2 cut(s) 416, 588
MspI CCGG 1 cut(s) 462
Mva1269I GAATGC 1 cut(s) 376
MwoI GCNNNNNNNGC 6 cut(s) 11, 320, 404, 656, 710, 882
NcoI CCATGG 1 cut(s) 399
NdeII GATC 5 cut(s) 175, 634, 640, 738, 1010
NlaIII CATG 4 cut(s) 227, 403, 453, 778
NlaIV GGNNCC 1 cut(s) 1012
NmuCI GTSAC 1 cut(s) 922
NspV TTCGAA 2 cut(s) 904, 1022
PaeR7I CTCGAG 1 cut(s) 252
PaqCI CACCTGC 2 cut(s) 325, 403
PcsI WCGNNNNNNNCGW 1 cut(s) 437
PctI GAATGC 1 cut(s) 376
PdmI GAANNNNTTC 2 cut(s) 209, 794
PkrI GCNGC 6 cut(s) 322, 406, 457, 964, 977, 1036
PleI GAGTC 1 cut(s) 1048
PpsI GAGTC 1 cut(s) 1048
PshAI GACNNNNGTC 1 cut(s) 845
Psp1406I AACGTT 1 cut(s) 582
PspN4I GGNNCC 1 cut(s) 1012
PspPI GGNCC 2 cut(s) 304, 453
PsuI RGATCY 3 cut(s) 634, 738, 1010
RsaI GTAC 3 cut(s) 384, 613, 1041
RsaNI GTAC 3 cut(s) 383, 612, 1040
SaqAI TTAA 2 cut(s) 416, 588
SatI GCNGC 6 cut(s) 321, 405, 456, 963, 976, 1035
Sau3AI GATC 5 cut(s) 175, 634, 640, 738, 1010
Sau96I GGNCC 2 cut(s) 304, 453
SchI GAGTC 1 cut(s) 1048
SduI GDGCHC 2 cut(s) 316, 625
SfaNI GCATC 2 cut(s) 559, 772
SfcI CTRYAG 1 cut(s) 708
Sfr274I CTCGAG 1 cut(s) 252
SfuI TTCGAA 2 cut(s) 904, 1022
SlaI CTCGAG 1 cut(s) 252
SmlI CTYRAG 8 cut(s) 252, 263, 299, 341, 377, 386, 682, 742
SmoI CTYRAG 8 cut(s) 252, 263, 299, 341, 377, 386, 682, 742
Sse9I AATT 3 cut(s) 104, 804, 889
SsiI CCGC 5 cut(s) 321, 407, 456, 673, 963
SspI AATATT 1 cut(s) 285
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 1 cut(s) 709
TaiI ACGT 4 cut(s) 434, 526, 585, 668
TaqI TCGA 8 cut(s) 253, 290, 368, 809, 878, 904, 942, 1022
TasI AATT 3 cut(s) 104, 804, 889
TatI WGTACW 1 cut(s) 1039
TauI GCSGC 3 cut(s) 323, 458, 965
Tru1I TTAA 2 cut(s) 416, 588
Tru9I TTAA 2 cut(s) 416, 588
TseFI GTSAC 1 cut(s) 922
TseI GCWGC 3 cut(s) 404, 975, 1034
Tsp45I GTSAC 1 cut(s) 922
TspDTI ATGAA 5 cut(s) 68, 294, 372, 533, 741
XapI RAATTY 1 cut(s) 804
XhoI CTCGAG 1 cut(s) 252
XmnI GAANNNNTTC 2 cut(s) 209, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.