RLG00000025631

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000368
Physical Location & Seq
Forward (+)
47203657 .. 47206543
2887 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025631

Sequence Viewer

Length: 1323 bp
ATGGCTACATCTGCGTTGCTCGGAGCCAACTCCTTGATCTCATTGAAGCAAACCTCCCCAATCCCCTTCTCCCGTCTTCGTTCTCTCCCCACCAAACCACTCCAGTTCACCTACTTCACCACAGCCACCTTGAAAACGCAACCCTTATCTTCTTCTTCTTCTTCTCCCAAATATGATCTGAAACTCAAATGCTCCTCGGAGAAGAATCACTTCACATCAGACGATGCCTCTCAGTCAGAAGTCAACCCAACTCAAGACCCACTTGAGACCATCGCCAATGAAATATTATCGAATGTTCTCAAGGGACTGAAAACACCTGCAGTAGAGAACCCACCATTTGATGCTATCTTCAATGAAACATTCTCGAACGCTCTCAAGGGACTCAAAACACCTGCAAAAGAGAATCCTAACCCACTTGAAGCTATCTTCAATGAAACATTAGCGAGTGCTCTCAAGGTACTCAAGAAACCTGCCATGGCTGCCGTGTTGTTGAGTTTGTTATTGACGTTTAACCCGAACTCGTCGTGGGCCGCCTCGGGTGGTCGGGTCGGGGGAAGCTCGTTCTCCTCACGCTCTTCGTCGTCATCCTCGTCAGGGTCGTCGTCTTATTCTTCTTCATCATCGTCGTATAGATCTTCAAGTTCTTCACCTTCGTATTCGTACACGTCGTATTCGTCATATTCAATGCCTTCATCATCGAGTTCTTCGTCTACTACCTCGATGTCCGAGGCCTTAATTTCACTGTGCATAATCATTCTGATTTTGGTTCTGTTGGCTGTCTGTGTGGGCGCGGGCGCGGGCGAGGGCTTGGCCGCATATTCAAGCGTTGCTGCGACCTTAAACGTTGTTAAGCTTCAGAATACTTGGGATATAGATTGGATGGGCAGTCAACCCCTCCCCCTTTTTACTTACTGTTTCTCCCCGCCCATTGAATTTGACTCCAATCCATGGGTTACTCCAAATTATAACATGAAGGATGCGGAGAAATGCTTCAATAAAATTTCTATTGAAGAGAGGGCTAAATTTGATGAAGAGACGCTTGTCAACGTGAACAACAAAAAAAGAAAAAGCTCGACAAGCAAGGCTGATGATGGATTCCAAAACGAATATATAGTGGTGACATTGTTAGTTGCGATTGAAGGGAGGCATAAGTTGCCCACCATCAATGGCAGCGCTGACTTGAAGGAAGCATTGAAAAGTCTCGGATCCATTCCTTCAAAGAATATACTGGCAGCAGAAGTGTTATGGACTCCACAGACAGAAAATGACAGACTGTCCGAGGAGGAACTGATAGAAGATTACCCACTTCTGAAGCGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

441

Amino Acids

47.43

Weight (kDa)

5.93

Isoelectric Point (pI)

57.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 323 - 440 1.1e-44 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 966
AarI CACCTGC 2 cut(s) 325, 400
Acc36I ACCTGC 3 cut(s) 325, 400, 478
AccB7I CCANNNNNTGG 1 cut(s) 948
AccI GTMKAC 1 cut(s) 710
AccII CGCG 2 cut(s) 791, 797
AciI CCGC 6 cut(s) 531, 791, 797, 813, 923, 980
AclI AACGTT 1 cut(s) 843
AclWI GGATC 2 cut(s) 1200, 1213
AcoI YGGCCR 1 cut(s) 810
AcsI RAATTY 3 cut(s) 932, 999, 1022
AcuI CTGAAG 1 cut(s) 839
AfaI GTAC 2 cut(s) 459, 662
AfeI AGCGCT 1 cut(s) 1174
AfiI CCNNNNNNNGG 2 cut(s) 594, 948
AflIII ACRYGT 1 cut(s) 663
AhdI GACNNNNNGTC 1 cut(s) 1273
AjiI CACGTC 1 cut(s) 666
AluBI AGCT 4 cut(s) 422, 558, 853, 1071
AluI AGCT 4 cut(s) 422, 558, 853, 1071
Alw21I GWGCWC 1 cut(s) 451
Alw26I GTCTC 3 cut(s) 260, 1028, 1205
AlwI GGATC 2 cut(s) 1200, 1213
Ama87I CYCGRG 1 cut(s) 535
Aor51HI AGCGCT 1 cut(s) 1174
AoxI GGCC 3 cut(s) 528, 729, 810
ApeKI GCWGC 4 cut(s) 479, 830, 1170, 1232
ApoI RAATTY 3 cut(s) 932, 999, 1022
Asp700I GAANNNNTTC 2 cut(s) 209, 989
AspLEI GCGC 3 cut(s) 791, 797, 1175
AspS9I GGNCC 1 cut(s) 528
AsuHPI GGTGA 4 cut(s) 100, 109, 639, 1129
AvaI CYCGRG 1 cut(s) 535
BamHI GGATCC 1 cut(s) 1205
BbsI GAAGAC 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 451
BbvI GCAGC 4 cut(s) 466, 817, 1182, 1244
BccI CCATC 4 cut(s) 278, 874, 1085, 1169
BceAI ACGGC 1 cut(s) 467
BcoDI GTCTC 3 cut(s) 260, 1028, 1205
BfmI CTRYAG 1 cut(s) 318
BfoI RGCGCY 1 cut(s) 1176
BfuAI ACCTGC 3 cut(s) 325, 400, 478
BglII AGATCT 1 cut(s) 632
BisI GCNGC 6 cut(s) 480, 531, 813, 831, 1171, 1233
BlsI GCNGC 6 cut(s) 481, 532, 814, 832, 1172, 1234
BmeRI GACNNNNNGTC 1 cut(s) 1273
BmeT110I CYCGRG 1 cut(s) 535
BmgBI CACGTC 1 cut(s) 666
BmgT120I GGNCC 1 cut(s) 528
BmiI GGNNCC 2 cut(s) 25, 1207
BmsI GCATC 3 cut(s) 214, 331, 967
BoxI GACNNNNGTC 1 cut(s) 1040
BpiI GAAGAC 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 86
BpuEI CTTGAG 6 cut(s) 237, 284, 284, 359, 437, 446
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 6 cut(s) 195, 474, 534, 726, 947, 1278
BsaXI ACNNNNNCTCC 2 cut(s) 902, 932
Bsc4I CCNNNNNNNGG 2 cut(s) 594, 948
Bse1I ACTGG 2 cut(s) 103, 1233
BseDI CCNNGG 6 cut(s) 195, 474, 534, 726, 947, 1278
BseGI GGATG 3 cut(s) 584, 885, 982
BseLI CCNNNNNNNGG 2 cut(s) 594, 948
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 2 cut(s) 103, 1233
BseRI GAGGAG 3 cut(s) 184, 556, 1295
BseXI GCAGC 4 cut(s) 466, 817, 1182, 1244
Bsh1236I CGCG 2 cut(s) 791, 797
BshFI GGCC 3 cut(s) 530, 731, 812
BsiHKAI GWGCWC 1 cut(s) 451
BsiHKCI CYCGRG 1 cut(s) 535
BslFI GGGAC 2 cut(s) 318, 393
BslI CCNNNNNNNGG 2 cut(s) 594, 948
BsmAI GTCTC 3 cut(s) 260, 1028, 1205
BsmBI CGTCTC 1 cut(s) 1028
BsmFI GGGAC 2 cut(s) 318, 393
BsnI GGCC 3 cut(s) 530, 731, 812
Bso31I GGTCTC 1 cut(s) 260
BsoBI CYCGRG 1 cut(s) 535
Bsp1286I GDGCHC 1 cut(s) 451
Bsp143I GATC 4 cut(s) 36, 175, 632, 1205
Bsp19I CCATGG 2 cut(s) 474, 947
BspACI CCGC 6 cut(s) 531, 791, 797, 813, 923, 980
BspANI GGCC 3 cut(s) 530, 731, 812
BspCNI CTCAG 1 cut(s) 244
BspFNI CGCG 2 cut(s) 791, 797
BspLI GGNNCC 2 cut(s) 25, 1207
BspMAI CTGCAG 1 cut(s) 322
BspMI ACCTGC 3 cut(s) 325, 400, 478
BspPI GGATC 2 cut(s) 1200, 1213
BspQI GCTCTTC 1 cut(s) 580
BspTNI GGTCTC 1 cut(s) 260
BsrI ACTGG 2 cut(s) 103, 1233
BssECI CCNNGG 6 cut(s) 195, 474, 534, 726, 947, 1278
BssMI GATC 4 cut(s) 36, 175, 632, 1205
BssT1I CCWWGG 2 cut(s) 474, 947
Bst4CI ACNGT 3 cut(s) 744, 914, 1275
Bst6I CTCTTC 3 cut(s) 580, 1005, 1026
BstAPI GCANNNNNTGC 1 cut(s) 1153
BstC8I GCNNGC 2 cut(s) 793, 799
BstDEI CTNAG 1 cut(s) 231
BstDSI CCRYGG 2 cut(s) 474, 947
BstF5I GGATG 3 cut(s) 584, 885, 982
BstFNI CGCG 2 cut(s) 791, 797
BstH2I RGCGCY 1 cut(s) 1176
BstHHI GCGC 3 cut(s) 791, 797, 1175
BstKTI GATC 4 cut(s) 39, 178, 635, 1208
BstMAI GTCTC 3 cut(s) 260, 1028, 1205
BstMBI GATC 4 cut(s) 36, 175, 632, 1205
BstMWI GCNNNNNNNGC 4 cut(s) 11, 479, 1077, 1153
BstPAI GACNNNNGTC 1 cut(s) 1040
BstSFI CTRYAG 1 cut(s) 318
BstUI CGCG 2 cut(s) 791, 797
BstV1I GCAGC 4 cut(s) 466, 817, 1182, 1244
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 2 cut(s) 632, 1205
BstYI RGATCY 2 cut(s) 632, 1205
BsuRI GGCC 3 cut(s) 530, 731, 812
BtgI CCRYGG 2 cut(s) 474, 947
BtgZI GCGATG 1 cut(s) 256
BtrI CACGTC 1 cut(s) 666
BtsCI GGATG 3 cut(s) 584, 885, 982
BtsIMutI CAGTG 1 cut(s) 740
BveI ACCTGC 3 cut(s) 325, 400, 478
Cac8I GCNNGC 2 cut(s) 793, 799
CfoI GCGC 3 cut(s) 791, 797, 1175
Cfr13I GGNCC 1 cut(s) 528
CseI GACGC 1 cut(s) 1045
Csp6I GTAC 2 cut(s) 458, 661
CviAII CATG 3 cut(s) 475, 948, 970
CviQI GTAC 2 cut(s) 458, 661
DdeI CTNAG 1 cut(s) 231
DpnI GATC 4 cut(s) 38, 177, 634, 1207
DpnII GATC 4 cut(s) 36, 175, 632, 1205
DriI GACNNNNNGTC 1 cut(s) 1273
EaeI YGGCCR 1 cut(s) 810
Eam1104I CTCTTC 3 cut(s) 580, 1005, 1026
Eam1105I GACNNNNNGTC 1 cut(s) 1273
EarI CTCTTC 3 cut(s) 580, 1005, 1026
Eco130I CCWWGG 2 cut(s) 474, 947
Eco147I AGGCCT 1 cut(s) 731
Eco31I GGTCTC 1 cut(s) 260
Eco47III AGCGCT 1 cut(s) 1174
Eco57I CTGAAG 1 cut(s) 839
Eco88I CYCGRG 1 cut(s) 535
EcoT14I CCWWGG 2 cut(s) 474, 947
ErhI CCWWGG 2 cut(s) 474, 947
Esp3I CGTCTC 1 cut(s) 1028
FaeI CATG 3 cut(s) 478, 951, 973
FalI AAGNNNNNCTT 6 cut(s) 194, 226, 246, 278, 1023, 1055
FaqI GGGAC 2 cut(s) 318, 393
FatI CATG 3 cut(s) 474, 947, 969
FauI CCCGC 3 cut(s) 784, 790, 930
FblI GTMKAC 1 cut(s) 710
Fnu4HI GCNGC 6 cut(s) 480, 531, 813, 831, 1171, 1233
FokI GGATG 3 cut(s) 571, 892, 989
Fsp4HI GCNGC 6 cut(s) 480, 531, 813, 831, 1171, 1233
GlaI GCGC 3 cut(s) 790, 796, 1174
GluI GCNGC 6 cut(s) 480, 531, 813, 831, 1171, 1233
GsuI CTGGAG 1 cut(s) 86
HaeII RGCGCY 1 cut(s) 1176
HaeIII GGCC 3 cut(s) 530, 731, 812
HgaI GACGC 1 cut(s) 1045
HhaI GCGC 3 cut(s) 791, 797, 1175
Hin1II CATG 3 cut(s) 478, 951, 973
Hin6I GCGC 3 cut(s) 789, 795, 1173
HinP1I GCGC 3 cut(s) 789, 795, 1173
HincII GTYRAC 3 cut(s) 244, 890, 1045
HindII GTYRAC 3 cut(s) 244, 890, 1045
HindIII AAGCTT 1 cut(s) 851
HinfI GANTC 6 cut(s) 205, 381, 403, 938, 1095, 1249
HphI GGTGA 4 cut(s) 100, 109, 639, 1129
Hpy166II GTNNAC 7 cut(s) 108, 244, 663, 711, 890, 1045, 1051
Hpy188III TCNNGA 3 cut(s) 254, 364, 463
Hpy8I GTNNAC 7 cut(s) 108, 244, 663, 711, 890, 1045, 1051
Hpy99I CGWCG 5 cut(s) 526, 583, 604, 628, 670
HpyAV CCTTC 7 cut(s) 76, 660, 699, 967, 1133, 1177, 1224
HpyCH4III ACNGT 3 cut(s) 744, 914, 1275
HpyCH4IV ACGT 4 cut(s) 506, 665, 843, 1047
HpyCH4V TGCA 3 cut(s) 320, 395, 747
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 479, 1077, 1153
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 4 cut(s) 506, 665, 843, 1047
Hsp92II CATG 3 cut(s) 478, 951, 973
HspAI GCGC 3 cut(s) 789, 795, 1173
Kzo9I GATC 4 cut(s) 36, 175, 632, 1205
LguI GCTCTTC 1 cut(s) 580
LmnI GCTCC 2 cut(s) 23, 197
LpnPI CCDG 6 cut(s) 116, 330, 405, 483, 579, 1214
Lsp1109I GCAGC 4 cut(s) 466, 817, 1182, 1244
LweI GCATC 3 cut(s) 214, 331, 967
MaeII ACGT 4 cut(s) 506, 665, 843, 1047
MaeIII GTNAC 2 cut(s) 952, 1117
MalI GATC 4 cut(s) 38, 177, 634, 1207
MboI GATC 4 cut(s) 36, 175, 632, 1205
MflI RGATCY 2 cut(s) 632, 1205
MhlI GDGCHC 1 cut(s) 451
MluCI AATT 5 cut(s) 735, 932, 961, 999, 1022
MlyI GAGTC 3 cut(s) 375, 932, 1243
MroXI GAANNNNTTC 2 cut(s) 209, 989
MseI TTAA 4 cut(s) 510, 734, 839, 849
MvnI CGCG 2 cut(s) 791, 797
MwoI GCNNNNNNNGC 4 cut(s) 11, 479, 1077, 1153
NcoI CCATGG 2 cut(s) 474, 947
NdeII GATC 4 cut(s) 36, 175, 632, 1205
NlaIII CATG 3 cut(s) 478, 951, 973
NlaIV GGNNCC 2 cut(s) 25, 1207
NmuCI GTSAC 1 cut(s) 1117
PaqCI CACCTGC 2 cut(s) 325, 400
PceI AGGCCT 1 cut(s) 731
PciSI GCTCTTC 1 cut(s) 580
PcsI WCGNNNNNNNCGW 6 cut(s) 512, 587, 596, 665, 671, 704
PdmI GAANNNNTTC 2 cut(s) 209, 989
PfeI GAWTC 3 cut(s) 205, 403, 1095
PflMI CCANNNNNTGG 1 cut(s) 948
PkrI GCNGC 6 cut(s) 481, 532, 814, 832, 1172, 1234
PleI GAGTC 3 cut(s) 375, 932, 1243
PpsI GAGTC 3 cut(s) 375, 932, 1243
PshAI GACNNNNGTC 1 cut(s) 1040
PsiI TTATAA 1 cut(s) 966
Psp1406I AACGTT 1 cut(s) 843
PspN4I GGNNCC 2 cut(s) 25, 1207
PspPI GGNCC 1 cut(s) 528
PstI CTGCAG 1 cut(s) 322
PsuI RGATCY 2 cut(s) 632, 1205
RsaI GTAC 2 cut(s) 459, 662
RsaNI GTAC 2 cut(s) 458, 661
SapI GCTCTTC 1 cut(s) 580
SaqAI TTAA 4 cut(s) 510, 734, 839, 849
SatI GCNGC 6 cut(s) 480, 531, 813, 831, 1171, 1233
Sau3AI GATC 4 cut(s) 36, 175, 632, 1205
Sau96I GGNCC 1 cut(s) 528
SchI GAGTC 3 cut(s) 375, 932, 1243
SduI GDGCHC 1 cut(s) 451
SfaNI GCATC 3 cut(s) 214, 331, 967
SfcI CTRYAG 1 cut(s) 318
SmlI CTYRAG 6 cut(s) 252, 263, 299, 374, 452, 461
SmoI CTYRAG 6 cut(s) 252, 263, 299, 374, 452, 461
Sse9I AATT 5 cut(s) 735, 932, 961, 999, 1022
SseBI AGGCCT 1 cut(s) 731
SsiI CCGC 6 cut(s) 531, 791, 797, 813, 923, 980
SspI AATATT 1 cut(s) 285
StuI AGGCCT 1 cut(s) 731
StyI CCWWGG 2 cut(s) 474, 947
TaaI ACNGT 3 cut(s) 744, 914, 1275
TaiI ACGT 4 cut(s) 509, 668, 846, 1050
TaqI TCGA 5 cut(s) 290, 365, 698, 719, 1073
TasI AATT 5 cut(s) 735, 932, 961, 999, 1022
TauI GCSGC 2 cut(s) 533, 815
TfiI GAWTC 3 cut(s) 205, 403, 1095
Tru1I TTAA 4 cut(s) 510, 734, 839, 849
Tru9I TTAA 4 cut(s) 510, 734, 839, 849
TscAI CASTG 1 cut(s) 747
TseFI GTSAC 1 cut(s) 1117
TseI GCWGC 4 cut(s) 479, 830, 1170, 1232
Tsp45I GTSAC 1 cut(s) 1117
TspDTI ATGAA 7 cut(s) 294, 369, 447, 606, 681, 986, 1044
TspRI CASTG 1 cut(s) 747
Van91I CCANNNNNTGG 1 cut(s) 948
XapI RAATTY 3 cut(s) 932, 999, 1022
XmiI GTMKAC 1 cut(s) 710
XmnI GAANNNNTTC 2 cut(s) 209, 989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.