Rorug02G0638400

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000368
Physical Location & Seq
Reverse (-)
75135683 .. 75136573
891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0638400.1

Sequence Viewer

Length: 891 bp
ATGGACGGCGGAGATGGATGGCACGCGGCAGCTGGCGGTGGAGGTGGAAAAGAAAAAACGGTTATTAACCGGATAATGCTCAGATACCGTCCAATCGCACCCAGACCGATCCTCGGAGCATCCTGTTCAGGTGAGATTGTCCCGGAGGGGAAGAACAAAAGCTTGTATTCTCCGAGTAAGAGAGTTAAGAGGAAGTACATTCGGACCAAGAAAGGTAGCAGATCTTCAACTGGAGATCCACAAGGCGGTGTCATGGACTCGACCACCATCACGCTTCAGCTGTTGCCCGGAGAAAGACGCTCCGGAGATACTTCAGGTAGTAGATCTTGGTTGAGTATTGACCAGGCGGTTGAGAAATACCCGCATAGTCAGGACCACCTATGGGTGAACACGCGAACTTTGAATAGCTGGCCGGAGATAACTGATGCGGTGGCTGGATCTGACCGGAGGTTGGTGGCAGCGGCTCCGGTGGTGGCTGTGGAGTCGTGGGTGACGGTGGAAAGCGTGACAGACACGTGCATGGATGTTCGAGGCTTAGGTTGTACGGACAGGGAGAAAGCGGGGAGTTTGGAGAAGGACACGTGTCCGGGGTTTATATCAGACGGTTTTAACAGAGTTCAGTGGGTGAACGAGGCTTATAAGGACATGGTGAGGCAAGGGGGGAATTACTACTGTGACGGGCAGTCACCGGAGGTGAGGGTTTGGCTGGTCACGAAGGCGGAGTTGCCGGCAAATGGGCACTCGGCGTTCAGTTGTAGGGTGAGGCTGCAGTACATGTGTCAGAAGGAGAAGTGTTCGAAAATGGTGCCCTGTGATGTGTGGAGGATGCAGGAGGGTGCTGGGTTGGCTTGGAGGCTGGACATGAAGGCTGCGCTCAGTTTGGGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

296

Amino Acids

32.48

Weight (kDa)

9.01

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 160 - 293 1.7e-57 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 639
AccB1I GGYRCC 1 cut(s) 805
AccII CGCG 2 cut(s) 26, 394
AccIII TCCGGA 1 cut(s) 302
AclWI GGATC 3 cut(s) 103, 230, 445
AcoI YGGCCR 1 cut(s) 410
AcuI CTGAAG 2 cut(s) 260, 297
AcvI CACGTG 2 cut(s) 516, 582
AfaI GTAC 3 cut(s) 197, 544, 773
AfiI CCNNNNNNNGG 5 cut(s) 113, 245, 382, 451, 734
AflIII ACRYGT 4 cut(s) 513, 579, 581, 774
AgsI TTSAA 2 cut(s) 228, 403
AhdI GACNNNNNGTC 1 cut(s) 682
AjnI CCWGG 1 cut(s) 342
AluBI AGCT 4 cut(s) 32, 162, 280, 408
AluI AGCT 4 cut(s) 32, 162, 280, 408
AlwI GGATC 3 cut(s) 103, 230, 445
Aor13HI TCCGGA 1 cut(s) 302
AoxI GGCC 1 cut(s) 410
ApeKI GCWGC 4 cut(s) 29, 458, 766, 869
AspLEI GCGC 1 cut(s) 874
AspS9I GGNCC 2 cut(s) 204, 373
AsuC2I CCSGG 3 cut(s) 143, 288, 588
AsuHPI GGTGA 8 cut(s) 143, 397, 502, 637, 661, 678, 706, 772
AsuII TTCGAA 1 cut(s) 797
AvaII GGWCC 2 cut(s) 204, 373
BaeGI GKGCMC 2 cut(s) 741, 810
BanI GGYRCC 1 cut(s) 805
BarI GAAGNNNNNNTAC 2 cut(s) 208, 240
BbrPI CACGTG 2 cut(s) 516, 582
BbvI GCAGC 4 cut(s) 41, 470, 753, 856
BccI CCATC 3 cut(s) 8, 12, 275
BceAI ACGGC 1 cut(s) 22
BcgI CGANNNNNNTGC 2 cut(s) 787, 821
BciT130I CCWGG 1 cut(s) 344
BcnI CCSGG 3 cut(s) 143, 288, 588
BfmI CTRYAG 1 cut(s) 767
BglII AGATCT 2 cut(s) 221, 323
BisI GCNGC 6 cut(s) 27, 30, 459, 462, 767, 870
BlsI GCNGC 6 cut(s) 28, 31, 460, 463, 768, 871
Bme1390I CCNGG 4 cut(s) 143, 288, 344, 588
Bme18I GGWCC 2 cut(s) 204, 373
BmeRI GACNNNNNGTC 1 cut(s) 682
BmgT120I GGNCC 2 cut(s) 204, 373
BmiI GGNNCC 2 cut(s) 465, 807
BmrFI CCNGG 4 cut(s) 143, 288, 344, 588
BmsI GCATC 3 cut(s) 128, 415, 816
BoxI GACNNNNGTC 1 cut(s) 582
BpmI CTGGAG 1 cut(s) 252
Bpu10I CCTNAGC 1 cut(s) 535
Bpu14I TTCGAA 1 cut(s) 797
BpuMI CCSGG 3 cut(s) 143, 288, 588
BsaAI YACGTR 2 cut(s) 516, 582
BsaJI CCNNGG 2 cut(s) 112, 587
BsaWI WCCGGW 5 cut(s) 69, 302, 444, 466, 688
Bsc4I CCNNNNNNNGG 5 cut(s) 113, 245, 382, 451, 734
Bse118I RCCGGY 1 cut(s) 727
Bse1I ACTGG 1 cut(s) 235
BseAI TCCGGA 1 cut(s) 302
BseBI CCWGG 1 cut(s) 344
BseDI CCNNGG 2 cut(s) 112, 587
BseGI GGATG 4 cut(s) 23, 119, 529, 831
BseLI CCNNNNNNNGG 5 cut(s) 113, 245, 382, 451, 734
BseMII CTCAG 2 cut(s) 94, 889
BseNI ACTGG 1 cut(s) 235
BseSI GKGCMC 2 cut(s) 741, 810
BseXI GCAGC 4 cut(s) 41, 470, 753, 856
BseYI CCCAGC 1 cut(s) 839
Bsh1236I CGCG 2 cut(s) 26, 394
BshFI GGCC 1 cut(s) 412
BshNI GGYRCC 1 cut(s) 805
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 5 cut(s) 113, 245, 382, 451, 734
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 1 cut(s) 412
Bsp119I TTCGAA 1 cut(s) 797
Bsp1286I GDGCHC 2 cut(s) 741, 810
Bsp13I TCCGGA 1 cut(s) 302
Bsp143I GATC 5 cut(s) 108, 221, 235, 323, 437
BspANI GGCC 1 cut(s) 412
BspCNI CTCAG 2 cut(s) 93, 888
BspEI TCCGGA 1 cut(s) 302
BspFNI CGCG 2 cut(s) 26, 394
BspLI GGNNCC 2 cut(s) 465, 807
BspMAI CTGCAG 1 cut(s) 771
BspPI GGATC 3 cut(s) 103, 230, 445
BspT104I TTCGAA 1 cut(s) 797
BspT107I GGYRCC 1 cut(s) 805
BsrFI RCCGGY 1 cut(s) 727
BsrI ACTGG 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 727
BssECI CCNNGG 2 cut(s) 112, 587
BssMI GATC 5 cut(s) 108, 221, 235, 323, 437
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 5 cut(s) 61, 89, 496, 605, 674
BstBAI YACGTR 2 cut(s) 516, 582
BstBI TTCGAA 1 cut(s) 797
BstC8I GCNNGC 4 cut(s) 24, 34, 410, 729
BstDEI CTNAG 3 cut(s) 80, 535, 875
BstF5I GGATG 4 cut(s) 23, 119, 529, 831
BstFNI CGCG 2 cut(s) 26, 394
BstHHI GCGC 1 cut(s) 874
BstKTI GATC 5 cut(s) 111, 224, 238, 326, 440
BstMBI GATC 5 cut(s) 108, 221, 235, 323, 437
BstMWI GCNNNNNNNGC 1 cut(s) 845
BstNI CCWGG 1 cut(s) 344
BstNSI RCATGY 1 cut(s) 778
BstPAI GACNNNNGTC 1 cut(s) 582
BstSCI CCNGG 4 cut(s) 141, 286, 342, 586
BstSFI CTRYAG 1 cut(s) 767
BstSLI GKGCMC 2 cut(s) 741, 810
BstUI CGCG 2 cut(s) 26, 394
BstV1I GCAGC 4 cut(s) 41, 470, 753, 856
BstX2I RGATCY 4 cut(s) 221, 235, 323, 437
BstYI RGATCY 4 cut(s) 221, 235, 323, 437
BsuRI GGCC 1 cut(s) 412
BtsCI GGATG 4 cut(s) 23, 119, 529, 831
BtsIMutI CAGTG 1 cut(s) 626
Cac8I GCNNGC 4 cut(s) 24, 34, 410, 729
CfoI GCGC 1 cut(s) 874
Cfr10I RCCGGY 1 cut(s) 727
Cfr13I GGNCC 2 cut(s) 204, 373
CseI GACGC 1 cut(s) 306
Csp6I GTAC 3 cut(s) 196, 543, 772
CviAII CATG 5 cut(s) 253, 520, 646, 775, 862
CviQI GTAC 3 cut(s) 196, 543, 772
DdeI CTNAG 3 cut(s) 80, 535, 875
DpnI GATC 5 cut(s) 110, 223, 237, 325, 439
DpnII GATC 5 cut(s) 108, 221, 235, 323, 437
DriI GACNNNNNGTC 1 cut(s) 682
EaeI YGGCCR 1 cut(s) 410
Eam1105I GACNNNNNGTC 1 cut(s) 682
EciI GGCGGA 2 cut(s) 24, 734
Eco47I GGWCC 2 cut(s) 204, 373
Eco57I CTGAAG 2 cut(s) 260, 297
Eco72I CACGTG 2 cut(s) 516, 582
EcoRII CCWGG 1 cut(s) 342
FaeI CATG 5 cut(s) 256, 523, 649, 778, 865
FaiI YATR 9 cut(s) 254, 366, 382, 521, 596, 639, 647, 776, 863
FaqI GGGAC 1 cut(s) 125
FatI CATG 5 cut(s) 252, 519, 645, 774, 861
FauI CCCGC 2 cut(s) 369, 553
Fnu4HI GCNGC 6 cut(s) 27, 30, 459, 462, 767, 870
FokI GGATG 4 cut(s) 30, 106, 536, 838
Fsp4HI GCNGC 6 cut(s) 27, 30, 459, 462, 767, 870
GlaI GCGC 1 cut(s) 873
GluI GCNGC 6 cut(s) 27, 30, 459, 462, 767, 870
GsaI CCCAGC 1 cut(s) 843
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 1 cut(s) 412
HgaI GACGC 1 cut(s) 306
HhaI GCGC 1 cut(s) 874
Hin1II CATG 5 cut(s) 256, 523, 649, 778, 865
Hin6I GCGC 1 cut(s) 872
HinP1I GCGC 1 cut(s) 872
HindIII AAGCTT 1 cut(s) 160
HinfI GANTC 2 cut(s) 257, 482
HphI GGTGA 8 cut(s) 143, 397, 502, 637, 661, 678, 706, 772
Hpy166II GTNNAC 2 cut(s) 388, 628
Hpy188I TCNGA 7 cut(s) 83, 116, 174, 204, 442, 601, 783
Hpy188III TCNNGA 3 cut(s) 303, 371, 712
Hpy8I GTNNAC 2 cut(s) 388, 628
HpyAV CCTTC 4 cut(s) 568, 709, 778, 859
HpyCH4III ACNGT 5 cut(s) 61, 89, 496, 605, 674
HpyCH4IV ACGT 2 cut(s) 515, 581
HpyCH4V TGCA 3 cut(s) 519, 769, 829
HpyF10VI GCNNNNNNNGC 1 cut(s) 845
HpyF3I CTNAG 3 cut(s) 80, 535, 875
HpySE526I ACGT 2 cut(s) 515, 581
Hsp92II CATG 5 cut(s) 256, 523, 649, 778, 865
HspAI GCGC 1 cut(s) 872
Kpn2I TCCGGA 1 cut(s) 302
KroI GCCGGC 1 cut(s) 727
KroNI GCCGGC 1 cut(s) 729
Kzo9I GATC 5 cut(s) 108, 221, 235, 323, 437
LmnI GCTCC 3 cut(s) 116, 305, 469
Lsp1109I GCAGC 4 cut(s) 41, 470, 753, 856
LweI GCATC 3 cut(s) 128, 415, 816
MaeII ACGT 2 cut(s) 515, 581
MaeIII GTNAC 5 cut(s) 490, 505, 674, 684, 709
MalI GATC 5 cut(s) 110, 223, 237, 325, 439
MboI GATC 5 cut(s) 108, 221, 235, 323, 437
MboII GAAGA 2 cut(s) 163, 216
MflI RGATCY 4 cut(s) 221, 235, 323, 437
MhlI GDGCHC 2 cut(s) 741, 810
MluCI AATT 1 cut(s) 664
MlyI GAGTC 2 cut(s) 251, 491
MroI TCCGGA 1 cut(s) 302
MroNI GCCGGC 1 cut(s) 727
MseI TTAA 4 cut(s) 66, 186, 609, 889
MslI CAYNNNNRTG 1 cut(s) 518
MspA1I CMGCKG 3 cut(s) 32, 280, 461
MspR9I CCNGG 4 cut(s) 143, 288, 344, 588
MvaI CCWGG 1 cut(s) 344
MvnI CGCG 2 cut(s) 26, 394
MwoI GCNNNNNNNGC 1 cut(s) 845
NaeI GCCGGC 1 cut(s) 729
NciI CCSGG 3 cut(s) 143, 288, 588
NdeII GATC 5 cut(s) 108, 221, 235, 323, 437
NgoMIV GCCGGC 1 cut(s) 727
NlaIII CATG 5 cut(s) 256, 523, 649, 778, 865
NlaIV GGNNCC 2 cut(s) 465, 807
NmeAIII GCCGAG 1 cut(s) 722
NmuCI GTSAC 5 cut(s) 490, 505, 674, 684, 709
NspI RCATGY 1 cut(s) 778
NspV TTCGAA 1 cut(s) 797
PciI ACATGT 1 cut(s) 774
PdiI GCCGGC 1 cut(s) 729
PfoI TCCNGGA 1 cut(s) 141
PkrI GCNGC 6 cut(s) 28, 31, 460, 463, 768, 871
PleI GAGTC 2 cut(s) 251, 490
PmaCI CACGTG 2 cut(s) 516, 582
PmlI CACGTG 2 cut(s) 516, 582
PpsI GAGTC 2 cut(s) 251, 490
Ppu21I YACGTR 2 cut(s) 516, 582
PscI ACATGT 1 cut(s) 774
PshAI GACNNNNGTC 1 cut(s) 582
PsiI TTATAA 1 cut(s) 639
Psp6I CCWGG 1 cut(s) 342
PspCI CACGTG 2 cut(s) 516, 582
PspFI CCCAGC 1 cut(s) 839
PspGI CCWGG 1 cut(s) 342
PspN4I GGNNCC 2 cut(s) 465, 807
PspPI GGNCC 2 cut(s) 204, 373
PstI CTGCAG 1 cut(s) 771
PsuI RGATCY 4 cut(s) 221, 235, 323, 437
PvuII CAGCTG 2 cut(s) 32, 280
RsaI GTAC 3 cut(s) 197, 544, 773
RsaNI GTAC 3 cut(s) 196, 543, 772
RseI CAYNNNNRTG 1 cut(s) 518
SaqAI TTAA 4 cut(s) 66, 186, 609, 889
SatI GCNGC 6 cut(s) 27, 30, 459, 462, 767, 870
Sau3AI GATC 5 cut(s) 108, 221, 235, 323, 437
Sau96I GGNCC 2 cut(s) 204, 373
SchI GAGTC 2 cut(s) 251, 491
ScrFI CCNGG 4 cut(s) 143, 288, 344, 588
SduI GDGCHC 2 cut(s) 741, 810
SfaNI GCATC 3 cut(s) 128, 415, 816
SfcI CTRYAG 1 cut(s) 767
SfuI TTCGAA 1 cut(s) 797
SinI GGWCC 2 cut(s) 204, 373
SmiMI CAYNNNNRTG 1 cut(s) 518
Sse9I AATT 1 cut(s) 664
StyD4I CCNGG 4 cut(s) 141, 286, 342, 586
TaaI ACNGT 5 cut(s) 61, 89, 496, 605, 674
TaiI ACGT 2 cut(s) 518, 584
TaqI TCGA 3 cut(s) 260, 529, 797
TaqII GACCGA 1 cut(s) 121
TasI AATT 1 cut(s) 664
TatI WGTACW 2 cut(s) 195, 771
TauI GCSGC 2 cut(s) 29, 464
Tru1I TTAA 4 cut(s) 66, 186, 609, 889
Tru9I TTAA 4 cut(s) 66, 186, 609, 889
TscAI CASTG 1 cut(s) 626
TseFI GTSAC 5 cut(s) 490, 505, 674, 684, 709
TseI GCWGC 4 cut(s) 29, 458, 766, 869
Tsp45I GTSAC 5 cut(s) 490, 505, 674, 684, 709
TspDTI ATGAA 1 cut(s) 878
TspGWI ACGGA 1 cut(s) 560
TspRI CASTG 1 cut(s) 626
VpaK11BI GGWCC 2 cut(s) 204, 373
XceI RCATGY 1 cut(s) 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.