Rroxscaffold_6G00429220

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000368
Physical Location & Seq
Reverse (-)
49580535 .. 49583226
2692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00429220.1

Sequence Viewer

Length: 936 bp
ATGGCGTTGAGAAATCCGGCCACCGTCGCCGCGTTATTACTCGCTCTGCTATTGATTTCCGACCCCAATTTTGCGTCCGCCGCTACGGGCGGACGGTCCGGCGGAAGCCTGTTCCCCTCCGGCGGAGATTCTTCTTCTTCTTCGTCTTCGTCTTCATCGTGGTCGGGGTCTTCGGGTTCATCGGACTCTTGGTCGTGGCACCACTCGCCATCGTCGTCTTCCTTGTCGGACGGTGGATTCTACGTCTTCTTGGTTTTAGCGGCGGTTGTGGTTGGTGTGGCGGTCATCTGCCGCTGTGCTGGTGTTGGGAAAACAAGCGTCGTCAAGCTTCAGGTTGGTCTGGTGGGAAAGGCGCGATCACTTCAAAAGGATCTTAATCGACTTACTGAAACTACAGATATGTCTACATCTATGGGTTTGAGCCATCTTTTGACAGGGGCATCAACATCTTTGCTTCGCAATCTTGATTATTGCATCTCAAGTTATTCATCTGTTACTCAAAAGTCCGAGACAGAAGATGCAGAGCAATGCTTCAGACAACTTTCTATGGAAGAAGCAGCTAAATTTGATGAAGTGACGCTTGCCAATGTGAACAACTTTATAGTGCGTTCAACAAGCCAGTCACCAAATGAAGGCCACAAAGAATATATAGTGGTTACAATTTTGGTGGCTACTCGAGGTGCACCAAAGTTGCCCAGCATCAATGGCCCTGGTGACTTGAAGAAAGCATTACAGAGTCTTGGATCCATTCCCTCGAACCAAATACTGGCGGTTGAGGTCTTGTGGACTCCTCAACAAGAAAATGATACTTTGACTGAGAAGGAACTACTTAAAGATTACCCGCAGTTGAGGGGCTTTTATGATGGAGGGTCACTTGAAGAAGGGCCATATGACGATTCCCACCCATTCTTAGGCGTTACTGTAGTCAAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

311

Amino Acids

32.82

Weight (kDa)

5.27

Isoelectric Point (pI)

54.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 105 - 284 2.2e-61 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 198
AccB7I CCANNNNNTGG 1 cut(s) 766
AccI GTMKAC 1 cut(s) 404
AccII CGCG 2 cut(s) 32, 355
AclWI GGATC 3 cut(s) 378, 738, 751
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 1 cut(s) 563
AcuI CTGAAG 2 cut(s) 314, 517
AfiI CCNNNNNNNGG 4 cut(s) 122, 632, 766, 911
AgsI TTSAA 4 cut(s) 365, 612, 721, 878
AhdI GACNNNNNGTC 1 cut(s) 190
AjnI CCWGG 1 cut(s) 709
AluBI AGCT 3 cut(s) 328, 560, 933
AluI AGCT 3 cut(s) 328, 560, 933
Alw21I GWGCWC 1 cut(s) 685
Alw26I GTCTC 1 cut(s) 503
Alw44I GTGCAC 1 cut(s) 681
AlwI GGATC 3 cut(s) 378, 738, 751
Ama87I CYCGRG 1 cut(s) 675
AoxI GGCC 4 cut(s) 18, 634, 706, 884
ApaLI GTGCAC 1 cut(s) 681
ApeKI GCWGC 1 cut(s) 557
ApoI RAATTY 1 cut(s) 563
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 3 cut(s) 96, 707, 884
AsuHPI GGTGA 2 cut(s) 615, 725
AvaI CYCGRG 1 cut(s) 675
AvaII GGWCC 1 cut(s) 96
BaeGI GKGCMC 1 cut(s) 685
BamHI GGATCC 1 cut(s) 743
BanI GGYRCC 1 cut(s) 198
BbsI GAAGAC 5 cut(s) 138, 144, 162, 210, 238
Bbv12I GWGCWC 1 cut(s) 685
BbvI GCAGC 1 cut(s) 569
BccI CCATC 3 cut(s) 217, 432, 857
BciT130I CCWGG 1 cut(s) 711
BcoDI GTCTC 1 cut(s) 503
BfaI CTAG 1 cut(s) 934
BfmI CTRYAG 2 cut(s) 393, 921
BisI GCNGC 5 cut(s) 30, 81, 261, 292, 558
BlsI GCNGC 5 cut(s) 31, 82, 262, 293, 559
Bme1390I CCNGG 1 cut(s) 711
Bme18I GGWCC 1 cut(s) 96
BmeRI GACNNNNNGTC 1 cut(s) 190
BmeT110I CYCGRG 1 cut(s) 675
BmgT120I GGNCC 3 cut(s) 96, 707, 884
BmiI GGNNCC 2 cut(s) 200, 745
BmrFI CCNGG 1 cut(s) 711
BmsI GCATC 4 cut(s) 449, 483, 508, 708
BpiI GAAGAC 5 cut(s) 138, 144, 162, 210, 238
BpuEI CTTGAG 1 cut(s) 463
BsaBI GATNNNNATC 1 cut(s) 375
BsaJI CCNNGG 1 cut(s) 709
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 632, 766, 911
Bse1I ACTGG 2 cut(s) 619, 771
Bse3DI GCAATG 1 cut(s) 533
Bse8I GATNNNNATC 1 cut(s) 375
BseBI CCWGG 1 cut(s) 711
BseDI CCNNGG 1 cut(s) 709
BseJI GATNNNNATC 1 cut(s) 375
BseLI CCNNNNNNNGG 4 cut(s) 122, 632, 766, 911
BseMI GCAATG 1 cut(s) 533
BseMII CTCAG 1 cut(s) 807
BseNI ACTGG 2 cut(s) 619, 771
BseRI GAGGAG 1 cut(s) 780
BseSI GKGCMC 1 cut(s) 685
BseXI GCAGC 1 cut(s) 569
BseYI CCCAGC 1 cut(s) 695
Bsh1236I CGCG 2 cut(s) 32, 355
BshFI GGCC 4 cut(s) 20, 636, 708, 886
BshNI GGYRCC 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 685
BsiHKCI CYCGRG 1 cut(s) 675
BsiSI CCGG 3 cut(s) 17, 99, 120
BslI CCNNNNNNNGG 4 cut(s) 122, 632, 766, 911
BsmAI GTCTC 1 cut(s) 503
BsnI GGCC 4 cut(s) 20, 636, 708, 886
BsoBI CYCGRG 1 cut(s) 675
Bsp1286I GDGCHC 1 cut(s) 685
Bsp143I GATC 3 cut(s) 356, 370, 743
BspANI GGCC 4 cut(s) 20, 636, 708, 886
BspCNI CTCAG 1 cut(s) 808
BspFNI CGCG 2 cut(s) 32, 355
BspLI GGNNCC 2 cut(s) 200, 745
BspPI GGATC 3 cut(s) 378, 738, 751
BspT107I GGYRCC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 533
BsrI ACTGG 2 cut(s) 619, 771
BssECI CCNNGG 1 cut(s) 709
BssMI GATC 3 cut(s) 356, 370, 743
Bst2UI CCWGG 1 cut(s) 711
Bst4CI ACNGT 4 cut(s) 25, 96, 233, 922
BstC8I GCNNGC 1 cut(s) 582
BstDEI CTNAG 2 cut(s) 816, 910
BstFNI CGCG 2 cut(s) 32, 355
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 3 cut(s) 359, 373, 746
BstMAI GTCTC 1 cut(s) 503
BstMBI GATC 3 cut(s) 356, 370, 743
BstMWI GCNNNNNNNGC 4 cut(s) 26, 80, 205, 705
BstNI CCWGG 1 cut(s) 711
BstSCI CCNGG 1 cut(s) 709
BstSFI CTRYAG 2 cut(s) 393, 921
BstSLI GKGCMC 1 cut(s) 685
BstUI CGCG 2 cut(s) 32, 355
BstV1I GCAGC 1 cut(s) 569
BstV2I GAAGAC 5 cut(s) 138, 144, 162, 210, 238
BstX2I RGATCY 2 cut(s) 370, 743
BstYI RGATCY 2 cut(s) 370, 743
BsuRI GGCC 4 cut(s) 20, 636, 708, 886
Cac8I GCNNGC 1 cut(s) 582
CfoI GCGC 1 cut(s) 355
Cfr13I GGNCC 3 cut(s) 96, 707, 884
CpoI CGGWCCG 1 cut(s) 96
CseI GACGC 3 cut(s) 63, 307, 586
CspCI CAANNNNNGTGG 2 cut(s) 648, 683
CspI CGGWCCG 1 cut(s) 96
DdeI CTNAG 2 cut(s) 816, 910
DpnI GATC 3 cut(s) 358, 372, 745
DpnII GATC 3 cut(s) 356, 370, 743
DriI GACNNNNNGTC 1 cut(s) 190
EaeI YGGCCR 1 cut(s) 18
Eam1105I GACNNNNNGTC 1 cut(s) 190
EciI GGCGGA 4 cut(s) 67, 105, 117, 138
Eco47I GGWCC 1 cut(s) 96
Eco57I CTGAAG 2 cut(s) 314, 517
Eco88I CYCGRG 1 cut(s) 675
EcoRII CCWGG 1 cut(s) 709
FaiI YATR 9 cut(s) 401, 413, 548, 602, 648, 650, 861, 889, 891
FalI AAGNNNNNCTT 2 cut(s) 564, 596
FauI CCCGC 1 cut(s) 849
FauNDI CATATG 1 cut(s) 889
FblI GTMKAC 1 cut(s) 404
Fnu4HI GCNGC 5 cut(s) 30, 81, 261, 292, 558
Fsp4HI GCNGC 5 cut(s) 30, 81, 261, 292, 558
FspBI CTAG 1 cut(s) 934
GlaI GCGC 1 cut(s) 354
GluI GCNGC 5 cut(s) 30, 81, 261, 292, 558
GsaI CCCAGC 1 cut(s) 699
HaeIII GGCC 4 cut(s) 20, 636, 708, 886
HapII CCGG 3 cut(s) 17, 99, 120
HgaI GACGC 3 cut(s) 63, 307, 586
HhaI GCGC 1 cut(s) 355
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 6 cut(s) 128, 185, 237, 736, 787, 896
HpaII CCGG 3 cut(s) 17, 99, 120
HphI GGTGA 2 cut(s) 615, 725
Hpy166II GTNNAC 4 cut(s) 405, 592, 683, 786
Hpy188I TCNGA 5 cut(s) 61, 184, 229, 508, 536
Hpy188III TCNNGA 2 cut(s) 464, 928
Hpy8I GTNNAC 4 cut(s) 405, 592, 683, 786
Hpy99I CGWCG 3 cut(s) 29, 217, 323
HpyAV CCTTC 3 cut(s) 626, 814, 875
HpyCH4III ACNGT 4 cut(s) 25, 96, 233, 922
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 3 cut(s) 474, 521, 683
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 80, 205, 705
HpyF3I CTNAG 2 cut(s) 816, 910
HpySE526I ACGT 1 cut(s) 243
HspAI GCGC 1 cut(s) 353
Kzo9I GATC 3 cut(s) 356, 370, 743
Lsp1109I GCAGC 1 cut(s) 569
LweI GCATC 4 cut(s) 449, 483, 508, 708
MaeI CTAG 1 cut(s) 934
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 7 cut(s) 493, 574, 621, 655, 713, 870, 916
MalI GATC 3 cut(s) 358, 372, 745
MboI GATC 3 cut(s) 356, 370, 743
MflI RGATCY 2 cut(s) 370, 743
MhlI GDGCHC 1 cut(s) 685
MluCI AATT 3 cut(s) 67, 563, 660
MlyI GAGTC 3 cut(s) 179, 745, 781
MmeI TCCRAC 2 cut(s) 84, 207
MnlI CCTC 7 cut(s) 127, 671, 763, 769, 801, 843, 860
MseI TTAA 2 cut(s) 375, 831
MspA1I CMGCKG 1 cut(s) 294
MspI CCGG 3 cut(s) 17, 99, 120
MspR9I CCNGG 1 cut(s) 711
MvaI CCWGG 1 cut(s) 711
MvnI CGCG 2 cut(s) 32, 355
MwoI GCNNNNNNNGC 4 cut(s) 26, 80, 205, 705
NdeI CATATG 1 cut(s) 889
NdeII GATC 3 cut(s) 356, 370, 743
NlaIV GGNNCC 2 cut(s) 200, 745
NmuCI GTSAC 4 cut(s) 574, 621, 713, 870
PaeR7I CTCGAG 1 cut(s) 675
PcsI WCGNNNNNNNCGW 2 cut(s) 155, 212
PfeI GAWTC 3 cut(s) 128, 237, 896
PflMI CCANNNNNTGG 1 cut(s) 766
PkrI GCNGC 5 cut(s) 31, 82, 262, 293, 559
PleI GAGTC 3 cut(s) 179, 744, 781
PpsI GAGTC 3 cut(s) 179, 744, 781
Psp6I CCWGG 1 cut(s) 709
PspFI CCCAGC 1 cut(s) 695
PspGI CCWGG 1 cut(s) 709
PspN4I GGNNCC 2 cut(s) 200, 745
PspPI GGNCC 3 cut(s) 96, 707, 884
PspXI VCTCGAGB 1 cut(s) 675
PsuI RGATCY 2 cut(s) 370, 743
Rsr2I CGGWCCG 1 cut(s) 96
RsrII CGGWCCG 1 cut(s) 96
SaqAI TTAA 2 cut(s) 375, 831
SatI GCNGC 5 cut(s) 30, 81, 261, 292, 558
Sau3AI GATC 3 cut(s) 356, 370, 743
Sau96I GGNCC 3 cut(s) 96, 707, 884
SchI GAGTC 3 cut(s) 179, 745, 781
ScrFI CCNGG 1 cut(s) 711
SduI GDGCHC 1 cut(s) 685
SetI ASST 7 cut(s) 246, 330, 336, 562, 682, 780, 935
SfaNI GCATC 4 cut(s) 449, 483, 508, 708
SfcI CTRYAG 2 cut(s) 393, 921
Sfr274I CTCGAG 1 cut(s) 675
SinI GGWCC 1 cut(s) 96
SlaI CTCGAG 1 cut(s) 675
SmlI CTYRAG 2 cut(s) 478, 675
SmoI CTYRAG 2 cut(s) 478, 675
Sse9I AATT 3 cut(s) 67, 563, 660
SspMI CTAG 1 cut(s) 934
StyD4I CCNGG 1 cut(s) 709
TaaI ACNGT 4 cut(s) 25, 96, 233, 922
TaiI ACGT 1 cut(s) 246
TaqI TCGA 3 cut(s) 379, 676, 755
TasI AATT 3 cut(s) 67, 563, 660
TauI GCSGC 4 cut(s) 32, 83, 263, 294
TfiI GAWTC 3 cut(s) 128, 237, 896
Tru1I TTAA 2 cut(s) 375, 831
Tru9I TTAA 2 cut(s) 375, 831
TseFI GTSAC 4 cut(s) 574, 621, 713, 870
TseI GCWGC 1 cut(s) 557
Tsp45I GTSAC 4 cut(s) 574, 621, 713, 870
TspDTI ATGAA 5 cut(s) 144, 168, 477, 585, 645
Van91I CCANNNNNTGG 1 cut(s) 766
VneI GTGCAC 1 cut(s) 681
VpaK11BI GGWCC 1 cut(s) 96
XapI RAATTY 1 cut(s) 563
XhoI CTCGAG 1 cut(s) 675
XmiI GTMKAC 1 cut(s) 404
XspI CTAG 1 cut(s) 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.