Rh3DG041100

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000368
Physical Location & Seq
Forward (+)
2731849 .. 2735828
3980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG041100.1

Sequence Viewer

Length: 843 bp
ATGGCAATAACTGCTTCTTTGCTCCAACCCAATCTCCTGAAATGGAACCAAACCCACCACCACCACCCTCTTCTCTTCTCCCCTTTCCGCCCCAATATACTCAAACTCAACACCCCGCAATCTTTCAAGCTCAAATGCTCCTCCTCCGAATCCAAACCAGACCTCGTGGCAGTGAAACCGAACCCAATAGAGGTTTTGGCAGATAAGCTCTTGAAGGCTCTCAAGGCGCTGAGGAAGCCCGCAATGGCGGCGGTGTTATTGGGCCTGGTGTTGATGTCCGACCCGAACTCGGCTTTGGCCGCCTCGGGCGGTCGGGTCGGGGGCAAGGCCTTCTCGTCGCGCTCCAATTCTTCGTCGTCGTCGAGGAGTTACTCGGTGCCGAGGACGTCGAGGCCGGATTACTCGTACTCTGCGCCGTACTACGCGCCTTCGCCGTTCGGGTTTAGCGGCGGAGGAGGCGGGTTTTATATGGGCCCGGCGGTCGGGGTCGGAGTCGGAGCCGGGTCGAGTTTCTTTCTGATTTTGACGGGTTTTGCTGCGTTTGTTTTGGTTTCGGGTTTTCTTTCGGATCGGTCTGAGGGGAGTGTGCTTACTGCTACTGAGAAAACTACTGTTTTGAAGTTGCAGGTTGGGTTGTTGGGATTGGGGCGAACACTACAAAGGGATCTCGATCGGATTGCCGATACTGCAGATACTTCTACCCCCGAGGGATTGAGCTATGTTCTGACAGAGACAACACTAGCATTGCTTAGGCATCCTGATTATTGCATCTCAGGTTATTCGTCGGTAAGTTCGATATCCTTCCGTAGAATACTTGGTATATGCACACAGGTGAATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

280

Amino Acids

29.72

Weight (kDa)

9.62

Isoelectric Point (pI)

51.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 203 - 266 4.8e-20 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 389
Acc36I ACCTGC 1 cut(s) 616
AccB1I GGYRCC 1 cut(s) 376
AccII CGCG 2 cut(s) 340, 425
AclWI GGATC 2 cut(s) 576, 672
AcoI YGGCCR 1 cut(s) 297
AcyI GRCGYC 1 cut(s) 386
AfaI GTAC 2 cut(s) 407, 419
AfiI CCNNNNNNNGG 3 cut(s) 190, 289, 482
AgsI TTSAA 3 cut(s) 127, 214, 619
AjnI CCWGG 1 cut(s) 264
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AleI CACNNNNGTG 1 cut(s) 830
AluBI AGCT 3 cut(s) 130, 208, 717
AluI AGCT 3 cut(s) 130, 208, 717
Alw26I GTCTC 1 cut(s) 725
AlwI GGATC 2 cut(s) 576, 672
Ama87I CYCGRG 2 cut(s) 304, 704
AoxI GGCC 5 cut(s) 262, 297, 327, 392, 472
ApaI GGGCCC 1 cut(s) 476
ApeKI GCWGC 1 cut(s) 536
AspLEI GCGC 4 cut(s) 229, 342, 415, 427
AspS9I GGNCC 3 cut(s) 262, 472, 473
AsuC2I CCSGG 2 cut(s) 476, 502
AvaI CYCGRG 2 cut(s) 304, 704
BaeGI GKGCMC 1 cut(s) 476
BanI GGYRCC 1 cut(s) 376
BanII GRGCYC 1 cut(s) 476
BauI CACGAG 1 cut(s) 164
BbvCI CCTCAGC 1 cut(s) 230
BbvI GCAGC 1 cut(s) 523
BceAI ACGGC 2 cut(s) 400, 418
BcgI CGANNNNNNTGC 2 cut(s) 659, 693
BciT130I CCWGG 1 cut(s) 266
BcnI CCSGG 2 cut(s) 476, 502
BcoDI GTCTC 1 cut(s) 725
BfaI CTAG 1 cut(s) 740
BfmI CTRYAG 1 cut(s) 687
BfoI RGCGCY 1 cut(s) 230
BfuAI ACCTGC 1 cut(s) 616
BisI GCNGC 4 cut(s) 249, 300, 448, 537
BlsI GCNGC 4 cut(s) 250, 301, 449, 538
Bme1390I CCNGG 3 cut(s) 266, 476, 502
BmeT110I CYCGRG 2 cut(s) 304, 704
BmgT120I GGNCC 3 cut(s) 262, 472, 473
BmiI GGNNCC 4 cut(s) 47, 378, 474, 499
BmrFI CCNGG 3 cut(s) 266, 476, 502
BmsI GCATC 2 cut(s) 763, 777
Bpu10I CCTNAGC 2 cut(s) 230, 749
BpuEI CTTGAG 1 cut(s) 206
BpuMI CCSGG 2 cut(s) 476, 502
BsaBI GATNNNNATC 1 cut(s) 669
BsaHI GRCGYC 1 cut(s) 386
BsaJI CCNNGG 3 cut(s) 303, 380, 705
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 289, 482
Bse3DI GCAATG 2 cut(s) 249, 743
Bse8I GATNNNNATC 1 cut(s) 669
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 3 cut(s) 303, 380, 705
BseGI GGATG 1 cut(s) 754
BseJI GATNNNNATC 1 cut(s) 669
BseLI CCNNNNNNNGG 3 cut(s) 190, 289, 482
BseMI GCAATG 2 cut(s) 249, 743
BseMII CTCAG 4 cut(s) 221, 567, 591, 786
BseRI GAGGAG 4 cut(s) 130, 133, 379, 468
BseSI GKGCMC 1 cut(s) 476
BseXI GCAGC 1 cut(s) 523
Bsh1236I CGCG 2 cut(s) 340, 425
Bsh1285I CGRYCG 3 cut(s) 313, 483, 673
BshFI GGCC 5 cut(s) 264, 299, 329, 394, 474
BshNI GGYRCC 1 cut(s) 376
BsiEI CGRYCG 3 cut(s) 313, 483, 673
BsiHKCI CYCGRG 2 cut(s) 304, 704
BsiSI CCGG 3 cut(s) 395, 476, 501
BslI CCNNNNNNNGG 3 cut(s) 190, 289, 482
BsmAI GTCTC 1 cut(s) 725
BsnI GGCC 5 cut(s) 264, 299, 329, 394, 474
BsoBI CYCGRG 2 cut(s) 304, 704
Bsp120I GGGCCC 1 cut(s) 472
Bsp1286I GDGCHC 1 cut(s) 476
Bsp143I GATC 3 cut(s) 568, 664, 670
BspANI GGCC 5 cut(s) 264, 299, 329, 394, 474
BspCNI CTCAG 4 cut(s) 222, 568, 592, 785
BspFNI CGCG 2 cut(s) 340, 425
BspLI GGNNCC 4 cut(s) 47, 378, 474, 499
BspMAI CTGCAG 1 cut(s) 691
BspMI ACCTGC 1 cut(s) 616
BspPI GGATC 2 cut(s) 576, 672
BspT107I GGYRCC 1 cut(s) 376
BsrDI GCAATG 2 cut(s) 249, 743
BssECI CCNNGG 3 cut(s) 303, 380, 705
BssMI GATC 3 cut(s) 568, 664, 670
BssNI GRCGYC 1 cut(s) 386
BssSI CACGAG 1 cut(s) 164
Bst2BI CACGAG 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 613
Bst6I CTCTTC 2 cut(s) 75, 80
BstACI GRCGYC 1 cut(s) 386
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 5 cut(s) 230, 576, 600, 749, 772
BstF5I GGATG 1 cut(s) 754
BstFNI CGCG 2 cut(s) 340, 425
BstH2I RGCGCY 1 cut(s) 230
BstHHI GCGC 4 cut(s) 229, 342, 415, 427
BstKTI GATC 3 cut(s) 571, 667, 673
BstMAI GTCTC 1 cut(s) 725
BstMBI GATC 3 cut(s) 568, 664, 670
BstMCI CGRYCG 3 cut(s) 313, 483, 673
BstMWI GCNNNNNNNGC 7 cut(s) 11, 224, 235, 248, 299, 456, 686
BstNI CCWGG 1 cut(s) 266
BstSCI CCNGG 3 cut(s) 264, 474, 500
BstSFI CTRYAG 1 cut(s) 687
BstSLI GKGCMC 1 cut(s) 476
BstUI CGCG 2 cut(s) 340, 425
BstV1I GCAGC 1 cut(s) 523
BstX2I RGATCY 1 cut(s) 664
BstYI RGATCY 1 cut(s) 664
BsuRI GGCC 5 cut(s) 264, 299, 329, 394, 474
BtsCI GGATG 1 cut(s) 754
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 177
BveI ACCTGC 1 cut(s) 616
Cac8I GCNNGC 1 cut(s) 240
CfoI GCGC 4 cut(s) 229, 342, 415, 427
Cfr13I GGNCC 3 cut(s) 262, 472, 473
Csp6I GTAC 2 cut(s) 406, 418
CviQI GTAC 2 cut(s) 406, 418
DdeI CTNAG 5 cut(s) 230, 576, 600, 749, 772
DpnI GATC 3 cut(s) 570, 666, 672
DpnII GATC 3 cut(s) 568, 664, 670
EaeI YGGCCR 1 cut(s) 297
Eam1104I CTCTTC 2 cut(s) 75, 80
EarI CTCTTC 2 cut(s) 75, 80
EciI GGCGGA 2 cut(s) 77, 465
Eco147I AGGCCT 1 cut(s) 329
Eco24I GRGCYC 1 cut(s) 476
Eco32I GATATC 1 cut(s) 798
Eco88I CYCGRG 2 cut(s) 304, 704
EcoRII CCWGG 1 cut(s) 264
EcoRV GATATC 1 cut(s) 798
EcoT38I GRGCYC 1 cut(s) 476
FaiI YATR 6 cut(s) 98, 468, 470, 720, 821, 823
FauI CCCGC 3 cut(s) 123, 247, 452
Fnu4HI GCNGC 4 cut(s) 249, 300, 448, 537
FokI GGATG 1 cut(s) 741
FriOI GRGCYC 1 cut(s) 476
Fsp4HI GCNGC 4 cut(s) 249, 300, 448, 537
FspBI CTAG 1 cut(s) 740
GlaI GCGC 4 cut(s) 228, 341, 414, 426
GluI GCNGC 4 cut(s) 249, 300, 448, 537
HaeII RGCGCY 1 cut(s) 230
HaeIII GGCC 5 cut(s) 264, 299, 329, 394, 474
HapII CCGG 3 cut(s) 395, 476, 501
HhaI GCGC 4 cut(s) 229, 342, 415, 427
Hin1I GRCGYC 1 cut(s) 386
Hin6I GCGC 4 cut(s) 227, 340, 413, 425
HinP1I GCGC 4 cut(s) 227, 340, 413, 425
HinfI GANTC 2 cut(s) 149, 492
HpaII CCGG 3 cut(s) 395, 476, 501
Hpy188I TCNGA 9 cut(s) 148, 280, 491, 497, 519, 568, 577, 675, 726
Hpy188III TCNNGA 4 cut(s) 37, 211, 668, 758
Hpy99I CGWCG 6 cut(s) 340, 358, 361, 364, 391, 787
HpyAV CCTTC 4 cut(s) 208, 340, 438, 811
HpyCH4III ACNGT 1 cut(s) 613
HpyCH4IV ACGT 1 cut(s) 386
HpyCH4V TGCA 4 cut(s) 625, 689, 768, 825
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 224, 235, 248, 299, 456, 686
HpyF3I CTNAG 5 cut(s) 230, 576, 600, 749, 772
HpySE526I ACGT 1 cut(s) 386
Hsp92I GRCGYC 1 cut(s) 386
HspAI GCGC 4 cut(s) 227, 340, 413, 425
Kzo9I GATC 3 cut(s) 568, 664, 670
LmnI GCTCC 4 cut(s) 27, 143, 347, 497
Lsp1109I GCAGC 1 cut(s) 523
LweI GCATC 2 cut(s) 763, 777
MaeI CTAG 1 cut(s) 740
MaeII ACGT 1 cut(s) 386
MaeIII GTNAC 1 cut(s) 368
MalI GATC 3 cut(s) 570, 666, 672
MboI GATC 3 cut(s) 568, 664, 670
MboII GAAGA 3 cut(s) 62, 67, 342
MflI RGATCY 1 cut(s) 664
MhlI GDGCHC 1 cut(s) 476
MluCI AATT 1 cut(s) 346
MlyI GAGTC 1 cut(s) 501
MmeI TCCRAC 4 cut(s) 49, 303, 469, 475
MslI CAYNNNNRTG 1 cut(s) 830
MspI CCGG 3 cut(s) 395, 476, 501
MspR9I CCNGG 3 cut(s) 266, 476, 502
MvaI CCWGG 1 cut(s) 266
MvnI CGCG 2 cut(s) 340, 425
MwoI GCNNNNNNNGC 7 cut(s) 11, 224, 235, 248, 299, 456, 686
NciI CCSGG 2 cut(s) 476, 502
NdeII GATC 3 cut(s) 568, 664, 670
NlaIV GGNNCC 4 cut(s) 47, 378, 474, 499
NmeAIII GCCGAG 2 cut(s) 269, 405
OliI CACNNNNGTG 1 cut(s) 830
PceI AGGCCT 1 cut(s) 329
PcsI WCGNNNNNNNCGW 2 cut(s) 359, 791
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 4 cut(s) 250, 301, 449, 538
Ple19I CGATCG 1 cut(s) 673
PleI GAGTC 1 cut(s) 500
PpsI GAGTC 1 cut(s) 500
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 4 cut(s) 47, 378, 474, 499
PspOMI GGGCCC 1 cut(s) 472
PspPI GGNCC 3 cut(s) 262, 472, 473
PstI CTGCAG 1 cut(s) 691
PsuI RGATCY 1 cut(s) 664
PvuI CGATCG 1 cut(s) 673
RsaI GTAC 2 cut(s) 407, 419
RsaNI GTAC 2 cut(s) 406, 418
RseI CAYNNNNRTG 1 cut(s) 830
SatI GCNGC 4 cut(s) 249, 300, 448, 537
Sau3AI GATC 3 cut(s) 568, 664, 670
Sau96I GGNCC 3 cut(s) 262, 472, 473
SchI GAGTC 1 cut(s) 501
ScrFI CCNGG 3 cut(s) 266, 476, 502
SduI GDGCHC 1 cut(s) 476
SetI ASST 9 cut(s) 132, 165, 195, 210, 389, 630, 719, 778, 834
SfaNI GCATC 2 cut(s) 763, 777
SfcI CTRYAG 1 cut(s) 687
SmiMI CAYNNNNRTG 1 cut(s) 830
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 1 cut(s) 346
SseBI AGGCCT 1 cut(s) 329
SspMI CTAG 1 cut(s) 740
StuI AGGCCT 1 cut(s) 329
StyD4I CCNGG 3 cut(s) 264, 474, 500
TaaI ACNGT 1 cut(s) 613
TaiI ACGT 1 cut(s) 389
TaqI TCGA 5 cut(s) 362, 389, 506, 669, 794
TaqII GACCGA 1 cut(s) 561
TasI AATT 1 cut(s) 346
TauI GCSGC 3 cut(s) 251, 302, 450
TfiI GAWTC 1 cut(s) 149
TscAI CASTG 1 cut(s) 177
TseI GCWGC 1 cut(s) 536
TspGWI ACGGA 1 cut(s) 794
TspRI CASTG 1 cut(s) 177
XspI CTAG 1 cut(s) 740
ZraI GACGTC 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.