Rmu_sc0001448.1_g000009

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001448.1
OG0000368
Physical Location & Seq
Forward (+)
58231 .. 60658
2428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001448.1_g000009.1.cds

Sequence Viewer

Length: 1167 bp
atggcaataactgcttctttgctccaacccaatcccctgaaatggaaccaaacccaccaccaccctcaccctcttctcttctcccctttccgccccaatatactcaaactcaacaccccgcaatctttcaagctcaaatgctcctcctccgaatccaaaccagacctcgtggcagtgaaaccgaacccaatagaggttttagcagataagctcttgaaggctctcaaggcgctgaggaagcccgcaatggcggcggtgttattgggcctggtgttgatgtccgacccgagttcggctttggccgcctcgggcggtcgggtcgggggcaaggccttctcgtcgcgctcgaattcttcgtcgtcgtcgaggagttactcggtgccgaggacgtcgaggccggattactcgtactctgcgccgtactacgcgccttcgccgttcgggtttagcggcggaggaggcgggttttatatgggcccggcggtaggggtcggagtcggagccgggtcgagtttctttctgattttgacgggttttgcggcgtttgttttggtttcgggttttctttcggatcggtctgaggggagtgtgcttactgctactgagaaaactactgttttgaagttgcaggttgggttgttgggattggggcgaacactacagagggatcttgatcggattgccgatactgcagatacttctacccccgagggattgagctatgttctgacagagacaacactagcattgcttaggcatcctgattattgcatctcaggttattcgtcgggcttccctgattttcagcttccaccaccacatgattcacaacttgaagagttacatttgtggggttggcctaagctcaagtctctgccccaacaaattcagcactctacttctttaaaatctctctggatagattattttaggggaatagaggctcttcctgagtggttgggaaatcttacatctcttgagactctgactatctggttctgtagaaacctcaagtctctgcctacacaagatgctatgaaaagcctcaccaaattgaacaatctctccatttatagttgccccctgctcaagaaaagatgcaccaggagactggccccgaatggcccaagatttctcacatcccagaacttgagtgtaatgttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

388

Amino Acids

42.23

Weight (kDa)

9.59

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 392
Acc36I ACCTGC 1 cut(s) 619
AccB1I GGYRCC 1 cut(s) 379
AccII CGCG 2 cut(s) 343, 428
AclWI GGATC 2 cut(s) 579, 675
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 2 cut(s) 349, 885
AcyI GRCGYC 1 cut(s) 389
AfaI GTAC 2 cut(s) 410, 422
AfiI CCNNNNNNNGG 4 cut(s) 42, 193, 292, 485
AgsI TTSAA 5 cut(s) 130, 217, 622, 836, 1057
AjnI CCWGG 2 cut(s) 267, 1103
AloI GAACNNNNNNTCC 2 cut(s) 1049, 1081
AluBI AGCT 5 cut(s) 133, 211, 720, 808, 865
AluI AGCT 5 cut(s) 133, 211, 720, 808, 865
Alw26I GTCTC 5 cut(s) 728, 876, 974, 1020, 1102
AlwI GGATC 2 cut(s) 579, 675
Ama87I CYCGRG 3 cut(s) 286, 307, 707
AoxI GGCC 8 cut(s) 265, 300, 330, 395, 475, 857, 1113, 1123
ApaI GGGCCC 1 cut(s) 479
ApoI RAATTY 2 cut(s) 349, 885
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
AspLEI GCGC 4 cut(s) 232, 345, 418, 430
AspS9I GGNCC 5 cut(s) 265, 475, 476, 1114, 1124
AsuC2I CCSGG 2 cut(s) 479, 505
AsuHPI GGTGA 2 cut(s) 59, 1039
AvaI CYCGRG 3 cut(s) 286, 307, 707
BaeGI GKGCMC 1 cut(s) 479
BanI GGYRCC 1 cut(s) 379
BanII GRGCYC 1 cut(s) 479
BauI CACGAG 1 cut(s) 167
BbvCI CCTCAGC 1 cut(s) 233
BceAI ACGGC 2 cut(s) 403, 421
BciT130I CCWGG 2 cut(s) 269, 1105
BcnI CCSGG 2 cut(s) 479, 505
BcoDI GTCTC 5 cut(s) 728, 876, 974, 1020, 1102
BfaI CTAG 1 cut(s) 743
BfmI CTRYAG 3 cut(s) 659, 690, 1000
BfoI RGCGCY 1 cut(s) 233
BfuAI ACCTGC 1 cut(s) 619
BisI GCNGC 4 cut(s) 252, 303, 451, 540
BlsI GCNGC 4 cut(s) 253, 304, 452, 541
Bme1390I CCNGG 4 cut(s) 269, 479, 505, 1105
BmeT110I CYCGRG 3 cut(s) 286, 307, 707
BmgT120I GGNCC 5 cut(s) 265, 475, 476, 1114, 1124
BmiI GGNNCC 5 cut(s) 47, 381, 477, 502, 1116
BmrFI CCNGG 4 cut(s) 269, 479, 505, 1105
BmsI GCATC 4 cut(s) 766, 780, 1021, 1088
Bpu10I CCTNAGC 3 cut(s) 233, 752, 861
BpuEI CTTGAG 5 cut(s) 209, 851, 995, 998, 1073
BpuMI CCSGG 2 cut(s) 479, 505
BsaBI GATNNNNATC 1 cut(s) 672
BsaHI GRCGYC 1 cut(s) 389
BsaJI CCNNGG 3 cut(s) 306, 383, 708
BsaXI ACNNNNNCTCC 2 cut(s) 1049, 1079
Bsc4I CCNNNNNNNGG 4 cut(s) 42, 193, 292, 485
Bse1I ACTGG 1 cut(s) 1116
Bse3DI GCAATG 2 cut(s) 252, 746
Bse8I GATNNNNATC 1 cut(s) 672
BseBI CCWGG 2 cut(s) 269, 1105
BseDI CCNNGG 3 cut(s) 306, 383, 708
BseGI GGATG 2 cut(s) 757, 1139
BseJI GATNNNNATC 1 cut(s) 672
BseLI CCNNNNNNNGG 4 cut(s) 42, 193, 292, 485
BseMI GCAATG 2 cut(s) 252, 746
BseMII CTCAG 5 cut(s) 224, 570, 594, 789, 942
BseNI ACTGG 1 cut(s) 1116
BseRI GAGGAG 4 cut(s) 133, 136, 382, 471
BseSI GKGCMC 1 cut(s) 479
Bsh1236I CGCG 2 cut(s) 343, 428
Bsh1285I CGRYCG 1 cut(s) 316
BshFI GGCC 8 cut(s) 267, 302, 332, 397, 477, 859, 1115, 1125
BshNI GGYRCC 1 cut(s) 379
BsiEI CGRYCG 1 cut(s) 316
BsiHKCI CYCGRG 3 cut(s) 286, 307, 707
BsiSI CCGG 3 cut(s) 398, 479, 504
BslI CCNNNNNNNGG 4 cut(s) 42, 193, 292, 485
BsmAI GTCTC 5 cut(s) 728, 876, 974, 1020, 1102
BsnI GGCC 8 cut(s) 267, 302, 332, 397, 477, 859, 1115, 1125
BsoBI CYCGRG 3 cut(s) 286, 307, 707
Bsp120I GGGCCC 1 cut(s) 475
Bsp1286I GDGCHC 1 cut(s) 479
Bsp143I GATC 3 cut(s) 571, 667, 673
BspANI GGCC 8 cut(s) 267, 302, 332, 397, 477, 859, 1115, 1125
BspCNI CTCAG 5 cut(s) 225, 571, 595, 788, 943
BspFNI CGCG 2 cut(s) 343, 428
BspLI GGNNCC 5 cut(s) 47, 381, 477, 502, 1116
BspMAI CTGCAG 1 cut(s) 694
BspMI ACCTGC 1 cut(s) 619
BspPI GGATC 2 cut(s) 579, 675
BspQI GCTCTTC 1 cut(s) 951
BspT107I GGYRCC 1 cut(s) 379
BsrDI GCAATG 2 cut(s) 252, 746
BsrI ACTGG 1 cut(s) 1116
BssECI CCNNGG 3 cut(s) 306, 383, 708
BssMI GATC 3 cut(s) 571, 667, 673
BssNI GRCGYC 1 cut(s) 389
BssSI CACGAG 1 cut(s) 167
Bst2BI CACGAG 1 cut(s) 167
Bst2UI CCWGG 2 cut(s) 269, 1105
Bst4CI ACNGT 1 cut(s) 616
Bst6I CTCTTC 4 cut(s) 78, 83, 831, 951
BstACI GRCGYC 1 cut(s) 389
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 7 cut(s) 233, 579, 603, 752, 775, 861, 951
BstF5I GGATG 2 cut(s) 757, 1139
BstFNI CGCG 2 cut(s) 343, 428
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 4 cut(s) 232, 345, 418, 430
BstKTI GATC 3 cut(s) 574, 670, 676
BstMAI GTCTC 5 cut(s) 728, 876, 974, 1020, 1102
BstMBI GATC 3 cut(s) 571, 667, 673
BstMCI CGRYCG 1 cut(s) 316
BstMWI GCNNNNNNNGC 7 cut(s) 11, 227, 238, 251, 302, 459, 689
BstNI CCWGG 2 cut(s) 269, 1105
BstSCI CCNGG 4 cut(s) 267, 477, 503, 1103
BstSFI CTRYAG 3 cut(s) 659, 690, 1000
BstSLI GKGCMC 1 cut(s) 479
BstUI CGCG 2 cut(s) 343, 428
BstX2I RGATCY 1 cut(s) 667
BstXI CCANNNNNNTGG 1 cut(s) 1111
BstYI RGATCY 1 cut(s) 667
BsuRI GGCC 8 cut(s) 267, 302, 332, 397, 477, 859, 1115, 1125
BtsCI GGATG 2 cut(s) 757, 1139
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 180
BveI ACCTGC 1 cut(s) 619
Cac8I GCNNGC 1 cut(s) 243
CfoI GCGC 4 cut(s) 232, 345, 418, 430
Cfr13I GGNCC 5 cut(s) 265, 475, 476, 1114, 1124
Csp6I GTAC 2 cut(s) 409, 421
CviAII CATG 1 cut(s) 821
CviQI GTAC 2 cut(s) 409, 421
DdeI CTNAG 7 cut(s) 233, 579, 603, 752, 775, 861, 951
DpnI GATC 3 cut(s) 573, 669, 675
DpnII GATC 3 cut(s) 571, 667, 673
DraI TTTAAA 1 cut(s) 906
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 4 cut(s) 78, 83, 831, 951
EarI CTCTTC 4 cut(s) 78, 83, 831, 951
EciI GGCGGA 2 cut(s) 80, 468
Eco147I AGGCCT 1 cut(s) 332
Eco24I GRGCYC 1 cut(s) 479
Eco88I CYCGRG 3 cut(s) 286, 307, 707
EcoRI GAATTC 1 cut(s) 349
EcoRII CCWGG 2 cut(s) 267, 1103
EcoT38I GRGCYC 1 cut(s) 479
FaeI CATG 1 cut(s) 824
FaiI YATR 7 cut(s) 101, 471, 473, 723, 822, 1037, 1074
FatI CATG 1 cut(s) 820
FauI CCCGC 3 cut(s) 126, 250, 455
Fnu4HI GCNGC 4 cut(s) 252, 303, 451, 540
FokI GGATG 2 cut(s) 744, 1126
FriOI GRGCYC 1 cut(s) 479
Fsp4HI GCNGC 4 cut(s) 252, 303, 451, 540
FspBI CTAG 1 cut(s) 743
GlaI GCGC 4 cut(s) 231, 344, 417, 429
GluI GCNGC 4 cut(s) 252, 303, 451, 540
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 8 cut(s) 267, 302, 332, 397, 477, 859, 1115, 1125
HapII CCGG 3 cut(s) 398, 479, 504
HhaI GCGC 4 cut(s) 232, 345, 418, 430
Hin1I GRCGYC 1 cut(s) 389
Hin1II CATG 1 cut(s) 824
Hin6I GCGC 4 cut(s) 230, 343, 416, 428
HinP1I GCGC 4 cut(s) 230, 343, 416, 428
HinfI GANTC 4 cut(s) 152, 495, 824, 982
HpaII CCGG 3 cut(s) 398, 479, 504
HphI GGTGA 2 cut(s) 59, 1039
Hpy188III TCNNGA 7 cut(s) 214, 671, 761, 916, 950, 977, 1090
Hpy99I CGWCG 6 cut(s) 343, 361, 364, 367, 394, 790
HpyAV CCTTC 3 cut(s) 211, 343, 441
HpyCH4III ACNGT 1 cut(s) 616
HpyCH4IV ACGT 1 cut(s) 389
HpyCH4V TGCA 4 cut(s) 628, 692, 771, 1101
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 227, 238, 251, 302, 459, 689
HpyF3I CTNAG 7 cut(s) 233, 579, 603, 752, 775, 861, 951
HpySE526I ACGT 1 cut(s) 389
Hsp92I GRCGYC 1 cut(s) 389
Hsp92II CATG 1 cut(s) 824
HspAI GCGC 4 cut(s) 230, 343, 416, 428
Kzo9I GATC 3 cut(s) 571, 667, 673
LguI GCTCTTC 1 cut(s) 951
LmnI GCTCC 3 cut(s) 27, 146, 500
LweI GCATC 4 cut(s) 766, 780, 1021, 1088
MaeI CTAG 1 cut(s) 743
MaeII ACGT 1 cut(s) 389
MaeIII GTNAC 2 cut(s) 371, 840
MalI GATC 3 cut(s) 573, 669, 675
MboI GATC 3 cut(s) 571, 667, 673
MboII GAAGA 5 cut(s) 65, 70, 345, 848, 938
MflI RGATCY 1 cut(s) 667
MhlI GDGCHC 1 cut(s) 479
MluCI AATT 3 cut(s) 349, 885, 1052
MlyI GAGTC 2 cut(s) 504, 976
MmeI TCCRAC 4 cut(s) 49, 306, 472, 478
MseI TTAA 1 cut(s) 905
MspI CCGG 3 cut(s) 398, 479, 504
MspR9I CCNGG 4 cut(s) 269, 479, 505, 1105
MvaI CCWGG 2 cut(s) 269, 1105
MvnI CGCG 2 cut(s) 343, 428
MwoI GCNNNNNNNGC 7 cut(s) 11, 227, 238, 251, 302, 459, 689
NciI CCSGG 2 cut(s) 479, 505
NdeII GATC 3 cut(s) 571, 667, 673
NlaIII CATG 1 cut(s) 824
NlaIV GGNNCC 5 cut(s) 47, 381, 477, 502, 1116
NmeAIII GCCGAG 1 cut(s) 408
PceI AGGCCT 1 cut(s) 332
PciSI GCTCTTC 1 cut(s) 951
PcsI WCGNNNNNNNCGW 3 cut(s) 344, 353, 362
PfeI GAWTC 2 cut(s) 152, 824
PkrI GCNGC 4 cut(s) 253, 304, 452, 541
PleI GAGTC 2 cut(s) 503, 976
PpsI GAGTC 2 cut(s) 503, 976
Psp6I CCWGG 2 cut(s) 267, 1103
PspGI CCWGG 2 cut(s) 267, 1103
PspN4I GGNNCC 5 cut(s) 47, 381, 477, 502, 1116
PspOMI GGGCCC 1 cut(s) 475
PspPI GGNCC 5 cut(s) 265, 475, 476, 1114, 1124
PstI CTGCAG 1 cut(s) 694
PsuI RGATCY 1 cut(s) 667
RsaI GTAC 2 cut(s) 410, 422
RsaNI GTAC 2 cut(s) 409, 421
SapI GCTCTTC 1 cut(s) 951
SaqAI TTAA 1 cut(s) 905
SatI GCNGC 4 cut(s) 252, 303, 451, 540
Sau3AI GATC 3 cut(s) 571, 667, 673
Sau96I GGNCC 5 cut(s) 265, 475, 476, 1114, 1124
SchI GAGTC 2 cut(s) 504, 976
ScrFI CCNGG 4 cut(s) 269, 479, 505, 1105
SduI GDGCHC 1 cut(s) 479
SfaNI GCATC 4 cut(s) 766, 780, 1021, 1088
SfcI CTRYAG 3 cut(s) 659, 690, 1000
SmlI CTYRAG 6 cut(s) 224, 866, 977, 1010, 1088, 1150
SmoI CTYRAG 6 cut(s) 224, 866, 977, 1010, 1088, 1150
Sse9I AATT 3 cut(s) 349, 885, 1052
SseBI AGGCCT 1 cut(s) 332
SspMI CTAG 1 cut(s) 743
StuI AGGCCT 1 cut(s) 332
StyD4I CCNGG 4 cut(s) 267, 477, 503, 1103
TaaI ACNGT 1 cut(s) 616
TaiI ACGT 1 cut(s) 392
TaqI TCGA 4 cut(s) 347, 365, 392, 509
TaqII GACCGA 1 cut(s) 564
TasI AATT 3 cut(s) 349, 885, 1052
TauI GCSGC 4 cut(s) 254, 305, 453, 542
TfiI GAWTC 2 cut(s) 152, 824
Tru1I TTAA 1 cut(s) 905
Tru9I TTAA 1 cut(s) 905
TscAI CASTG 1 cut(s) 180
TspDTI ATGAA 1 cut(s) 1052
TspRI CASTG 1 cut(s) 180
XapI RAATTY 2 cut(s) 349, 885
XspI CTAG 1 cut(s) 743
ZraI GACGTC 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.