Rh3DG040500

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000368
Physical Location & Seq
Reverse (-)
2654607 .. 2661762
7156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG040500.1

Sequence Viewer

Length: 942 bp
ATGGCTCTCCGTCAACTTTTTATCCAAGGAACATACTTGAGGTTATCGCCTATAAGATTTTTAAAAGCTCTCAGGGTGTTTAGGAGACTCACAATGGCAACCGTACTGTTGTGTTTTTTGTTGATGTGTCATTTGAATCCAGCATTGGCTGCCTCAGGTGGATCGGTCGGCGGAGATTCTTGGTCGGATTCCGATTCCGATTCCGATTCCGATTCCGATTCGCATCTGTATTCCTCGGATTCGGATTCATGGTCGCTCCCATCATCAAGTCCTTCGAAACCGAATTCGCCCGAGGAGCGTAAAGGTCAGGCAGTTTTTTGTTTGTTGATTATGGGGGCAATTGTGGTGTTGGCATTTACATGTTCATCAAGATCTACTGCCACTGTTGTCAAGCTTCAGGTTACCGTTCTCGTGGGTGTGAAAGGAATGCACAAATTTCCGGCCATCAATGATAATAGTGACTTAAACGAAGCCTTGAAAAATCTCAGATCTATTCCCTCACGTGACTTATTATCAGAAGTCAACCCAACACAAGACCCACTTGAGACCATCGCCAATGAAATATTATCCAATGTTCTCAAGGGACTGAACACACCTGCAGTAGAGAACCCACCATTTGATGCTATCTTCAATGAAACATTCTCGAACGCTCTCAAGGGACTCAATACACCTGCAAAAGAGAATCCTAACCCACTTGAGGCTATCTTCAATGAAACATTAGCGAGTGCTCTCAAGGTGACATTGTTAGTTGCGATTGAAGGGAGGCATAAGTTGCCCACCATCAATGGCAGCGCTGACTTGAAGGAAGCATTGAAAAGTCTCGGATCCATTCCTTCAAAGAATATACTGGCAGCAGAAGTGTTATGGACTCCACAGAAAGAAAATGACACACTGTCCGAGGAGGAACTAATAGAAGATTACCCACTTCTGAAGTGTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

313

Amino Acids

33.93

Weight (kDa)

5.14

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 211 - 311 1.6e-25 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 604, 679
Acc36I ACCTGC 2 cut(s) 604, 679
AciI CCGC 1 cut(s) 171
AclWI GGATC 3 cut(s) 169, 819, 832
AcoI YGGCCR 1 cut(s) 441
AcsI RAATTY 2 cut(s) 283, 434
AcuI CTGAAG 1 cut(s) 380
AcvI CACGTG 1 cut(s) 503
AfaI GTAC 1 cut(s) 105
AfeI AGCGCT 1 cut(s) 793
AfiI CCNNNNNNNGG 1 cut(s) 697
AflIII ACRYGT 1 cut(s) 359
AgsI TTSAA 8 cut(s) 136, 478, 631, 709, 758, 802, 814, 837
AhdI GACNNNNNGTC 1 cut(s) 892
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AluBI AGCT 2 cut(s) 68, 394
AluI AGCT 2 cut(s) 68, 394
Alw21I GWGCWC 1 cut(s) 730
Alw26I GTCTC 3 cut(s) 79, 539, 824
AlwI GGATC 3 cut(s) 169, 819, 832
Ama87I CYCGRG 1 cut(s) 290
Aor51HI AGCGCT 1 cut(s) 793
AoxI GGCC 1 cut(s) 441
ApeKI GCWGC 3 cut(s) 149, 789, 851
ApoI RAATTY 2 cut(s) 283, 434
AspLEI GCGC 1 cut(s) 794
AsuHPI GGTGA 1 cut(s) 748
AsuII TTCGAA 1 cut(s) 275
AvaI CYCGRG 1 cut(s) 290
AxyI CCTNAGG 1 cut(s) 154
BamHI GGATCC 1 cut(s) 824
BauI CACGAG 1 cut(s) 410
BbrPI CACGTG 1 cut(s) 503
Bbv12I GWGCWC 1 cut(s) 730
BbvI GCAGC 3 cut(s) 136, 801, 863
BccI CCATC 4 cut(s) 268, 452, 557, 788
BcoDI GTCTC 3 cut(s) 79, 539, 824
BfmI CTRYAG 1 cut(s) 597
BfoI RGCGCY 1 cut(s) 795
BfuAI ACCTGC 2 cut(s) 604, 679
BglII AGATCT 2 cut(s) 371, 488
BisI GCNGC 3 cut(s) 150, 790, 852
BlsI GCNGC 3 cut(s) 151, 791, 853
BmeRI GACNNNNNGTC 1 cut(s) 892
BmeT110I CYCGRG 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 826
BmsI GCATC 2 cut(s) 232, 610
Bpu14I TTCGAA 1 cut(s) 275
BpuEI CTTGAG 6 cut(s) 58, 563, 563, 638, 716, 716
BsaAI YACGTR 1 cut(s) 503
BsaBI GATNNNNATC 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 4 cut(s) 25, 234, 291, 897
Bsc4I CCNNNNNNNGG 1 cut(s) 697
Bse1I ACTGG 1 cut(s) 852
Bse21I CCTNAGG 1 cut(s) 154
Bse8I GATNNNNATC 1 cut(s) 222
BseDI CCNNGG 4 cut(s) 25, 234, 291, 897
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 697
BseMII CTCAG 3 cut(s) 85, 168, 499
BseNI ACTGG 1 cut(s) 852
BseRI GAGGAG 2 cut(s) 308, 914
BseXI GCAGC 3 cut(s) 136, 801, 863
Bsh1285I CGRYCG 1 cut(s) 168
BshFI GGCC 1 cut(s) 443
BsiEI CGRYCG 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 730
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 1 cut(s) 440
BslFI GGGAC 2 cut(s) 597, 672
BslI CCNNNNNNNGG 1 cut(s) 697
BsmAI GTCTC 3 cut(s) 79, 539, 824
BsmFI GGGAC 2 cut(s) 597, 672
BsmI GAATGC 1 cut(s) 432
BsnI GGCC 1 cut(s) 443
Bso31I GGTCTC 1 cut(s) 539
BsoBI CYCGRG 1 cut(s) 290
Bsp119I TTCGAA 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 730
Bsp143I GATC 4 cut(s) 161, 371, 488, 824
BspACI CCGC 1 cut(s) 171
BspANI GGCC 1 cut(s) 443
BspCNI CTCAG 3 cut(s) 84, 167, 498
BspLI GGNNCC 1 cut(s) 826
BspMAI CTGCAG 1 cut(s) 601
BspMI ACCTGC 2 cut(s) 604, 679
BspPI GGATC 3 cut(s) 169, 819, 832
BspT104I TTCGAA 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 539
BsrI ACTGG 1 cut(s) 852
BssECI CCNNGG 4 cut(s) 25, 234, 291, 897
BssMI GATC 4 cut(s) 161, 371, 488, 824
BssSI CACGAG 1 cut(s) 410
BssT1I CCWWGG 1 cut(s) 25
Bst2BI CACGAG 1 cut(s) 410
Bst4CI ACNGT 5 cut(s) 103, 108, 385, 406, 894
BstAPI GCANNNNNTGC 2 cut(s) 149, 772
BstBAI YACGTR 1 cut(s) 503
BstBI TTCGAA 1 cut(s) 275
BstDEI CTNAG 3 cut(s) 71, 154, 485
BstEII GGTNACC 1 cut(s) 400
BstH2I RGCGCY 1 cut(s) 795
BstHHI GCGC 1 cut(s) 794
BstKTI GATC 4 cut(s) 164, 374, 491, 827
BstMAI GTCTC 3 cut(s) 79, 539, 824
BstMBI GATC 4 cut(s) 161, 371, 488, 824
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 3 cut(s) 149, 295, 772
BstNSI RCATGY 1 cut(s) 363
BstPI GGTNACC 1 cut(s) 400
BstSFI CTRYAG 1 cut(s) 597
BstV1I GCAGC 3 cut(s) 136, 801, 863
BstX2I RGATCY 3 cut(s) 371, 488, 824
BstYI RGATCY 3 cut(s) 371, 488, 824
Bsu36I CCTNAGG 1 cut(s) 154
BsuRI GGCC 1 cut(s) 443
BtgZI GCGATG 1 cut(s) 535
BtsIMutI CAGTG 2 cut(s) 381, 890
BveI ACCTGC 2 cut(s) 604, 679
CfoI GCGC 1 cut(s) 794
Csp6I GTAC 1 cut(s) 104
CviAII CATG 2 cut(s) 249, 360
CviJI RGCY 7 cut(s) 5, 68, 149, 394, 443, 473, 701
CviKI_1 RGCY 7 cut(s) 5, 68, 149, 394, 443, 473, 701
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 3 cut(s) 71, 154, 485
DpnI GATC 4 cut(s) 163, 373, 490, 826
DpnII GATC 4 cut(s) 161, 371, 488, 824
DraI TTTAAA 1 cut(s) 63
DriI GACNNNNNGTC 1 cut(s) 892
EaeI YGGCCR 1 cut(s) 441
Eam1105I GACNNNNNGTC 1 cut(s) 892
EciI GGCGGA 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 25
Eco31I GGTCTC 1 cut(s) 539
Eco47III AGCGCT 1 cut(s) 793
Eco57I CTGAAG 1 cut(s) 380
Eco72I CACGTG 1 cut(s) 503
Eco81I CCTNAGG 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 290
Eco91I GGTNACC 1 cut(s) 400
EcoO65I GGTNACC 1 cut(s) 400
EcoRI GAATTC 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 2 cut(s) 252, 363
FaiI YATR 9 cut(s) 34, 53, 250, 332, 361, 768, 845, 865, 940
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FaqI GGGAC 2 cut(s) 597, 672
FatI CATG 2 cut(s) 248, 359
Fnu4HI GCNGC 3 cut(s) 150, 790, 852
Fsp4HI GCNGC 3 cut(s) 150, 790, 852
GlaI GCGC 1 cut(s) 793
GluI GCNGC 3 cut(s) 150, 790, 852
HaeII RGCGCY 1 cut(s) 795
HaeIII GGCC 1 cut(s) 443
HapII CCGG 1 cut(s) 440
HhaI GCGC 1 cut(s) 794
Hin1II CATG 2 cut(s) 252, 363
Hin6I GCGC 1 cut(s) 792
HinP1I GCGC 1 cut(s) 792
HincII GTYRAC 2 cut(s) 14, 523
HindII GTYRAC 2 cut(s) 14, 523
HindIII AAGCTT 1 cut(s) 392
HpaII CCGG 1 cut(s) 440
HphI GGTGA 1 cut(s) 748
Hpy166II GTNNAC 2 cut(s) 14, 523
Hpy188III TCNNGA 2 cut(s) 369, 643
Hpy8I GTNNAC 2 cut(s) 14, 523
HpyAV CCTTC 4 cut(s) 282, 752, 796, 843
HpyCH4III ACNGT 5 cut(s) 103, 108, 385, 406, 894
HpyCH4IV ACGT 1 cut(s) 502
HpyCH4V TGCA 3 cut(s) 430, 599, 674
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 295, 772
HpyF3I CTNAG 3 cut(s) 71, 154, 485
HpySE526I ACGT 1 cut(s) 502
Hsp92II CATG 2 cut(s) 252, 363
HspAI GCGC 1 cut(s) 792
Kzo9I GATC 4 cut(s) 161, 371, 488, 824
LmnI GCTCC 2 cut(s) 261, 295
LpnPI CCDG 9 cut(s) 58, 141, 153, 293, 383, 453, 609, 684, 833
Lsp1109I GCAGC 3 cut(s) 136, 801, 863
LweI GCATC 2 cut(s) 232, 610
MaeII ACGT 1 cut(s) 502
MaeIII GTNAC 4 cut(s) 400, 458, 503, 736
MalI GATC 4 cut(s) 163, 373, 490, 826
MboI GATC 4 cut(s) 161, 371, 488, 824
MboII GAAGA 3 cut(s) 619, 697, 926
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 3 cut(s) 371, 488, 824
MhlI GDGCHC 1 cut(s) 730
MluCI AATT 3 cut(s) 283, 339, 434
MlyI GAGTC 3 cut(s) 81, 654, 862
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 9 cut(s) 33, 163, 244, 286, 508, 691, 756, 892, 895
MseI TTAA 2 cut(s) 62, 464
MslI CAYNNNNRTG 1 cut(s) 358
MspI CCGG 1 cut(s) 440
MunI CAATTG 1 cut(s) 339
Mva1269I GAATGC 1 cut(s) 432
MwoI GCNNNNNNNGC 3 cut(s) 149, 295, 772
NdeII GATC 4 cut(s) 161, 371, 488, 824
NlaIII CATG 2 cut(s) 252, 363
NlaIV GGNNCC 1 cut(s) 826
NmuCI GTSAC 3 cut(s) 458, 503, 736
NspI RCATGY 1 cut(s) 363
NspV TTCGAA 1 cut(s) 275
PaqCI CACCTGC 2 cut(s) 604, 679
PciI ACATGT 1 cut(s) 359
PctI GAATGC 1 cut(s) 432
PkrI GCNGC 3 cut(s) 151, 791, 853
PleI GAGTC 3 cut(s) 81, 654, 862
PmaCI CACGTG 1 cut(s) 503
PmlI CACGTG 1 cut(s) 503
PpsI GAGTC 3 cut(s) 81, 654, 862
Ppu21I YACGTR 1 cut(s) 503
PscI ACATGT 1 cut(s) 359
PspCI CACGTG 1 cut(s) 503
PspEI GGTNACC 1 cut(s) 400
PspN4I GGNNCC 1 cut(s) 826
PstI CTGCAG 1 cut(s) 601
PsuI RGATCY 3 cut(s) 371, 488, 824
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 358
SaqAI TTAA 2 cut(s) 62, 464
SatI GCNGC 3 cut(s) 150, 790, 852
Sau3AI GATC 4 cut(s) 161, 371, 488, 824
SchI GAGTC 3 cut(s) 81, 654, 862
SduI GDGCHC 1 cut(s) 730
SfaNI GCATC 2 cut(s) 232, 610
SfcI CTRYAG 1 cut(s) 597
SfuI TTCGAA 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 358
SmlI CTYRAG 6 cut(s) 37, 542, 578, 653, 695, 731
SmoI CTYRAG 6 cut(s) 37, 542, 578, 653, 695, 731
Sse9I AATT 3 cut(s) 283, 339, 434
SsiI CCGC 1 cut(s) 171
SspI AATATT 1 cut(s) 564
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 5 cut(s) 103, 108, 385, 406, 894
TaiI ACGT 1 cut(s) 505
TaqI TCGA 2 cut(s) 275, 644
TaqII GACCGA 1 cut(s) 154
TasI AATT 3 cut(s) 283, 339, 434
Tru1I TTAA 2 cut(s) 62, 464
Tru9I TTAA 2 cut(s) 62, 464
TscAI CASTG 2 cut(s) 388, 897
TseFI GTSAC 3 cut(s) 458, 503, 736
TseI GCWGC 3 cut(s) 149, 789, 851
Tsp45I GTSAC 3 cut(s) 458, 503, 736
TspDTI ATGAA 5 cut(s) 237, 354, 573, 648, 726
TspRI CASTG 2 cut(s) 388, 897
XapI RAATTY 2 cut(s) 283, 434
XceI RCATGY 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.