Rw3G003040

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000368
Physical Location & Seq
Reverse (-)
2683753 .. 2686340
2588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G003040.1

Sequence Viewer

Length: 939 bp
ATGGCGTTGAGAAATCCGGCCACCGTCGCCGCGTTATTGCTCGCTCTGCTATTGATTTCCGACCCCAATTTCGCGTCCGCCGCTACGGGTGGGCGGTCCGGCGGAAGCCTGTTCCCCTCCGGCGGAGATTCTTCTTCGTCTTCGTCTTCGTCTTCATCGTGGTCGGGGTCTTCGGGTGCATCGGACTCTTGGTCGTGGCACCACTCGCCGTCATCGTCGTCTTCCTTGTCGGACGGTGGATTCTACGTCTTCTTGGTTTTAATGGCGGTTGTGGTTGGTGTGGCGGTCATCTGCCGCTGTGCTGGTGTTGGGAAAACAAGCGTCGTCAAGCTTCAGGTTGGTCTGGTGGGCAAGGCGCGATCACTTCAAAAGGATCTTAATCGACTTACTGAAACTACAGATATGTCTACGTCTACGGGTTTGAGCCATCTTTTGACAGGGGCATCAACATCTTTGCTTCGCAATCTTGATTATTGCATCTCAAGTTATTCATCTGTTACTCGAAAGTCCGAGACAGAAGATGCAGAGCAATGCTTCAAACAACTTTCTATGGAAGAAGCAGCTAAATTTGATGAAGTGACGCTTGCCAATGTGAACAACTTTATAGTGCGTTCAACAAGCCAGTCACCAAATGAAGGCCACAAAGAATATATAGTGGTTACAATTTTGGTGGCTACTCAAGGTGCACCAAAGTTGCCCAGCATCAATGGCCCTGGTGACTTGAAGAAAGCATTACAGAGTCTTGGATCCATTCCCTCGAACCAAATACTGGCGGTTGAGGTCTTGTGGACTCCTCAACAAGAAAATGATGCTTTGACTGAGAAGGAACTACTTAAAGATTACCCGCAGTTGAGGGGCTTTTATGATGGAGGGTCACTTGAAGAAGGGCCATATGACGATTCCCACCCGTTCTTAGGGGTTACTGTAGTCAAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

312

Amino Acids

32.86

Weight (kDa)

5.27

Isoelectric Point (pI)

54.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 106 - 285 6.5e-61 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 198
AccB7I CCANNNNNTGG 1 cut(s) 769
AccI GTMKAC 2 cut(s) 407, 413
AccII CGCG 3 cut(s) 32, 74, 358
AclWI GGATC 3 cut(s) 381, 741, 754
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 1 cut(s) 566
AcuI CTGAAG 1 cut(s) 317
AfiI CCNNNNNNNGG 4 cut(s) 122, 635, 769, 914
AgsI TTSAA 5 cut(s) 368, 538, 615, 724, 881
AhdI GACNNNNNGTC 1 cut(s) 190
AjnI CCWGG 1 cut(s) 712
AluBI AGCT 3 cut(s) 331, 563, 936
AluI AGCT 3 cut(s) 331, 563, 936
Alw21I GWGCWC 1 cut(s) 688
Alw26I GTCTC 1 cut(s) 506
Alw44I GTGCAC 1 cut(s) 684
AlwI GGATC 3 cut(s) 381, 741, 754
AoxI GGCC 4 cut(s) 18, 637, 709, 887
ApaLI GTGCAC 1 cut(s) 684
ApeKI GCWGC 1 cut(s) 560
ApoI RAATTY 1 cut(s) 566
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 3 cut(s) 96, 710, 887
AsuHPI GGTGA 2 cut(s) 618, 728
AvaII GGWCC 1 cut(s) 96
BaeGI GKGCMC 1 cut(s) 688
BamHI GGATCC 1 cut(s) 746
BanI GGYRCC 1 cut(s) 198
BbsI GAAGAC 6 cut(s) 132, 138, 144, 162, 213, 241
Bbv12I GWGCWC 1 cut(s) 688
BbvI GCAGC 1 cut(s) 572
BccI CCATC 2 cut(s) 435, 860
BceAI ACGGC 1 cut(s) 193
BciT130I CCWGG 1 cut(s) 714
BcoDI GTCTC 1 cut(s) 506
BfaI CTAG 1 cut(s) 937
BfmI CTRYAG 2 cut(s) 396, 924
BisI GCNGC 4 cut(s) 30, 81, 295, 561
BlsI GCNGC 4 cut(s) 31, 82, 296, 562
Bme1390I CCNGG 1 cut(s) 714
Bme18I GGWCC 1 cut(s) 96
BmeRI GACNNNNNGTC 1 cut(s) 190
BmgT120I GGNCC 3 cut(s) 96, 710, 887
BmiI GGNNCC 2 cut(s) 200, 748
BmrFI CCNGG 1 cut(s) 714
BmsI GCATC 6 cut(s) 188, 452, 486, 511, 711, 799
BpiI GAAGAC 6 cut(s) 132, 138, 144, 162, 213, 241
BpuEI CTTGAG 2 cut(s) 466, 663
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 712
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 635, 769, 914
Bse1I ACTGG 2 cut(s) 622, 774
Bse3DI GCAATG 1 cut(s) 536
Bse8I GATNNNNATC 1 cut(s) 378
BseBI CCWGG 1 cut(s) 714
BseDI CCNNGG 1 cut(s) 712
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 4 cut(s) 122, 635, 769, 914
BseMI GCAATG 1 cut(s) 536
BseMII CTCAG 1 cut(s) 810
BseNI ACTGG 2 cut(s) 622, 774
BseRI GAGGAG 1 cut(s) 783
BseSI GKGCMC 1 cut(s) 688
BseXI GCAGC 1 cut(s) 572
BseYI CCCAGC 1 cut(s) 698
Bsh1236I CGCG 3 cut(s) 32, 74, 358
BshFI GGCC 4 cut(s) 20, 639, 711, 889
BshNI GGYRCC 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 688
BsiSI CCGG 3 cut(s) 17, 99, 120
BslI CCNNNNNNNGG 4 cut(s) 122, 635, 769, 914
BsmAI GTCTC 1 cut(s) 506
BsnI GGCC 4 cut(s) 20, 639, 711, 889
Bsp1286I GDGCHC 1 cut(s) 688
Bsp143I GATC 3 cut(s) 359, 373, 746
BspANI GGCC 4 cut(s) 20, 639, 711, 889
BspCNI CTCAG 1 cut(s) 811
BspFNI CGCG 3 cut(s) 32, 74, 358
BspLI GGNNCC 2 cut(s) 200, 748
BspPI GGATC 3 cut(s) 381, 741, 754
BspT107I GGYRCC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 536
BsrI ACTGG 2 cut(s) 622, 774
BssECI CCNNGG 1 cut(s) 712
BssMI GATC 3 cut(s) 359, 373, 746
Bst2UI CCWGG 1 cut(s) 714
Bst4CI ACNGT 3 cut(s) 25, 236, 925
BstC8I GCNNGC 2 cut(s) 42, 585
BstDEI CTNAG 2 cut(s) 819, 913
BstFNI CGCG 3 cut(s) 32, 74, 358
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 3 cut(s) 362, 376, 749
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 3 cut(s) 359, 373, 746
BstMWI GCNNNNNNNGC 5 cut(s) 26, 46, 80, 205, 708
BstNI CCWGG 1 cut(s) 714
BstSCI CCNGG 1 cut(s) 712
BstSFI CTRYAG 2 cut(s) 396, 924
BstSLI GKGCMC 1 cut(s) 688
BstUI CGCG 3 cut(s) 32, 74, 358
BstV1I GCAGC 1 cut(s) 572
BstV2I GAAGAC 6 cut(s) 132, 138, 144, 162, 213, 241
BstX2I RGATCY 2 cut(s) 373, 746
BstYI RGATCY 2 cut(s) 373, 746
BsuRI GGCC 4 cut(s) 20, 639, 711, 889
Cac8I GCNNGC 2 cut(s) 42, 585
CfoI GCGC 1 cut(s) 358
Cfr13I GGNCC 3 cut(s) 96, 710, 887
CpoI CGGWCCG 1 cut(s) 96
CseI GACGC 3 cut(s) 63, 310, 589
CspCI CAANNNNNGTGG 2 cut(s) 651, 686
CspI CGGWCCG 1 cut(s) 96
DdeI CTNAG 2 cut(s) 819, 913
DpnI GATC 3 cut(s) 361, 375, 748
DpnII GATC 3 cut(s) 359, 373, 746
DriI GACNNNNNGTC 1 cut(s) 190
EaeI YGGCCR 1 cut(s) 18
Eam1105I GACNNNNNGTC 1 cut(s) 190
EciI GGCGGA 3 cut(s) 67, 117, 138
Eco47I GGWCC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 712
FaiI YATR 8 cut(s) 404, 551, 605, 651, 653, 864, 892, 894
FalI AAGNNNNNCTT 2 cut(s) 567, 599
FauI CCCGC 1 cut(s) 852
FauNDI CATATG 1 cut(s) 892
FblI GTMKAC 2 cut(s) 407, 413
Fnu4HI GCNGC 4 cut(s) 30, 81, 295, 561
Fsp4HI GCNGC 4 cut(s) 30, 81, 295, 561
FspBI CTAG 1 cut(s) 937
GlaI GCGC 1 cut(s) 357
GluI GCNGC 4 cut(s) 30, 81, 295, 561
GsaI CCCAGC 1 cut(s) 702
HaeIII GGCC 4 cut(s) 20, 639, 711, 889
HapII CCGG 3 cut(s) 17, 99, 120
HgaI GACGC 3 cut(s) 63, 310, 589
HhaI GCGC 1 cut(s) 358
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 6 cut(s) 128, 185, 240, 739, 790, 899
HpaII CCGG 3 cut(s) 17, 99, 120
HphI GGTGA 2 cut(s) 618, 728
Hpy166II GTNNAC 5 cut(s) 408, 414, 595, 686, 789
Hpy188I TCNGA 4 cut(s) 61, 184, 232, 511
Hpy188III TCNNGA 2 cut(s) 467, 931
Hpy8I GTNNAC 5 cut(s) 408, 414, 595, 686, 789
Hpy99I CGWCG 3 cut(s) 29, 220, 326
HpyAV CCTTC 3 cut(s) 629, 817, 878
HpyCH4III ACNGT 3 cut(s) 25, 236, 925
HpyCH4IV ACGT 2 cut(s) 246, 410
HpyCH4V TGCA 4 cut(s) 179, 477, 524, 686
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 46, 80, 205, 708
HpyF3I CTNAG 2 cut(s) 819, 913
HpySE526I ACGT 2 cut(s) 246, 410
HspAI GCGC 1 cut(s) 356
Kzo9I GATC 3 cut(s) 359, 373, 746
Lsp1109I GCAGC 1 cut(s) 572
LweI GCATC 6 cut(s) 188, 452, 486, 511, 711, 799
MaeI CTAG 1 cut(s) 937
MaeII ACGT 2 cut(s) 246, 410
MaeIII GTNAC 7 cut(s) 496, 577, 624, 658, 716, 873, 919
MalI GATC 3 cut(s) 361, 375, 748
MboI GATC 3 cut(s) 359, 373, 746
MflI RGATCY 2 cut(s) 373, 746
MhlI GDGCHC 1 cut(s) 688
MluCI AATT 3 cut(s) 67, 566, 663
MlyI GAGTC 3 cut(s) 179, 748, 784
MmeI TCCRAC 2 cut(s) 84, 210
MnlI CCTC 6 cut(s) 127, 766, 772, 804, 846, 863
MseI TTAA 3 cut(s) 260, 378, 834
MspA1I CMGCKG 1 cut(s) 297
MspI CCGG 3 cut(s) 17, 99, 120
MspR9I CCNGG 1 cut(s) 714
MvaI CCWGG 1 cut(s) 714
MvnI CGCG 3 cut(s) 32, 74, 358
MwoI GCNNNNNNNGC 5 cut(s) 26, 46, 80, 205, 708
NdeI CATATG 1 cut(s) 892
NdeII GATC 3 cut(s) 359, 373, 746
NlaIV GGNNCC 2 cut(s) 200, 748
NmuCI GTSAC 4 cut(s) 577, 624, 716, 873
PcsI WCGNNNNNNNCGW 2 cut(s) 155, 212
PfeI GAWTC 3 cut(s) 128, 240, 899
PflMI CCANNNNNTGG 1 cut(s) 769
PkrI GCNGC 4 cut(s) 31, 82, 296, 562
PleI GAGTC 3 cut(s) 179, 747, 784
PpsI GAGTC 3 cut(s) 179, 747, 784
Psp6I CCWGG 1 cut(s) 712
PspFI CCCAGC 1 cut(s) 698
PspGI CCWGG 1 cut(s) 712
PspN4I GGNNCC 2 cut(s) 200, 748
PspPI GGNCC 3 cut(s) 96, 710, 887
PsuI RGATCY 2 cut(s) 373, 746
Rsr2I CGGWCCG 1 cut(s) 96
RsrII CGGWCCG 1 cut(s) 96
SaqAI TTAA 3 cut(s) 260, 378, 834
SatI GCNGC 4 cut(s) 30, 81, 295, 561
Sau3AI GATC 3 cut(s) 359, 373, 746
Sau96I GGNCC 3 cut(s) 96, 710, 887
SchI GAGTC 3 cut(s) 179, 748, 784
ScrFI CCNGG 1 cut(s) 714
SduI GDGCHC 1 cut(s) 688
SetI ASST 8 cut(s) 249, 333, 339, 413, 565, 685, 783, 938
SfaNI GCATC 6 cut(s) 188, 452, 486, 511, 711, 799
SfcI CTRYAG 2 cut(s) 396, 924
SinI GGWCC 1 cut(s) 96
SmlI CTYRAG 2 cut(s) 481, 678
SmoI CTYRAG 2 cut(s) 481, 678
Sse9I AATT 3 cut(s) 67, 566, 663
SspMI CTAG 1 cut(s) 937
StyD4I CCNGG 1 cut(s) 712
TaaI ACNGT 3 cut(s) 25, 236, 925
TaiI ACGT 2 cut(s) 249, 413
TaqI TCGA 3 cut(s) 382, 502, 758
TasI AATT 3 cut(s) 67, 566, 663
TauI GCSGC 3 cut(s) 32, 83, 297
TfiI GAWTC 3 cut(s) 128, 240, 899
Tru1I TTAA 3 cut(s) 260, 378, 834
Tru9I TTAA 3 cut(s) 260, 378, 834
TseFI GTSAC 4 cut(s) 577, 624, 716, 873
TseI GCWGC 1 cut(s) 560
Tsp45I GTSAC 4 cut(s) 577, 624, 716, 873
TspDTI ATGAA 4 cut(s) 144, 480, 588, 648
Van91I CCANNNNNTGG 1 cut(s) 769
VneI GTGCAC 1 cut(s) 684
VpaK11BI GGWCC 1 cut(s) 96
XapI RAATTY 1 cut(s) 566
XmiI GTMKAC 2 cut(s) 407, 413
XspI CTAG 1 cut(s) 937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.