RchiOBHm_Chr3g0452011

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000368
Physical Location & Seq
Reverse (-)
2837462 .. 2839900
2439 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41922

Sequence Viewer

Length: 978 bp
ATGGCTCTCCGTCAACTTTTTATCCAAGGAACATACTTGAGGTTATCGCCTATAAGATTTTTAAAAGCTCTCAGGGTGTTTAGGAGACTCACAATGGCAGCCGTACTGTTGTGTTTTTTGTTGATGTATCATTTGAATCCAACATTGGCTGCCTCAGGTGGATCGGTCGGCGGAGATTCTTGGTCGGATTCCGATTCCGATTCCGATTCGGATTCGCATCTGTATTCCTCGGATTCGGATTCATGGTCGCACCCATCATCAAGTCCTTCGAAAACGAATTCGCCCGAGGAGCGTAAAGGTCAGGCAGTTTTTTGTTTGTTGATTATGGGGGCAATTGTGGTGTTGGCATTTACATGTTCATCAAGATCTACTGCCACTGTTGTCAAGCTTCAGGTTGGTCTGTTGAGCACAGCGCGAACACTCCTAAAGGATCTTGATCAGATAGCTGAAACTGCAGATACGTCTACTCGCAAGGATTTGAGCCGTGTTTTGACAGAGGCAACAGCAGCTTTGCTTCGCCATCCTCATCATTGTATCTCAGGCTATTCTTCTGTGGCTCCCAAAGAAACTGTGAAGGATGCACAAAAATGCTTTAATCAAGTTTCATTGGAAGAGAGGGCTAAATTTGAAGAAGAGACACTTGTTAATGTGAACAACATAAAAAGGAAAAGTACAACAAAGAGACCTAAGGGATTGCACAATCAATATATAGTGGTATGTTTTGTATTTGATTTAATCCTTGAGGCTAGGGATATCTTATTGGTATTTGCAGTTACCATTCTCGTGGGTGTGAAAGGAATGCACAAATTTCCGGGCATCAATGATAATAGTGACTTAAACGAAGCCTTGCAAAATCTCAGATCCATTCCCTCACGTGACTTATTAGCAGTACGAGTGTTATGGACTCCTCAACAGGAAAATGATACTTTGTCGGAGCAAGAACTACTTAAAGATTACCCCCTTCTGAAACAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

325

Amino Acids

36.16

Weight (kDa)

8.17

Isoelectric Point (pI)

51.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 125 - 324 1.1e-58 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 464
AccII CGCG 1 cut(s) 415
AciI CCGC 1 cut(s) 171
AclWI GGATC 3 cut(s) 169, 438, 855
AcsI RAATTY 3 cut(s) 277, 623, 806
AcuI CTGAAG 1 cut(s) 374
AcvI CACGTG 1 cut(s) 875
AfaI GTAC 3 cut(s) 105, 673, 891
AflIII ACRYGT 1 cut(s) 353
AgsI TTSAA 2 cut(s) 136, 629
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AluBI AGCT 4 cut(s) 68, 388, 446, 509
AluI AGCT 4 cut(s) 68, 388, 446, 509
Alw21I GWGCWC 1 cut(s) 410
Alw26I GTCTC 3 cut(s) 79, 629, 676
AlwI GGATC 3 cut(s) 169, 438, 855
Ama87I CYCGRG 1 cut(s) 284
ApeKI GCWGC 3 cut(s) 98, 149, 506
ApoI RAATTY 3 cut(s) 277, 623, 806
AspLEI GCGC 1 cut(s) 415
AsuC2I CCSGG 1 cut(s) 813
AsuII TTCGAA 1 cut(s) 269
AvaI CYCGRG 1 cut(s) 284
AxyI CCTNAGG 2 cut(s) 154, 687
BauI CACGAG 1 cut(s) 782
BbrPI CACGTG 1 cut(s) 875
Bbv12I GWGCWC 1 cut(s) 410
BbvI GCAGC 3 cut(s) 110, 136, 518
BccI CCATC 2 cut(s) 262, 528
BceAI ACGGC 2 cut(s) 86, 468
BclI TGATCA 1 cut(s) 436
BcnI CCSGG 1 cut(s) 813
BcoDI GTCTC 3 cut(s) 79, 629, 676
BfaI CTAG 1 cut(s) 747
BfmI CTRYAG 1 cut(s) 453
BglII AGATCT 1 cut(s) 365
BisI GCNGC 3 cut(s) 99, 150, 507
BlsI GCNGC 3 cut(s) 100, 151, 508
Bme1390I CCNGG 1 cut(s) 813
BmeT110I CYCGRG 1 cut(s) 284
BmiI GGNNCC 1 cut(s) 558
BmrFI CCNGG 1 cut(s) 813
BmsI GCATC 3 cut(s) 226, 568, 825
Bpu14I TTCGAA 1 cut(s) 269
BpuEI CTTGAG 2 cut(s) 58, 761
BpuMI CCSGG 1 cut(s) 813
BsaAI YACGTR 1 cut(s) 875
BsaBI GATNNNNATC 2 cut(s) 216, 435
BsaI GGTCTC 1 cut(s) 676
BsaJI CCNNGG 3 cut(s) 25, 228, 285
Bse21I CCTNAGG 2 cut(s) 154, 687
Bse8I GATNNNNATC 2 cut(s) 216, 435
BseDI CCNNGG 3 cut(s) 25, 228, 285
BseGI GGATG 2 cut(s) 520, 583
BseJI GATNNNNATC 2 cut(s) 216, 435
BseMII CTCAG 4 cut(s) 85, 168, 552, 871
BseRI GAGGAG 2 cut(s) 302, 897
BseXI GCAGC 3 cut(s) 110, 136, 518
Bsh1236I CGCG 1 cut(s) 415
Bsh1285I CGRYCG 1 cut(s) 168
BsiEI CGRYCG 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 410
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 1 cut(s) 812
BsmAI GTCTC 3 cut(s) 79, 629, 676
BsmI GAATGC 1 cut(s) 804
Bso31I GGTCTC 1 cut(s) 676
BsoBI CYCGRG 1 cut(s) 284
Bsp119I TTCGAA 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 410
Bsp143I GATC 5 cut(s) 161, 365, 430, 436, 860
BspACI CCGC 1 cut(s) 171
BspCNI CTCAG 4 cut(s) 84, 167, 551, 870
BspFNI CGCG 1 cut(s) 415
BspLI GGNNCC 1 cut(s) 558
BspMAI CTGCAG 1 cut(s) 457
BspPI GGATC 3 cut(s) 169, 438, 855
BspT104I TTCGAA 1 cut(s) 269
BspTNI GGTCTC 1 cut(s) 676
BssECI CCNNGG 3 cut(s) 25, 228, 285
BssMI GATC 5 cut(s) 161, 365, 430, 436, 860
BssSI CACGAG 1 cut(s) 782
BssT1I CCWWGG 1 cut(s) 25
Bst2BI CACGAG 1 cut(s) 782
Bst4CI ACNGT 3 cut(s) 108, 379, 571
Bst6I CTCTTC 2 cut(s) 606, 627
BstBAI YACGTR 1 cut(s) 875
BstBI TTCGAA 1 cut(s) 269
BstDEI CTNAG 5 cut(s) 71, 154, 538, 687, 857
BstF5I GGATG 2 cut(s) 520, 583
BstFNI CGCG 1 cut(s) 415
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 5 cut(s) 164, 368, 433, 439, 863
BstMAI GTCTC 3 cut(s) 79, 629, 676
BstMBI GATC 5 cut(s) 161, 365, 430, 436, 860
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 3 cut(s) 289, 452, 506
BstNSI RCATGY 1 cut(s) 357
BstSCI CCNGG 1 cut(s) 811
BstSFI CTRYAG 1 cut(s) 453
BstUI CGCG 1 cut(s) 415
BstV1I GCAGC 3 cut(s) 110, 136, 518
BstX2I RGATCY 3 cut(s) 365, 430, 860
BstXI CCANNNNNNTGG 1 cut(s) 784
BstYI RGATCY 3 cut(s) 365, 430, 860
Bsu36I CCTNAGG 2 cut(s) 154, 687
BtsCI GGATG 2 cut(s) 520, 583
BtsIMutI CAGTG 1 cut(s) 375
CfoI GCGC 1 cut(s) 415
Csp6I GTAC 3 cut(s) 104, 672, 890
CviAII CATG 2 cut(s) 243, 354
CviQI GTAC 3 cut(s) 104, 672, 890
DdeI CTNAG 5 cut(s) 71, 154, 538, 687, 857
DpnI GATC 5 cut(s) 163, 367, 432, 438, 862
DpnII GATC 5 cut(s) 161, 365, 430, 436, 860
DraI TTTAAA 1 cut(s) 63
Eam1104I CTCTTC 2 cut(s) 606, 627
EarI CTCTTC 2 cut(s) 606, 627
EciI GGCGGA 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 25
Eco31I GGTCTC 1 cut(s) 676
Eco32I GATATC 1 cut(s) 754
Eco57I CTGAAG 1 cut(s) 374
Eco72I CACGTG 1 cut(s) 875
Eco81I CCTNAGG 2 cut(s) 154, 687
Eco88I CYCGRG 1 cut(s) 284
EcoRI GAATTC 1 cut(s) 277
EcoRV GATATC 1 cut(s) 754
EcoT14I CCWWGG 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 2 cut(s) 246, 357
FalI AAGNNNNNCTT 4 cut(s) 624, 656, 930, 962
FatI CATG 2 cut(s) 242, 353
FbaI TGATCA 1 cut(s) 436
FblI GTMKAC 1 cut(s) 464
Fnu4HI GCNGC 3 cut(s) 99, 150, 507
FokI GGATG 2 cut(s) 507, 590
Fsp4HI GCNGC 3 cut(s) 99, 150, 507
FspBI CTAG 1 cut(s) 747
GlaI GCGC 1 cut(s) 414
GluI GCNGC 3 cut(s) 99, 150, 507
HapII CCGG 1 cut(s) 812
HhaI GCGC 1 cut(s) 415
Hin1II CATG 2 cut(s) 246, 357
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HincII GTYRAC 1 cut(s) 14
HindII GTYRAC 1 cut(s) 14
HindIII AAGCTT 1 cut(s) 386
HpaII CCGG 1 cut(s) 812
Hpy166II GTNNAC 3 cut(s) 14, 465, 652
Hpy188III TCNNGA 2 cut(s) 363, 434
Hpy8I GTNNAC 3 cut(s) 14, 465, 652
HpyAV CCTTC 3 cut(s) 276, 568, 971
HpyCH4III ACNGT 3 cut(s) 108, 379, 571
HpyCH4IV ACGT 2 cut(s) 461, 874
HpyCH4V TGCA 6 cut(s) 455, 581, 697, 770, 802, 850
HpyF10VI GCNNNNNNNGC 3 cut(s) 289, 452, 506
HpyF3I CTNAG 5 cut(s) 71, 154, 538, 687, 857
HpySE526I ACGT 2 cut(s) 461, 874
Hsp92II CATG 2 cut(s) 246, 357
HspAI GCGC 1 cut(s) 413
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 5 cut(s) 161, 365, 430, 436, 860
LmnI GCTCC 3 cut(s) 289, 562, 934
LpnPI CCDG 7 cut(s) 58, 141, 287, 377, 525, 825, 899
Lsp1109I GCAGC 3 cut(s) 110, 136, 518
LweI GCATC 3 cut(s) 226, 568, 825
MaeI CTAG 1 cut(s) 747
MaeII ACGT 2 cut(s) 461, 874
MaeIII GTNAC 3 cut(s) 772, 830, 875
MalI GATC 5 cut(s) 163, 367, 432, 438, 862
MboI GATC 5 cut(s) 161, 365, 430, 436, 860
MboII GAAGA 4 cut(s) 540, 623, 641, 644
MfeI CAATTG 1 cut(s) 333
MflI RGATCY 3 cut(s) 365, 430, 860
MhlI GDGCHC 1 cut(s) 410
MluCI AATT 5 cut(s) 277, 333, 623, 806, 971
MlyI GAGTC 2 cut(s) 81, 898
MmeI TCCRAC 3 cut(s) 164, 165, 912
MseI TTAA 6 cut(s) 62, 594, 645, 734, 836, 948
MslI CAYNNNNRTG 3 cut(s) 352, 586, 782
MspI CCGG 1 cut(s) 812
MspR9I CCNGG 1 cut(s) 813
MunI CAATTG 1 cut(s) 333
Mva1269I GAATGC 1 cut(s) 804
MvnI CGCG 1 cut(s) 415
MwoI GCNNNNNNNGC 3 cut(s) 289, 452, 506
NciI CCSGG 1 cut(s) 813
NdeII GATC 5 cut(s) 161, 365, 430, 436, 860
NlaIII CATG 2 cut(s) 246, 357
NlaIV GGNNCC 1 cut(s) 558
NmuCI GTSAC 2 cut(s) 830, 875
NspI RCATGY 1 cut(s) 357
NspV TTCGAA 1 cut(s) 269
PciI ACATGT 1 cut(s) 353
PctI GAATGC 1 cut(s) 804
PfeI GAWTC 9 cut(s) 136, 176, 188, 194, 200, 206, 212, 233, 239
PkrI GCNGC 3 cut(s) 100, 151, 508
PleI GAGTC 2 cut(s) 81, 898
PmaCI CACGTG 1 cut(s) 875
PmlI CACGTG 1 cut(s) 875
PpsI GAGTC 2 cut(s) 81, 898
Ppu21I YACGTR 1 cut(s) 875
PscI ACATGT 1 cut(s) 353
PspCI CACGTG 1 cut(s) 875
PspN4I GGNNCC 1 cut(s) 558
PstI CTGCAG 1 cut(s) 457
PsuI RGATCY 3 cut(s) 365, 430, 860
RsaI GTAC 3 cut(s) 105, 673, 891
RsaNI GTAC 3 cut(s) 104, 672, 890
RseI CAYNNNNRTG 3 cut(s) 352, 586, 782
SaqAI TTAA 6 cut(s) 62, 594, 645, 734, 836, 948
SatI GCNGC 3 cut(s) 99, 150, 507
Sau3AI GATC 5 cut(s) 161, 365, 430, 436, 860
SchI GAGTC 2 cut(s) 81, 898
ScrFI CCNGG 1 cut(s) 813
SduI GDGCHC 1 cut(s) 410
SfaNI GCATC 3 cut(s) 226, 568, 825
SfcI CTRYAG 1 cut(s) 453
SfuI TTCGAA 1 cut(s) 269
SmiMI CAYNNNNRTG 3 cut(s) 352, 586, 782
SmlI CTYRAG 2 cut(s) 37, 740
SmoI CTYRAG 2 cut(s) 37, 740
Sse9I AATT 5 cut(s) 277, 333, 623, 806, 971
SsiI CCGC 1 cut(s) 171
SspMI CTAG 1 cut(s) 747
StyD4I CCNGG 1 cut(s) 811
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 3 cut(s) 108, 379, 571
TaiI ACGT 2 cut(s) 464, 877
TaqI TCGA 1 cut(s) 269
TaqII GACCGA 1 cut(s) 154
TasI AATT 5 cut(s) 277, 333, 623, 806, 971
TatI WGTACW 1 cut(s) 671
TfiI GAWTC 9 cut(s) 136, 176, 188, 194, 200, 206, 212, 233, 239
Tru1I TTAA 6 cut(s) 62, 594, 645, 734, 836, 948
Tru9I TTAA 6 cut(s) 62, 594, 645, 734, 836, 948
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 2 cut(s) 830, 875
TseI GCWGC 3 cut(s) 98, 149, 506
Tsp45I GTSAC 2 cut(s) 830, 875
TspDTI ATGAA 3 cut(s) 231, 348, 594
TspRI CASTG 1 cut(s) 382
XapI RAATTY 3 cut(s) 277, 623, 806
XceI RCATGY 1 cut(s) 357
XmiI GTMKAC 1 cut(s) 464
XspI CTAG 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.