RchiOBHm_Chr3g0452041

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000368
Physical Location & Seq
Reverse (-)
2862267 .. 2865362
3096 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41925

Sequence Viewer

Length: 975 bp
ATGCCATTGAGAAATCCGGCCACCGTCGCCGCCGTGTTGTTCTTGTTCCTCTTGTTGATTCCGAGCTTCGCGTCCGCCGCCACCGGCGGCCACGTCGGCGGAAGCTTGTTCAAAAAATCCAAATCTTCGTCTTCGTCGCGGTCTTCTTCTTCTTCTTCTTGGTCTTCGCACTCGTCGCGTCACTACTACGCGCCGCCGACTTATCACTCCACGCCGTCTCCTTCCTCATCGTCGGAAGACGGCGGCGGTACGGCGTTAATCGGTTTCGTGATTGTGTTGGGGGCTATCGTTTGTGTGTTAGCATTCTGCGACTATTGTACGGCGGCGGAGAAGAGAAACGTTAACTGTGCCGGGGTTGGGAAACTAAGCGTGGTGAAGCTTCAGGTTGGTTTGATGGGCAAGGCGCGGTCACTCCAAAGGGATCTTAATCGAATTACTGAAACTGCAGATACTTCTACTCCAAAGGGTTTGAGCTATGTTTTGACAGGGGCAACGACAGCTTTGCTTCGGAATCTTGATCATTGCATCTCAAGCTATTCATCTGTTATACGAAAGTCTGAGATAGAGGATGCAGAGGAATGCTTCAAACTATTTTCTTTGGAAGAGGCGGTTAAATTTGACGAAGTGACCCTTGCCAATGTGAACAACTTCAAAAAGCGCTCAAAAAGCCAGTCACCTAATGAAATCCACAAAGAATATATAGTGGTTACAATTCTGGTGGCTACTGATGGAGTACAGAAGTTGCCCACCATCAGTGGCACTCGTGACTTGAAGAAAGCATTACATAAACTTGGAGCCATTTCCTCGAGCAAAATAATGGCTGTAGAGGTCTTGTGGACTCCTCAACAAGAAAACGATACTTTGACTGAGAGGGAACTACTCAAAGGTTACCCAGATTTGAGGGGTTTTTATGAAGAAGCATATCAAGGGCCATATGAAGATCAGCAGCCGTTCTTAGGGGCAAATGGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

324

Amino Acids

35.0

Weight (kDa)

8.42

Isoelectric Point (pI)

56.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 122 - 301 1.7e-59 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 71, 139, 178, 191, 406
AclI AACGTT 1 cut(s) 339
AclWI GGATC 1 cut(s) 429
AcoI YGGCCR 2 cut(s) 18, 88
AcsI RAATTY 1 cut(s) 614
AcuI CTGAAG 1 cut(s) 365
AfaI GTAC 3 cut(s) 250, 319, 735
AfeI AGCGCT 1 cut(s) 659
AfiI CCNNNNNNNGG 2 cut(s) 357, 956
AgsI TTSAA 4 cut(s) 112, 586, 652, 772
AjiI CACGTC 1 cut(s) 94
AluBI AGCT 6 cut(s) 66, 105, 379, 474, 500, 534
AluI AGCT 6 cut(s) 66, 105, 379, 474, 500, 534
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 1 cut(s) 429
Ama87I CYCGRG 1 cut(s) 805
Aor51HI AGCGCT 1 cut(s) 659
AoxI GGCC 3 cut(s) 18, 88, 929
ApeKI GCWGC 1 cut(s) 946
ApoI RAATTY 1 cut(s) 614
ArsI GACNNNNNNTTYG 2 cut(s) 656, 688
Asp700I GAANNNNTTC 1 cut(s) 647
AspLEI GCGC 3 cut(s) 193, 406, 660
AspS9I GGNCC 1 cut(s) 929
AsuC2I CCSGG 1 cut(s) 352
AsuHPI GGTGA 2 cut(s) 385, 666
AvaI CYCGRG 1 cut(s) 805
BauI CACGAG 1 cut(s) 762
BbsI GAAGAC 4 cut(s) 123, 135, 156, 243
BbvI GCAGC 1 cut(s) 958
BccI CCATC 3 cut(s) 388, 722, 758
BceAI ACGGC 6 cut(s) 17, 199, 256, 267, 336, 934
BcgI CGANNNNNNTGC 2 cut(s) 484, 518
BclI TGATCA 1 cut(s) 517
BcnI CCSGG 1 cut(s) 352
BcoDI GTCTC 1 cut(s) 222
BfmI CTRYAG 2 cut(s) 444, 822
BfoI RGCGCY 1 cut(s) 661
BglI GCCNNNNNGGC 1 cut(s) 96
BisI GCNGC 7 cut(s) 30, 78, 88, 194, 244, 324, 947
BlsI GCNGC 7 cut(s) 31, 79, 89, 195, 245, 325, 948
Bme1390I CCNGG 1 cut(s) 352
BmeT110I CYCGRG 1 cut(s) 805
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 929
BmiI GGNNCC 1 cut(s) 796
BmrFI CCNGG 1 cut(s) 352
BmsI GCATC 2 cut(s) 534, 559
BpiI GAAGAC 4 cut(s) 123, 135, 156, 243
BpuEI CTTGAG 1 cut(s) 514
BpuMI CCSGG 1 cut(s) 352
BsaBI GATNNNNATC 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 351
BsaXI ACNNNNNCTCC 4 cut(s) 202, 232, 442, 472
Bsc4I CCNNNNNNNGG 2 cut(s) 357, 956
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 670
Bse3DI GCAATG 1 cut(s) 520
Bse8I GATNNNNATC 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 1 cut(s) 574
BseJI GATNNNNATC 1 cut(s) 426
BseLI CCNNNNNNNGG 2 cut(s) 357, 956
BseMI GCAATG 1 cut(s) 520
BseMII CTCAG 2 cut(s) 549, 858
BseNI ACTGG 1 cut(s) 670
BseRI GAGGAG 1 cut(s) 831
BseXI GCAGC 1 cut(s) 958
Bsh1236I CGCG 5 cut(s) 71, 139, 178, 191, 406
BshFI GGCC 3 cut(s) 20, 90, 931
BsiHKCI CYCGRG 1 cut(s) 805
BsiSI CCGG 3 cut(s) 17, 84, 351
BslI CCNNNNNNNGG 2 cut(s) 357, 956
BsmAI GTCTC 1 cut(s) 222
BsmBI CGTCTC 1 cut(s) 222
BsmI GAATGC 2 cut(s) 302, 584
BsnI GGCC 3 cut(s) 20, 90, 931
BsoBI CYCGRG 1 cut(s) 805
Bsp143I GATC 3 cut(s) 421, 517, 940
BspANI GGCC 3 cut(s) 20, 90, 931
BspCNI CTCAG 2 cut(s) 550, 859
BspFNI CGCG 5 cut(s) 71, 139, 178, 191, 406
BspLI GGNNCC 1 cut(s) 796
BspMAI CTGCAG 1 cut(s) 448
BspPI GGATC 1 cut(s) 429
BsrDI GCAATG 1 cut(s) 520
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 1 cut(s) 670
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 3 cut(s) 421, 517, 940
BssSI CACGAG 1 cut(s) 762
Bst2BI CACGAG 1 cut(s) 762
Bst4CI ACNGT 2 cut(s) 25, 347
Bst6I CTCTTC 2 cut(s) 326, 597
BstDEI CTNAG 4 cut(s) 365, 558, 867, 955
BstEII GGTNACC 1 cut(s) 887
BstF5I GGATG 1 cut(s) 574
BstFNI CGCG 5 cut(s) 71, 139, 178, 191, 406
BstH2I RGCGCY 1 cut(s) 661
BstHHI GCGC 3 cut(s) 193, 406, 660
BstKTI GATC 3 cut(s) 424, 520, 943
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 3 cut(s) 421, 517, 940
BstMWI GCNNNNNNNGC 7 cut(s) 26, 77, 96, 175, 497, 531, 666
BstPI GGTNACC 1 cut(s) 887
BstSCI CCNGG 1 cut(s) 350
BstSFI CTRYAG 2 cut(s) 444, 822
BstUI CGCG 5 cut(s) 71, 139, 178, 191, 406
BstV1I GCAGC 1 cut(s) 958
BstV2I GAAGAC 4 cut(s) 123, 135, 156, 243
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BsuRI GGCC 3 cut(s) 20, 90, 931
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 1 cut(s) 574
BtsIMutI CAGTG 1 cut(s) 760
CfoI GCGC 3 cut(s) 193, 406, 660
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 929
CseI GACGC 2 cut(s) 60, 167
Csp6I GTAC 3 cut(s) 249, 318, 734
CspCI CAANNNNNGTGG 2 cut(s) 699, 734
CviQI GTAC 3 cut(s) 249, 318, 734
DdeI CTNAG 4 cut(s) 365, 558, 867, 955
DpnI GATC 3 cut(s) 423, 519, 942
DpnII GATC 3 cut(s) 421, 517, 940
EaeI YGGCCR 2 cut(s) 18, 88
Eam1104I CTCTTC 2 cut(s) 326, 597
EarI CTCTTC 2 cut(s) 326, 597
EciI GGCGGA 3 cut(s) 64, 114, 341
Eco47III AGCGCT 1 cut(s) 659
Eco57I CTGAAG 1 cut(s) 365
Eco88I CYCGRG 1 cut(s) 805
Eco91I GGTNACC 1 cut(s) 887
EcoO65I GGTNACC 1 cut(s) 887
Esp3I CGTCTC 1 cut(s) 222
FaiI YATR 9 cut(s) 477, 548, 699, 701, 786, 912, 922, 934, 936
FalI AAGNNNNNCTT 2 cut(s) 615, 647
FauNDI CATATG 1 cut(s) 934
FbaI TGATCA 1 cut(s) 517
Fnu4HI GCNGC 7 cut(s) 30, 78, 88, 194, 244, 324, 947
FokI GGATG 1 cut(s) 581
Fsp4HI GCNGC 7 cut(s) 30, 78, 88, 194, 244, 324, 947
GlaI GCGC 3 cut(s) 192, 405, 659
GluI GCNGC 7 cut(s) 30, 78, 88, 194, 244, 324, 947
HaeII RGCGCY 1 cut(s) 661
HaeIII GGCC 3 cut(s) 20, 90, 931
HapII CCGG 3 cut(s) 17, 84, 351
HgaI GACGC 2 cut(s) 60, 167
HhaI GCGC 3 cut(s) 193, 406, 660
Hin6I GCGC 3 cut(s) 191, 404, 658
HinP1I GCGC 3 cut(s) 191, 404, 658
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HindIII AAGCTT 2 cut(s) 103, 377
HinfI GANTC 3 cut(s) 58, 511, 838
HpaI GTTAAC 1 cut(s) 343
HpaII CCGG 3 cut(s) 17, 84, 351
HphI GGTGA 2 cut(s) 385, 666
Hpy166II GTNNAC 3 cut(s) 343, 643, 837
Hpy188I TCNGA 4 cut(s) 63, 235, 510, 559
Hpy188III TCNNGA 3 cut(s) 268, 515, 764
Hpy8I GTNNAC 3 cut(s) 343, 643, 837
Hpy99I CGWCG 5 cut(s) 29, 98, 139, 178, 235
HpyAV CCTTC 1 cut(s) 231
HpyCH4III ACNGT 2 cut(s) 25, 347
HpyCH4IV ACGT 2 cut(s) 93, 339
HpyCH4V TGCA 3 cut(s) 446, 525, 572
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 77, 96, 175, 497, 531, 666
HpyF3I CTNAG 4 cut(s) 365, 558, 867, 955
HpySE526I ACGT 2 cut(s) 93, 339
HspAI GCGC 3 cut(s) 191, 404, 658
Ksp22I TGATCA 1 cut(s) 517
KspAI GTTAAC 1 cut(s) 343
Kzo9I GATC 3 cut(s) 421, 517, 940
LmnI GCTCC 1 cut(s) 794
LpnPI CCDG 8 cut(s) 30, 97, 364, 368, 471, 683, 701, 906
Lsp1109I GCAGC 1 cut(s) 958
LweI GCATC 2 cut(s) 534, 559
MaeII ACGT 2 cut(s) 93, 339
MaeIII GTNAC 7 cut(s) 179, 408, 625, 672, 706, 764, 887
MalI GATC 3 cut(s) 423, 519, 942
MboI GATC 3 cut(s) 421, 517, 940
MflI RGATCY 1 cut(s) 421
MluCI AATT 3 cut(s) 432, 614, 711
MlyI GAGTC 1 cut(s) 832
MmeI TCCRAC 1 cut(s) 213
MroXI GAANNNNTTC 1 cut(s) 647
MseI TTAA 4 cut(s) 257, 342, 426, 612
MspI CCGG 3 cut(s) 17, 84, 351
MspR9I CCNGG 1 cut(s) 352
Mva1269I GAATGC 2 cut(s) 302, 584
MvnI CGCG 5 cut(s) 71, 139, 178, 191, 406
MwoI GCNNNNNNNGC 7 cut(s) 26, 77, 96, 175, 497, 531, 666
NciI CCSGG 1 cut(s) 352
NdeI CATATG 1 cut(s) 934
NdeII GATC 3 cut(s) 421, 517, 940
NlaIV GGNNCC 1 cut(s) 796
NmuCI GTSAC 5 cut(s) 179, 408, 625, 672, 764
PaeR7I CTCGAG 1 cut(s) 805
PctI GAATGC 2 cut(s) 302, 584
PdmI GAANNNNTTC 1 cut(s) 647
PfeI GAWTC 2 cut(s) 58, 511
PkrI GCNGC 7 cut(s) 31, 79, 89, 195, 245, 325, 948
PleI GAGTC 1 cut(s) 832
PpsI GAGTC 1 cut(s) 832
Psp1406I AACGTT 1 cut(s) 339
PspEI GGTNACC 1 cut(s) 887
PspN4I GGNNCC 1 cut(s) 796
PspPI GGNCC 1 cut(s) 929
PspXI VCTCGAGB 1 cut(s) 805
PstI CTGCAG 1 cut(s) 448
PsuI RGATCY 1 cut(s) 421
RsaI GTAC 3 cut(s) 250, 319, 735
RsaNI GTAC 3 cut(s) 249, 318, 734
SaqAI TTAA 4 cut(s) 257, 342, 426, 612
SatI GCNGC 7 cut(s) 30, 78, 88, 194, 244, 324, 947
Sau3AI GATC 3 cut(s) 421, 517, 940
Sau96I GGNCC 1 cut(s) 929
SchI GAGTC 1 cut(s) 832
ScrFI CCNGG 1 cut(s) 352
SfaNI GCATC 2 cut(s) 534, 559
SfcI CTRYAG 2 cut(s) 444, 822
Sfr274I CTCGAG 1 cut(s) 805
SgrAI CRCCGGYG 1 cut(s) 83
SlaI CTCGAG 1 cut(s) 805
SmlI CTYRAG 2 cut(s) 529, 805
SmoI CTYRAG 2 cut(s) 529, 805
Sse9I AATT 3 cut(s) 432, 614, 711
StyD4I CCNGG 1 cut(s) 350
TaaI ACNGT 2 cut(s) 25, 347
TaiI ACGT 2 cut(s) 96, 342
TaqI TCGA 2 cut(s) 430, 806
TasI AATT 3 cut(s) 432, 614, 711
TatI WGTACW 1 cut(s) 733
TauI GCSGC 6 cut(s) 32, 80, 90, 196, 246, 326
TfiI GAWTC 2 cut(s) 58, 511
Tru1I TTAA 4 cut(s) 257, 342, 426, 612
Tru9I TTAA 4 cut(s) 257, 342, 426, 612
TscAI CASTG 1 cut(s) 760
TseFI GTSAC 5 cut(s) 179, 408, 625, 672, 764
TseI GCWGC 1 cut(s) 946
Tsp45I GTSAC 5 cut(s) 179, 408, 625, 672, 764
TspDTI ATGAA 4 cut(s) 528, 696, 927, 951
TspRI CASTG 1 cut(s) 760
XapI RAATTY 1 cut(s) 614
XhoI CTCGAG 1 cut(s) 805
XmnI GAANNNNTTC 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.