Rh3BG041200

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000368
Physical Location & Seq
Reverse (-)
2654607 .. 2657992
3386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG041200.1

Sequence Viewer

Length: 756 bp
ATGGCTGCCGTGTTGTTGAGTTTGTTATTGACGTTTAACCAGAACTCGTCGTGGGCCGCCTCGGGTGGTCGGGTCAGGGGAAGCTCGTTCTCCTCACGCTCTTCGTCGTCATCCTCGTCAGGGTCGTCGTCTTATTCTTCTTCATCATCGTCGTATAGATCTTCAAGCTCTTCACCTTCGTATTCGTACAGGTCGTATTCGTCATATTCAACGCCTTCATCATCGAGTACTTCGTCTACTACCTCGATGTCCGATGCCGTAATTTGGCTGTGCATAATCCTTCTGATTTTGGTTCTGTTGGCTGTCTCTGTGGGCTCGGGCGCGGGCTCGGGCTTGGCCGCATATTCAAGTGTTGCTGCGACCTTAAACGTTGTTAAGCTTCAGGTTACTCCAAATCATAACATGATGGATGCGGAGAAATGCTTCAATAAAATTTCTATTGAAGAGAGGGCTAAATTTGATGAAGAGACGCTTGTCAACGTGAACAACCAAAAAAGAAAAAGCTCGACAAGCAAGGCTGATGATGGATTCCAAAACGAATATATAGTGGTGACATTGTTAGTTGCGATTGAAGGGAGGCATAAGTTGCCCACCATCAATGGCAGCGCTGACTTGAAGGAAGCATTGAAAAGTCTCGGATCCATTCCTTCAAAGAATATACTGGCAGCAGAAGTGTTATGGACTCCACAGAAAGAAAATGACACACTGTCCGAGGAGGAACTAATAGAAGATTACCCACTTCTGAAGTGTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

251

Amino Acids

26.76

Weight (kDa)

6.16

Isoelectric Point (pI)

61.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 131 - 249 6.1e-45 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 236
AccII CGCG 1 cut(s) 323
AciI CCGC 4 cut(s) 57, 323, 339, 413
AclI AACGTT 1 cut(s) 369
AclWI GGATC 2 cut(s) 633, 646
AcoI YGGCCR 1 cut(s) 336
AcsI RAATTY 2 cut(s) 432, 455
AcuI CTGAAG 1 cut(s) 365
AfaI GTAC 2 cut(s) 188, 229
AfeI AGCGCT 1 cut(s) 607
AfiI CCNNNNNNNGG 2 cut(s) 120, 264
AgsI TTSAA 9 cut(s) 165, 210, 348, 427, 443, 572, 616, 628, 651
AhdI GACNNNNNGTC 1 cut(s) 706
AluBI AGCT 4 cut(s) 84, 168, 379, 504
AluI AGCT 4 cut(s) 84, 168, 379, 504
Alw26I GTCTC 3 cut(s) 310, 461, 638
AlwI GGATC 2 cut(s) 633, 646
Ama87I CYCGRG 3 cut(s) 61, 316, 328
Aor51HI AGCGCT 1 cut(s) 607
AoxI GGCC 2 cut(s) 54, 336
ApeKI GCWGC 4 cut(s) 5, 356, 603, 665
ApoI RAATTY 2 cut(s) 432, 455
Asp700I GAANNNNTTC 1 cut(s) 422
AspLEI GCGC 2 cut(s) 323, 608
AspS9I GGNCC 1 cut(s) 54
AsuHPI GGTGA 2 cut(s) 165, 562
AvaI CYCGRG 3 cut(s) 61, 316, 328
BamHI GGATCC 1 cut(s) 638
BanII GRGCYC 2 cut(s) 317, 329
BbvI GCAGC 3 cut(s) 343, 615, 677
BccI CCATC 3 cut(s) 400, 518, 602
BceAI ACGGC 1 cut(s) 242
BcoDI GTCTC 3 cut(s) 310, 461, 638
BfoI RGCGCY 1 cut(s) 609
BglII AGATCT 1 cut(s) 158
BisI GCNGC 6 cut(s) 6, 57, 339, 357, 604, 666
BlsI GCNGC 6 cut(s) 7, 58, 340, 358, 605, 667
BmcAI AGTACT 1 cut(s) 229
BmeRI GACNNNNNGTC 1 cut(s) 706
BmeT110I CYCGRG 3 cut(s) 61, 316, 328
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 640
BmsI GCATC 2 cut(s) 244, 400
BoxI GACNNNNGTC 1 cut(s) 473
BsaJI CCNNGG 2 cut(s) 60, 711
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 264
Bse1I ACTGG 1 cut(s) 666
BseDI CCNNGG 2 cut(s) 60, 711
BseGI GGATG 2 cut(s) 110, 415
BseLI CCNNNNNNNGG 2 cut(s) 120, 264
BseNI ACTGG 1 cut(s) 666
BseRI GAGGAG 2 cut(s) 82, 728
BseXI GCAGC 3 cut(s) 343, 615, 677
Bsh1236I CGCG 1 cut(s) 323
BshFI GGCC 2 cut(s) 56, 338
BsiHKCI CYCGRG 3 cut(s) 61, 316, 328
BslI CCNNNNNNNGG 2 cut(s) 120, 264
BsmAI GTCTC 3 cut(s) 310, 461, 638
BsmBI CGTCTC 1 cut(s) 461
BsnI GGCC 2 cut(s) 56, 338
BsoBI CYCGRG 3 cut(s) 61, 316, 328
Bsp1286I GDGCHC 2 cut(s) 317, 329
Bsp143I GATC 2 cut(s) 158, 638
BspACI CCGC 4 cut(s) 57, 323, 339, 413
BspANI GGCC 2 cut(s) 56, 338
BspFNI CGCG 1 cut(s) 323
BspLI GGNNCC 1 cut(s) 640
BspPI GGATC 2 cut(s) 633, 646
BspQI GCTCTTC 2 cut(s) 106, 175
BsrI ACTGG 1 cut(s) 666
BssECI CCNNGG 2 cut(s) 60, 711
BssMI GATC 2 cut(s) 158, 638
Bst4CI ACNGT 1 cut(s) 708
Bst6I CTCTTC 4 cut(s) 106, 175, 438, 459
BstAPI GCANNNNNTGC 1 cut(s) 586
BstC8I GCNNGC 1 cut(s) 325
BstF5I GGATG 2 cut(s) 110, 415
BstFNI CGCG 1 cut(s) 323
BstH2I RGCGCY 1 cut(s) 609
BstHHI GCGC 2 cut(s) 323, 608
BstKTI GATC 2 cut(s) 161, 641
BstMAI GTCTC 3 cut(s) 310, 461, 638
BstMBI GATC 2 cut(s) 158, 638
BstMWI GCNNNNNNNGC 2 cut(s) 510, 586
BstPAI GACNNNNGTC 1 cut(s) 473
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 3 cut(s) 343, 615, 677
BstX2I RGATCY 2 cut(s) 158, 638
BstYI RGATCY 2 cut(s) 158, 638
BsuRI GGCC 2 cut(s) 56, 338
BtsCI GGATG 2 cut(s) 110, 415
BtsIMutI CAGTG 1 cut(s) 704
Cac8I GCNNGC 1 cut(s) 325
CfoI GCGC 2 cut(s) 323, 608
Cfr13I GGNCC 1 cut(s) 54
CseI GACGC 1 cut(s) 478
Csp6I GTAC 2 cut(s) 187, 228
CviAII CATG 1 cut(s) 403
CviQI GTAC 2 cut(s) 187, 228
DpnI GATC 2 cut(s) 160, 640
DpnII GATC 2 cut(s) 158, 638
DriI GACNNNNNGTC 1 cut(s) 706
EaeI YGGCCR 1 cut(s) 336
Eam1104I CTCTTC 4 cut(s) 106, 175, 438, 459
Eam1105I GACNNNNNGTC 1 cut(s) 706
EarI CTCTTC 4 cut(s) 106, 175, 438, 459
Eco24I GRGCYC 2 cut(s) 317, 329
Eco47III AGCGCT 1 cut(s) 607
Eco57I CTGAAG 1 cut(s) 365
Eco88I CYCGRG 3 cut(s) 61, 316, 328
EcoT38I GRGCYC 2 cut(s) 317, 329
Esp3I CGTCTC 1 cut(s) 461
FaeI CATG 1 cut(s) 406
FalI AAGNNNNNCTT 2 cut(s) 456, 488
FatI CATG 1 cut(s) 402
FauI CCCGC 1 cut(s) 316
FblI GTMKAC 1 cut(s) 236
Fnu4HI GCNGC 6 cut(s) 6, 57, 339, 357, 604, 666
FokI GGATG 2 cut(s) 97, 422
FriOI GRGCYC 2 cut(s) 317, 329
Fsp4HI GCNGC 6 cut(s) 6, 57, 339, 357, 604, 666
GlaI GCGC 2 cut(s) 322, 607
GluI GCNGC 6 cut(s) 6, 57, 339, 357, 604, 666
HaeII RGCGCY 1 cut(s) 609
HaeIII GGCC 2 cut(s) 56, 338
HgaI GACGC 1 cut(s) 478
HhaI GCGC 2 cut(s) 323, 608
Hin1II CATG 1 cut(s) 406
Hin6I GCGC 2 cut(s) 321, 606
HinP1I GCGC 2 cut(s) 321, 606
HincII GTYRAC 1 cut(s) 478
HindII GTYRAC 1 cut(s) 478
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 2 cut(s) 528, 682
HphI GGTGA 2 cut(s) 165, 562
Hpy166II GTNNAC 3 cut(s) 237, 478, 484
Hpy188I TCNGA 5 cut(s) 253, 285, 638, 712, 744
Hpy8I GTNNAC 3 cut(s) 237, 478, 484
Hpy99I CGWCG 4 cut(s) 52, 109, 130, 154
HpyAV CCTTC 6 cut(s) 186, 225, 290, 566, 610, 657
HpyCH4III ACNGT 1 cut(s) 708
HpyCH4IV ACGT 3 cut(s) 32, 369, 480
HpyCH4V TGCA 1 cut(s) 273
HpyF10VI GCNNNNNNNGC 2 cut(s) 510, 586
HpySE526I ACGT 3 cut(s) 32, 369, 480
Hsp92II CATG 1 cut(s) 406
HspAI GCGC 2 cut(s) 321, 606
Kzo9I GATC 2 cut(s) 158, 638
LguI GCTCTTC 2 cut(s) 106, 175
LpnPI CCDG 6 cut(s) 53, 61, 105, 175, 368, 647
Lsp1109I GCAGC 3 cut(s) 343, 615, 677
LweI GCATC 2 cut(s) 244, 400
MaeII ACGT 3 cut(s) 32, 369, 480
MaeIII GTNAC 2 cut(s) 385, 550
MalI GATC 2 cut(s) 160, 640
MboI GATC 2 cut(s) 158, 638
MboII GAAGA 8 cut(s) 93, 129, 132, 153, 162, 455, 476, 740
MflI RGATCY 2 cut(s) 158, 638
MhlI GDGCHC 2 cut(s) 317, 329
MluCI AATT 3 cut(s) 261, 432, 455
MlyI GAGTC 1 cut(s) 676
MnlI CCTC 8 cut(s) 70, 103, 124, 253, 441, 570, 706, 709
MroXI GAANNNNTTC 1 cut(s) 422
MseI TTAA 3 cut(s) 36, 365, 375
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 2 cut(s) 510, 586
NdeII GATC 2 cut(s) 158, 638
NlaIII CATG 1 cut(s) 406
NlaIV GGNNCC 1 cut(s) 640
NmuCI GTSAC 1 cut(s) 550
PciSI GCTCTTC 2 cut(s) 106, 175
PcsI WCGNNNNNNNCGW 4 cut(s) 113, 122, 191, 230
PdmI GAANNNNTTC 1 cut(s) 422
PfeI GAWTC 1 cut(s) 528
PkrI GCNGC 6 cut(s) 7, 58, 340, 358, 605, 667
PleI GAGTC 1 cut(s) 676
PpsI GAGTC 1 cut(s) 676
PshAI GACNNNNGTC 1 cut(s) 473
Psp1406I AACGTT 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 640
PspPI GGNCC 1 cut(s) 54
PsuI RGATCY 2 cut(s) 158, 638
RsaI GTAC 2 cut(s) 188, 229
RsaNI GTAC 2 cut(s) 187, 228
SapI GCTCTTC 2 cut(s) 106, 175
SaqAI TTAA 3 cut(s) 36, 365, 375
SatI GCNGC 6 cut(s) 6, 57, 339, 357, 604, 666
Sau3AI GATC 2 cut(s) 158, 638
Sau96I GGNCC 1 cut(s) 54
ScaI AGTACT 1 cut(s) 229
SchI GAGTC 1 cut(s) 676
SduI GDGCHC 2 cut(s) 317, 329
SfaNI GCATC 2 cut(s) 244, 400
Sse9I AATT 3 cut(s) 261, 432, 455
SsiI CCGC 4 cut(s) 57, 323, 339, 413
TaaI ACNGT 1 cut(s) 708
TaiI ACGT 3 cut(s) 35, 372, 483
TaqI TCGA 3 cut(s) 224, 245, 506
TasI AATT 3 cut(s) 261, 432, 455
TatI WGTACW 1 cut(s) 227
TauI GCSGC 2 cut(s) 59, 341
TfiI GAWTC 1 cut(s) 528
Tru1I TTAA 3 cut(s) 36, 365, 375
Tru9I TTAA 3 cut(s) 36, 365, 375
TscAI CASTG 1 cut(s) 711
TseFI GTSAC 1 cut(s) 550
TseI GCWGC 4 cut(s) 5, 356, 603, 665
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 3 cut(s) 132, 207, 477
TspRI CASTG 1 cut(s) 711
XapI RAATTY 2 cut(s) 432, 455
XmiI GTMKAC 1 cut(s) 236
XmnI GAANNNNTTC 1 cut(s) 422
ZrmI AGTACT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.