RLG00000025630

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000368
Physical Location & Seq
Forward (+)
47190297 .. 47202798
12502 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025630

Sequence Viewer

Length: 933 bp
ATGCCACTGAGAAATCCGGCCACCGTCGCCGTGTTGTTCTTGTTCCTCTTGTTGATTCCGAGCTTCGCCTCCGCCGCCACCGGCGGCCACGTCGGCGGAAGCTTGTTCAAAAAATCCAAGTCTTCGTCTTCGTCGCGGTCTTCTTCTTCTTCTTCTTCTTGGTCTTCGCACTCGTCGCGTCACTACTACGCGCCGCCGACTTATCACTCCACGCCGTCTCCTTCCTCCTCGTCGGAAGACGGTGGCGGTACGGCGTTAATCGGTTTCGTGATTGTGTTGGGGGTTATCGTTTGTGTGTTAGCATTCTGCGAGTATTGTACGGCGGCGGAGAAGAGAAACGGTAACTGTGCCGGGGTTGGGAAACTAAGCGTGGTGAAGCTTCAGGTATATGTTACTCTAAATAATCTTGCGAGGGATTTAATAGAAGATTTGTTGATGGATGAATTTAAGCTACTCTTTTTACTTCTATTTTTCTTTCCTAATGCAATTTTTACTCCTTTGGTTTCAGGGGCAATGACGGCTTTGCTTCGAAATCTTGATCATTGCATCTCAAGCTATTCATCTGTTATACGAAAATCCGAGATAGAGGATGCAGAGGAATGCTTCAAACTATTTTCTTTGGAAGAGGCGGCTAAATTTGACGAAGTGACCCTTGCCAATGTGAACAACTTCAAAAAGCGCTCAAAAAGCCAGTCACCTAATGCAATCCACAAAGAATATACAGTGGTTACCGTTCTCGTGGGTGTGAAAGGAATGCACAAATTTCCGGCCATCAATGATAATAGTGACTTAAACGAAGCCTTGCAAAATCTCAAATCCATTCCCTCACGTGACTTATTAGCAGTACGGGTGTTATGGACTCCTCAACAGGGAAATGATACTTTGTCGGAGCAAGAACTACTTAAAGATTACCCCCTTCTGAAACAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

311

Amino Acids

33.88

Weight (kDa)

7.63

Isoelectric Point (pI)

58.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 167 - 309 1.3e-38 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 136, 178, 191
AcoI YGGCCR 3 cut(s) 18, 85, 768
AcsI RAATTY 3 cut(s) 443, 635, 761
AcuI CTGAAG 1 cut(s) 365
AcvI CACGTG 1 cut(s) 830
AfaI GTAC 3 cut(s) 250, 319, 846
AfeI AGCGCT 1 cut(s) 680
AfiI CCNNNNNNNGG 2 cut(s) 357, 869
AgsI TTSAA 3 cut(s) 109, 607, 673
AjiI CACGTC 1 cut(s) 91
AluBI AGCT 5 cut(s) 63, 102, 379, 451, 555
AluI AGCT 5 cut(s) 63, 102, 379, 451, 555
Alw26I GTCTC 1 cut(s) 222
Aor51HI AGCGCT 1 cut(s) 680
AoxI GGCC 3 cut(s) 18, 85, 768
ApoI RAATTY 3 cut(s) 443, 635, 761
ArsI GACNNNNNNTTYG 2 cut(s) 677, 709
Asp700I GAANNNNTTC 1 cut(s) 668
AspLEI GCGC 2 cut(s) 193, 681
AsuC2I CCSGG 1 cut(s) 352
AsuHPI GGTGA 2 cut(s) 385, 687
AsuII TTCGAA 1 cut(s) 529
BauI CACGAG 1 cut(s) 737
BbrPI CACGTG 1 cut(s) 830
BbsI GAAGAC 5 cut(s) 114, 120, 132, 156, 243
BccI CCATC 2 cut(s) 430, 779
BceAI ACGGC 5 cut(s) 14, 199, 267, 336, 534
BclI TGATCA 1 cut(s) 538
BcnI CCSGG 1 cut(s) 352
BcoDI GTCTC 1 cut(s) 222
BfoI RGCGCY 1 cut(s) 682
BglI GCCNNNNNGGC 1 cut(s) 93
BisI GCNGC 5 cut(s) 75, 85, 194, 324, 630
BlsI GCNGC 5 cut(s) 76, 86, 195, 325, 631
Bme1390I CCNGG 1 cut(s) 352
BmgBI CACGTC 1 cut(s) 91
BmrFI CCNGG 1 cut(s) 352
BmsI GCATC 2 cut(s) 555, 580
BpiI GAAGAC 5 cut(s) 114, 120, 132, 156, 243
Bpu14I TTCGAA 1 cut(s) 529
BpuEI CTTGAG 1 cut(s) 535
BpuMI CCSGG 1 cut(s) 352
BsaAI YACGTR 1 cut(s) 830
BsaJI CCNNGG 1 cut(s) 351
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bsc4I CCNNNNNNNGG 2 cut(s) 357, 869
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 691
Bse3DI GCAATG 2 cut(s) 519, 541
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 2 cut(s) 445, 595
BseLI CCNNNNNNNGG 2 cut(s) 357, 869
BseMI GCAATG 2 cut(s) 519, 541
BseNI ACTGG 1 cut(s) 691
BseRI GAGGAG 2 cut(s) 217, 852
Bsh1236I CGCG 3 cut(s) 136, 178, 191
BshFI GGCC 3 cut(s) 20, 87, 770
BsiSI CCGG 4 cut(s) 17, 81, 351, 767
BslI CCNNNNNNNGG 2 cut(s) 357, 869
BsmAI GTCTC 1 cut(s) 222
BsmBI CGTCTC 1 cut(s) 222
BsmI GAATGC 3 cut(s) 302, 605, 759
BsnI GGCC 3 cut(s) 20, 87, 770
Bsp119I TTCGAA 1 cut(s) 529
Bsp143I GATC 1 cut(s) 538
BspANI GGCC 3 cut(s) 20, 87, 770
BspFNI CGCG 3 cut(s) 136, 178, 191
BspT104I TTCGAA 1 cut(s) 529
BsrDI GCAATG 2 cut(s) 519, 541
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 1 cut(s) 691
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 1 cut(s) 538
BssSI CACGAG 1 cut(s) 737
Bst2BI CACGAG 1 cut(s) 737
Bst4CI ACNGT 6 cut(s) 25, 242, 341, 347, 724, 733
Bst6I CTCTTC 2 cut(s) 326, 618
BstBAI YACGTR 1 cut(s) 830
BstBI TTCGAA 1 cut(s) 529
BstDEI CTNAG 2 cut(s) 8, 365
BstEII GGTNACC 1 cut(s) 727
BstF5I GGATG 2 cut(s) 445, 595
BstFNI CGCG 3 cut(s) 136, 178, 191
BstH2I RGCGCY 1 cut(s) 682
BstHHI GCGC 2 cut(s) 193, 681
BstKTI GATC 1 cut(s) 541
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 1 cut(s) 538
BstMWI GCNNNNNNNGC 7 cut(s) 26, 74, 93, 175, 518, 552, 687
BstPI GGTNACC 1 cut(s) 727
BstSCI CCNGG 1 cut(s) 350
BstUI CGCG 3 cut(s) 136, 178, 191
BstV2I GAAGAC 5 cut(s) 114, 120, 132, 156, 243
BsuRI GGCC 3 cut(s) 20, 87, 770
BtrI CACGTC 1 cut(s) 91
BtsCI GGATG 2 cut(s) 445, 595
BtsIMutI CAGTG 2 cut(s) 5, 729
CfoI GCGC 2 cut(s) 193, 681
Cfr10I RCCGGY 1 cut(s) 80
CseI GACGC 1 cut(s) 167
Csp6I GTAC 3 cut(s) 249, 318, 845
CviQI GTAC 3 cut(s) 249, 318, 845
DdeI CTNAG 2 cut(s) 8, 365
DpnI GATC 1 cut(s) 540
DpnII GATC 1 cut(s) 538
EaeI YGGCCR 3 cut(s) 18, 85, 768
Eam1104I CTCTTC 2 cut(s) 326, 618
EarI CTCTTC 2 cut(s) 326, 618
EciI GGCGGA 3 cut(s) 61, 111, 341
Eco47III AGCGCT 1 cut(s) 680
Eco57I CTGAAG 1 cut(s) 365
Eco72I CACGTG 1 cut(s) 830
Eco91I GGTNACC 1 cut(s) 727
EcoO65I GGTNACC 1 cut(s) 727
Esp3I CGTCTC 1 cut(s) 222
FaiI YATR 5 cut(s) 388, 390, 569, 720, 856
FalI AAGNNNNNCTT 6 cut(s) 440, 472, 636, 668, 885, 917
FbaI TGATCA 1 cut(s) 538
Fnu4HI GCNGC 5 cut(s) 75, 85, 194, 324, 630
FokI GGATG 2 cut(s) 452, 602
Fsp4HI GCNGC 5 cut(s) 75, 85, 194, 324, 630
GlaI GCGC 2 cut(s) 192, 680
GluI GCNGC 5 cut(s) 75, 85, 194, 324, 630
HaeII RGCGCY 1 cut(s) 682
HaeIII GGCC 3 cut(s) 20, 87, 770
HapII CCGG 4 cut(s) 17, 81, 351, 767
HgaI GACGC 1 cut(s) 167
HhaI GCGC 2 cut(s) 193, 681
Hin6I GCGC 2 cut(s) 191, 679
HinP1I GCGC 2 cut(s) 191, 679
HindIII AAGCTT 2 cut(s) 100, 377
HinfI GANTC 2 cut(s) 55, 859
HpaII CCGG 4 cut(s) 17, 81, 351, 767
HphI GGTGA 2 cut(s) 385, 687
Hpy166II GTNNAC 1 cut(s) 664
Hpy188I TCNGA 5 cut(s) 60, 235, 580, 889, 921
Hpy188III TCNNGA 2 cut(s) 268, 536
Hpy8I GTNNAC 1 cut(s) 664
Hpy99I CGWCG 5 cut(s) 29, 95, 136, 178, 235
HpyAV CCTTC 2 cut(s) 231, 926
HpyCH4III ACNGT 6 cut(s) 25, 242, 341, 347, 724, 733
HpyCH4IV ACGT 2 cut(s) 90, 829
HpyCH4V TGCA 6 cut(s) 485, 546, 593, 704, 757, 805
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 74, 93, 175, 518, 552, 687
HpyF3I CTNAG 2 cut(s) 8, 365
HpySE526I ACGT 2 cut(s) 90, 829
HspAI GCGC 2 cut(s) 191, 679
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 1 cut(s) 538
LmnI GCTCC 1 cut(s) 889
LpnPI CCDG 8 cut(s) 30, 94, 364, 368, 492, 704, 780, 854
LweI GCATC 2 cut(s) 555, 580
MaeII ACGT 2 cut(s) 90, 829
MaeIII GTNAC 8 cut(s) 179, 341, 391, 646, 693, 727, 785, 830
MalI GATC 1 cut(s) 540
MboI GATC 1 cut(s) 538
MluCI AATT 5 cut(s) 443, 486, 635, 761, 926
MlyI GAGTC 1 cut(s) 853
MmeI TCCRAC 2 cut(s) 213, 867
MroXI GAANNNNTTC 1 cut(s) 668
MseI TTAA 5 cut(s) 257, 419, 447, 791, 903
MspI CCGG 4 cut(s) 17, 81, 351, 767
MspR9I CCNGG 1 cut(s) 352
Mva1269I GAATGC 3 cut(s) 302, 605, 759
MvnI CGCG 3 cut(s) 136, 178, 191
MwoI GCNNNNNNNGC 7 cut(s) 26, 74, 93, 175, 518, 552, 687
NciI CCSGG 1 cut(s) 352
NdeII GATC 1 cut(s) 538
NmuCI GTSAC 5 cut(s) 179, 646, 693, 785, 830
NspV TTCGAA 1 cut(s) 529
PctI GAATGC 3 cut(s) 302, 605, 759
PdmI GAANNNNTTC 1 cut(s) 668
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 5 cut(s) 76, 86, 195, 325, 631
PleI GAGTC 1 cut(s) 853
PmaCI CACGTG 1 cut(s) 830
PmlI CACGTG 1 cut(s) 830
PpsI GAGTC 1 cut(s) 853
Ppu21I YACGTR 1 cut(s) 830
PspCI CACGTG 1 cut(s) 830
PspEI GGTNACC 1 cut(s) 727
RsaI GTAC 3 cut(s) 250, 319, 846
RsaNI GTAC 3 cut(s) 249, 318, 845
SaqAI TTAA 5 cut(s) 257, 419, 447, 791, 903
SatI GCNGC 5 cut(s) 75, 85, 194, 324, 630
Sau3AI GATC 1 cut(s) 538
SchI GAGTC 1 cut(s) 853
ScrFI CCNGG 1 cut(s) 352
SetI ASST 9 cut(s) 65, 93, 104, 381, 387, 453, 557, 700, 832
SfaNI GCATC 2 cut(s) 555, 580
SfuI TTCGAA 1 cut(s) 529
SgrAI CRCCGGYG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 550
SmoI CTYRAG 1 cut(s) 550
Sse9I AATT 5 cut(s) 443, 486, 635, 761, 926
StyD4I CCNGG 1 cut(s) 350
TaaI ACNGT 6 cut(s) 25, 242, 341, 347, 724, 733
TaiI ACGT 2 cut(s) 93, 832
TaqI TCGA 1 cut(s) 529
TasI AATT 5 cut(s) 443, 486, 635, 761, 926
TauI GCSGC 5 cut(s) 77, 87, 196, 326, 632
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 5 cut(s) 257, 419, 447, 791, 903
Tru9I TTAA 5 cut(s) 257, 419, 447, 791, 903
TscAI CASTG 2 cut(s) 12, 729
TseFI GTSAC 5 cut(s) 179, 646, 693, 785, 830
Tsp45I GTSAC 5 cut(s) 179, 646, 693, 785, 830
TspDTI ATGAA 2 cut(s) 456, 549
TspRI CASTG 2 cut(s) 12, 729
XapI RAATTY 3 cut(s) 443, 635, 761
XmnI GAANNNNTTC 1 cut(s) 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.