Rh3DG041000

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000368
Physical Location & Seq
Reverse (-)
2709578 .. 2720592
11015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG041000.1

Sequence Viewer

Length: 285 bp
ATGGTTACAGTTTTGGTGGCTACTCGAGGTGCACCAAAGTTGCCCAGCATTAATGGCCCTGGTGACTTGAAGAAAGCATTACAGAGTCTTGGATCCATTCCCTCGAACCAAATACTGGCGGTTGAGGTCTTGTGGACTCCTCAACAAGAAAATGATACTTTGACTGAGAAGGAACTACTTAAGGATTACCCGCAGTTGAGGGGCTTTTATGATGGAGGGTCACTTGAAGAAGGGCCATATGACGATTCCCACCCGTTCTTAGGCGTTACTGTAGTCAAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

94

Amino Acids

10.18

Weight (kDa)

4.75

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 2 - 67 1.7e-25 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 115
AciI CCGC 2 cut(s) 119, 191
AclWI GGATC 2 cut(s) 87, 100
AfiI CCNNNNNNNGG 2 cut(s) 115, 260
AflII CTTAAG 1 cut(s) 179
AgsI TTSAA 2 cut(s) 70, 227
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 1 cut(s) 282
AluI AGCT 1 cut(s) 282
Alw21I GWGCWC 1 cut(s) 34
Alw44I GTGCAC 1 cut(s) 30
AlwI GGATC 2 cut(s) 87, 100
Ama87I CYCGRG 1 cut(s) 24
AoxI GGCC 2 cut(s) 55, 233
ApaLI GTGCAC 1 cut(s) 30
AseI ATTAAT 1 cut(s) 51
AspS9I GGNCC 2 cut(s) 56, 233
AsuHPI GGTGA 1 cut(s) 74
AvaI CYCGRG 1 cut(s) 24
BaeGI GKGCMC 1 cut(s) 34
BamHI GGATCC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 34
BccI CCATC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 60
BfaI CTAG 1 cut(s) 283
BfmI CTRYAG 1 cut(s) 270
BfrI CTTAAG 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 60
BmeT110I CYCGRG 1 cut(s) 24
BmgT120I GGNCC 2 cut(s) 56, 233
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 58
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 260
Bse1I ACTGG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 58
BseLI CCNNNNNNNGG 2 cut(s) 115, 260
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 120
BseRI GAGGAG 1 cut(s) 129
BseSI GKGCMC 1 cut(s) 34
BseYI CCCAGC 1 cut(s) 44
BshFI GGCC 2 cut(s) 57, 235
BsiHKAI GWGCWC 1 cut(s) 34
BsiHKCI CYCGRG 1 cut(s) 24
BslI CCNNNNNNNGG 2 cut(s) 115, 260
BsnI GGCC 2 cut(s) 57, 235
BsoBI CYCGRG 1 cut(s) 24
Bsp1286I GDGCHC 1 cut(s) 34
Bsp143I GATC 1 cut(s) 92
BspACI CCGC 2 cut(s) 119, 191
BspANI GGCC 2 cut(s) 57, 235
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 94
BspPI GGATC 2 cut(s) 87, 100
BspTI CTTAAG 1 cut(s) 179
BsrI ACTGG 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 1 cut(s) 92
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 2 cut(s) 10, 271
BstAFI CTTAAG 1 cut(s) 179
BstDEI CTNAG 2 cut(s) 165, 259
BstKTI GATC 1 cut(s) 95
BstMBI GATC 1 cut(s) 92
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstSFI CTRYAG 1 cut(s) 270
BstSLI GKGCMC 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BsuRI GGCC 2 cut(s) 57, 235
Cfr13I GGNCC 2 cut(s) 56, 233
CviJI RGCY 5 cut(s) 20, 57, 204, 235, 282
CviKI_1 RGCY 5 cut(s) 20, 57, 204, 235, 282
DdeI CTNAG 2 cut(s) 165, 259
DpnI GATC 1 cut(s) 94
DpnII GATC 1 cut(s) 92
Eco88I CYCGRG 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 58
FaiI YATR 3 cut(s) 210, 238, 240
FauI CCCGC 1 cut(s) 198
FauNDI CATATG 1 cut(s) 238
FspBI CTAG 1 cut(s) 283
GsaI CCCAGC 1 cut(s) 48
HaeIII GGCC 2 cut(s) 57, 235
HinfI GANTC 3 cut(s) 85, 136, 245
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 2 cut(s) 32, 135
Hpy188III TCNNGA 1 cut(s) 277
Hpy8I GTNNAC 2 cut(s) 32, 135
HpyAV CCTTC 2 cut(s) 163, 224
HpyCH4III ACNGT 2 cut(s) 10, 271
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpyF3I CTNAG 2 cut(s) 165, 259
Kzo9I GATC 1 cut(s) 92
LpnPI CCDG 4 cut(s) 45, 58, 72, 101
MaeI CTAG 1 cut(s) 283
MaeIII GTNAC 4 cut(s) 4, 62, 219, 265
MalI GATC 1 cut(s) 94
MboI GATC 1 cut(s) 92
MboII GAAGA 2 cut(s) 82, 239
MflI RGATCY 1 cut(s) 92
MhlI GDGCHC 1 cut(s) 34
MlyI GAGTC 2 cut(s) 94, 130
MnlI CCTC 6 cut(s) 20, 112, 118, 150, 192, 209
MseI TTAA 2 cut(s) 51, 180
MspCI CTTAAG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 54
NdeI CATATG 1 cut(s) 238
NdeII GATC 1 cut(s) 92
NlaIV GGNNCC 1 cut(s) 94
NmuCI GTSAC 2 cut(s) 62, 219
PaeR7I CTCGAG 1 cut(s) 24
PfeI GAWTC 1 cut(s) 245
PflMI CCANNNNNTGG 1 cut(s) 115
PleI GAGTC 2 cut(s) 93, 130
PpsI GAGTC 2 cut(s) 93, 130
PshBI ATTAAT 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 44
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 2 cut(s) 56, 233
PspXI VCTCGAGB 1 cut(s) 24
PsuI RGATCY 1 cut(s) 92
SaqAI TTAA 2 cut(s) 51, 180
Sau3AI GATC 1 cut(s) 92
Sau96I GGNCC 2 cut(s) 56, 233
SchI GAGTC 2 cut(s) 94, 130
ScrFI CCNGG 1 cut(s) 60
SduI GDGCHC 1 cut(s) 34
SetI ASST 3 cut(s) 31, 129, 284
SfcI CTRYAG 1 cut(s) 270
Sfr274I CTCGAG 1 cut(s) 24
SlaI CTCGAG 1 cut(s) 24
SmlI CTYRAG 2 cut(s) 24, 179
SmoI CTYRAG 2 cut(s) 24, 179
SsiI CCGC 2 cut(s) 119, 191
SspMI CTAG 1 cut(s) 283
StyD4I CCNGG 1 cut(s) 58
TaaI ACNGT 2 cut(s) 10, 271
TaqI TCGA 2 cut(s) 25, 104
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 2 cut(s) 51, 180
Tru9I TTAA 2 cut(s) 51, 180
TseFI GTSAC 2 cut(s) 62, 219
Tsp45I GTSAC 2 cut(s) 62, 219
Van91I CCANNNNNTGG 1 cut(s) 115
Vha464I CTTAAG 1 cut(s) 179
VneI GTGCAC 1 cut(s) 30
VspI ATTAAT 1 cut(s) 51
XhoI CTCGAG 1 cut(s) 24
XspI CTAG 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.