Rw3G003060

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000368
Physical Location & Seq
Forward (+)
2721241 .. 2725243
4003 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G003060.1

Sequence Viewer

Length: 1161 bp
ATGGCAATAACTGCTTCTTTGCTCCAACCCAATCCCCTGAAATGGAACCAAACCCACCACCACCCTCACCCTCTTCTCTTCTCCCCTTTCCGCCCCAATATACTCAAACTCAACACCCCGCAATCTTTCAAGCTCAAATGCTCCTCCTCCGAATCCAAACCAGACCTCGTGGCAGTGAAACCGAACCCAATAGAGGTTTTGGCAGATAAGCTCTTGAAGGCTCTCAAGGCGCTGAGGAAGCCCGCAATGGCGGCGGTGTTATTGGGCCTGGTGTTGATGTCCGACCCGAACTCGGCTTTGGCCGCCTCGGGCGGTCGGGTCGGAGGCAAGGCCTTCTCGTCGCGCTCGAATTCTTCGTCATCGTCGAGGAGTTACTCGGTGCCGAGGACGTCGAGGCCGGATTACTCGTACTCTGCGCCGTACTACGCGCCTTCGCCGTTCGGGTTTAGCGGCGGAGGAGGCGGGTTTTATATGGGCCCGGCGGTAGGGGTCGGAGTCGGAGCCGGGTCGAGTTTCTTTCTGATTTTGACGGGTTTTGCGGCGTTTGTTTTGGTTTCGGGTTTTCTTTCGGATCGGTCTGAGGGGAGTGTGCTTACTGCTACTGAGAAAACTACTGTTTTGAAGTTGCAGGTTGGTTTGTTGGGATTGGGGCGAACACTACAGAGGGATCTCGATCGGATTGCCGATACTGCAGATACTTCTACCCCCGAGGGATTGAGCTATGTTCTGACAGAGACAACACTAGCATTGCTTAGGCATCCTGATTATTGCATCTCAGGTTATTCGTCGGTATCTCTGAAGAGAAGCATAGAGGATGCAGAGAAAGGCTTCAATCAACTTTCTATTGAAGAAAGGGGTAAATTTGATGAAGAGACACTTGTCAATGTGAACAGCATAAGAAGGCGGAGCTCAACGAGCCAGAGATCTAATGGATTCCGCAATGAATACATAGTGATAACAATATTGGTGGCTGCTGAAGGAGTGCATAAGTTACCCGCCATCAATGGCAGCGGTGACTTGAAGGAAGCATTGCAAAAGCTCGCATCCATTCCGTCGAACAAGATATTAGCAGTAGAGGTGTTGTGGACTCCTCAGAATGAAAATGACACACTGTCGGAGCGTGAACTACTTGAAGATTACCCGCTTCTGAGGCCTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

386

Amino Acids

41.61

Weight (kDa)

9.15

Isoelectric Point (pI)

54.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 204 - 386 5.7e-70 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 392
Acc36I ACCTGC 1 cut(s) 619
AccB1I GGYRCC 1 cut(s) 379
AccII CGCG 2 cut(s) 343, 428
AclWI GGATC 2 cut(s) 579, 675
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 2 cut(s) 349, 860
AcuI CTGAAG 2 cut(s) 818, 996
AcyI GRCGYC 1 cut(s) 389
AfaI GTAC 2 cut(s) 410, 422
AfiI CCNNNNNNNGG 4 cut(s) 42, 193, 292, 485
AgsI TTSAA 7 cut(s) 130, 217, 622, 832, 848, 1021, 1133
AhdI GACNNNNNGTC 1 cut(s) 1111
AjnI CCWGG 1 cut(s) 267
AjuI GAANNNNNNNTTGG 2 cut(s) 281, 313
AluBI AGCT 5 cut(s) 133, 211, 720, 909, 1039
AluI AGCT 5 cut(s) 133, 211, 720, 909, 1039
Alw21I GWGCWC 1 cut(s) 911
Alw26I GTCTC 2 cut(s) 728, 866
AlwI GGATC 2 cut(s) 579, 675
Ama87I CYCGRG 2 cut(s) 307, 707
AoxI GGCC 6 cut(s) 265, 300, 330, 395, 475, 1151
ApaI GGGCCC 1 cut(s) 479
ApeKI GCWGC 2 cut(s) 971, 1008
ApoI RAATTY 2 cut(s) 349, 860
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
Asp700I GAANNNNTTC 1 cut(s) 827
AspLEI GCGC 4 cut(s) 232, 345, 418, 430
AspS9I GGNCC 3 cut(s) 265, 475, 476
AsuC2I CCSGG 2 cut(s) 479, 505
AsuHPI GGTGA 2 cut(s) 59, 1025
AvaI CYCGRG 2 cut(s) 307, 707
BaeGI GKGCMC 1 cut(s) 479
BanI GGYRCC 1 cut(s) 379
BanII GRGCYC 2 cut(s) 479, 911
BauI CACGAG 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 911
BbvCI CCTCAGC 1 cut(s) 233
BbvI GCAGC 2 cut(s) 958, 1020
BccI CCATC 1 cut(s) 1007
BceAI ACGGC 2 cut(s) 403, 421
BcgI CGANNNNNNTGC 2 cut(s) 662, 696
BciT130I CCWGG 1 cut(s) 269
BcnI CCSGG 2 cut(s) 479, 505
BcoDI GTCTC 2 cut(s) 728, 866
BfaI CTAG 1 cut(s) 743
BfmI CTRYAG 2 cut(s) 659, 690
BfoI RGCGCY 1 cut(s) 233
BfuAI ACCTGC 1 cut(s) 619
BglII AGATCT 1 cut(s) 923
BisI GCNGC 6 cut(s) 252, 303, 451, 540, 972, 1009
BlsI GCNGC 6 cut(s) 253, 304, 452, 541, 973, 1010
Bme1390I CCNGG 3 cut(s) 269, 479, 505
BmeRI GACNNNNNGTC 1 cut(s) 1111
BmeT110I CYCGRG 2 cut(s) 307, 707
BmgT120I GGNCC 3 cut(s) 265, 475, 476
BmiI GGNNCC 4 cut(s) 47, 381, 477, 502
BmrFI CCNGG 3 cut(s) 269, 479, 505
BmsI GCATC 4 cut(s) 766, 780, 805, 1052
BoxI GACNNNNGTC 1 cut(s) 878
Bpu10I CCTNAGC 2 cut(s) 233, 752
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 2 cut(s) 479, 505
BsaBI GATNNNNATC 1 cut(s) 672
BsaHI GRCGYC 1 cut(s) 389
BsaJI CCNNGG 3 cut(s) 306, 383, 708
Bsc4I CCNNNNNNNGG 4 cut(s) 42, 193, 292, 485
Bse3DI GCAATG 4 cut(s) 252, 746, 946, 1028
Bse8I GATNNNNATC 1 cut(s) 672
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 3 cut(s) 306, 383, 708
BseGI GGATG 3 cut(s) 757, 820, 1043
BseJI GATNNNNATC 1 cut(s) 672
BseLI CCNNNNNNNGG 4 cut(s) 42, 193, 292, 485
BseMI GCAATG 4 cut(s) 252, 746, 946, 1028
BseMII CTCAG 6 cut(s) 224, 570, 594, 789, 1106, 1139
BseRI GAGGAG 5 cut(s) 133, 136, 382, 471, 1080
BseSI GKGCMC 1 cut(s) 479
BseXI GCAGC 2 cut(s) 958, 1020
Bsh1236I CGCG 2 cut(s) 343, 428
Bsh1285I CGRYCG 2 cut(s) 316, 676
BshFI GGCC 6 cut(s) 267, 302, 332, 397, 477, 1153
BshNI GGYRCC 1 cut(s) 379
BsiEI CGRYCG 2 cut(s) 316, 676
BsiHKAI GWGCWC 1 cut(s) 911
BsiHKCI CYCGRG 2 cut(s) 307, 707
BsiSI CCGG 3 cut(s) 398, 479, 504
BslI CCNNNNNNNGG 4 cut(s) 42, 193, 292, 485
BsmAI GTCTC 2 cut(s) 728, 866
BsnI GGCC 6 cut(s) 267, 302, 332, 397, 477, 1153
BsoBI CYCGRG 2 cut(s) 307, 707
Bsp120I GGGCCC 1 cut(s) 475
Bsp1286I GDGCHC 2 cut(s) 479, 911
Bsp143I GATC 4 cut(s) 571, 667, 673, 923
BspANI GGCC 6 cut(s) 267, 302, 332, 397, 477, 1153
BspCNI CTCAG 6 cut(s) 225, 571, 595, 788, 1105, 1140
BspFNI CGCG 2 cut(s) 343, 428
BspLI GGNNCC 4 cut(s) 47, 381, 477, 502
BspMAI CTGCAG 1 cut(s) 694
BspMI ACCTGC 1 cut(s) 619
BspPI GGATC 2 cut(s) 579, 675
BspT107I GGYRCC 1 cut(s) 379
BsrDI GCAATG 4 cut(s) 252, 746, 946, 1028
BssECI CCNNGG 3 cut(s) 306, 383, 708
BssMI GATC 4 cut(s) 571, 667, 673, 923
BssNI GRCGYC 1 cut(s) 389
BssSI CACGAG 1 cut(s) 167
Bst2BI CACGAG 1 cut(s) 167
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 2 cut(s) 616, 1113
Bst6I CTCTTC 4 cut(s) 78, 83, 794, 864
BstACI GRCGYC 1 cut(s) 389
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 243, 1041
BstDEI CTNAG 7 cut(s) 233, 579, 603, 752, 775, 1092, 1148
BstF5I GGATG 3 cut(s) 757, 820, 1043
BstFNI CGCG 2 cut(s) 343, 428
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 4 cut(s) 232, 345, 418, 430
BstKTI GATC 4 cut(s) 574, 670, 676, 926
BstMAI GTCTC 2 cut(s) 728, 866
BstMBI GATC 4 cut(s) 571, 667, 673, 923
BstMCI CGRYCG 2 cut(s) 316, 676
BstMWI GCNNNNNNNGC 9 cut(s) 11, 227, 238, 251, 302, 459, 689, 915, 1150
BstNI CCWGG 1 cut(s) 269
BstPAI GACNNNNGTC 1 cut(s) 878
BstSCI CCNGG 3 cut(s) 267, 477, 503
BstSFI CTRYAG 2 cut(s) 659, 690
BstSLI GKGCMC 1 cut(s) 479
BstUI CGCG 2 cut(s) 343, 428
BstV1I GCAGC 2 cut(s) 958, 1020
BstX2I RGATCY 2 cut(s) 667, 923
BstYI RGATCY 2 cut(s) 667, 923
BsuRI GGCC 6 cut(s) 267, 302, 332, 397, 477, 1153
BtsCI GGATG 3 cut(s) 757, 820, 1043
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 2 cut(s) 180, 1109
BveI ACCTGC 1 cut(s) 619
Cac8I GCNNGC 2 cut(s) 243, 1041
CfoI GCGC 4 cut(s) 232, 345, 418, 430
Cfr13I GGNCC 3 cut(s) 265, 475, 476
Csp6I GTAC 2 cut(s) 409, 421
CspCI CAANNNNNGTGG 2 cut(s) 948, 983
CviQI GTAC 2 cut(s) 409, 421
DdeI CTNAG 7 cut(s) 233, 579, 603, 752, 775, 1092, 1148
DpnI GATC 4 cut(s) 573, 669, 675, 925
DpnII GATC 4 cut(s) 571, 667, 673, 923
DriI GACNNNNNGTC 1 cut(s) 1111
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 4 cut(s) 78, 83, 794, 864
Eam1105I GACNNNNNGTC 1 cut(s) 1111
EarI CTCTTC 4 cut(s) 78, 83, 794, 864
EciI GGCGGA 3 cut(s) 80, 468, 919
Ecl136II GAGCTC 1 cut(s) 909
Eco147I AGGCCT 2 cut(s) 332, 1153
Eco24I GRGCYC 2 cut(s) 479, 911
Eco53kI GAGCTC 1 cut(s) 909
Eco57I CTGAAG 2 cut(s) 818, 996
Eco88I CYCGRG 2 cut(s) 307, 707
EcoICRI GAGCTC 1 cut(s) 909
EcoRI GAATTC 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 267
EcoT38I GRGCYC 2 cut(s) 479, 911
FaiI YATR 8 cut(s) 101, 471, 473, 723, 809, 896, 950, 987
FalI AAGNNNNNCTT 2 cut(s) 861, 893
FauI CCCGC 5 cut(s) 126, 250, 455, 1003, 1149
Fnu4HI GCNGC 6 cut(s) 252, 303, 451, 540, 972, 1009
FokI GGATG 3 cut(s) 744, 827, 1030
FriOI GRGCYC 2 cut(s) 479, 911
Fsp4HI GCNGC 6 cut(s) 252, 303, 451, 540, 972, 1009
FspBI CTAG 1 cut(s) 743
GlaI GCGC 4 cut(s) 231, 344, 417, 429
GluI GCNGC 6 cut(s) 252, 303, 451, 540, 972, 1009
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 6 cut(s) 267, 302, 332, 397, 477, 1153
HapII CCGG 3 cut(s) 398, 479, 504
HhaI GCGC 4 cut(s) 232, 345, 418, 430
Hin1I GRCGYC 1 cut(s) 389
Hin6I GCGC 4 cut(s) 230, 343, 416, 428
HinP1I GCGC 4 cut(s) 230, 343, 416, 428
HinfI GANTC 4 cut(s) 152, 495, 933, 1087
HpaII CCGG 3 cut(s) 398, 479, 504
HphI GGTGA 2 cut(s) 59, 1025
Hpy166II GTNNAC 3 cut(s) 889, 1086, 1124
Hpy188III TCNNGA 3 cut(s) 214, 671, 761
Hpy8I GTNNAC 3 cut(s) 889, 1086, 1124
Hpy99I CGWCG 5 cut(s) 343, 367, 394, 790, 1057
HpyAV CCTTC 6 cut(s) 211, 343, 441, 894, 971, 1015
HpyCH4III ACNGT 2 cut(s) 616, 1113
HpyCH4IV ACGT 1 cut(s) 389
HpyCH4V TGCA 6 cut(s) 628, 692, 771, 818, 985, 1033
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 227, 238, 251, 302, 459, 689, 915, 1150
HpyF3I CTNAG 7 cut(s) 233, 579, 603, 752, 775, 1092, 1148
HpySE526I ACGT 1 cut(s) 389
Hsp92I GRCGYC 1 cut(s) 389
HspAI GCGC 4 cut(s) 230, 343, 416, 428
Kzo9I GATC 4 cut(s) 571, 667, 673, 923
LmnI GCTCC 5 cut(s) 27, 146, 500, 906, 1117
Lsp1109I GCAGC 2 cut(s) 958, 1020
LweI GCATC 4 cut(s) 766, 780, 805, 1052
MaeI CTAG 1 cut(s) 743
MaeII ACGT 1 cut(s) 389
MaeIII GTNAC 3 cut(s) 371, 990, 1013
MalI GATC 4 cut(s) 573, 669, 675, 925
MboI GATC 4 cut(s) 571, 667, 673, 923
MboII GAAGA 7 cut(s) 65, 70, 345, 811, 860, 881, 1145
MflI RGATCY 2 cut(s) 667, 923
MhlI GDGCHC 2 cut(s) 479, 911
MluCI AATT 2 cut(s) 349, 860
MlyI GAGTC 2 cut(s) 504, 1081
MmeI TCCRAC 6 cut(s) 49, 301, 306, 472, 478, 1095
MroXI GAANNNNTTC 1 cut(s) 827
MspA1I CMGCKG 1 cut(s) 1011
MspI CCGG 3 cut(s) 398, 479, 504
MspR9I CCNGG 3 cut(s) 269, 479, 505
MvaI CCWGG 1 cut(s) 269
MvnI CGCG 2 cut(s) 343, 428
MwoI GCNNNNNNNGC 9 cut(s) 11, 227, 238, 251, 302, 459, 689, 915, 1150
NciI CCSGG 2 cut(s) 479, 505
NdeII GATC 4 cut(s) 571, 667, 673, 923
NlaIV GGNNCC 4 cut(s) 47, 381, 477, 502
NmeAIII GCCGAG 2 cut(s) 272, 408
NmuCI GTSAC 1 cut(s) 1013
PceI AGGCCT 2 cut(s) 332, 1153
PcsI WCGNNNNNNNCGW 3 cut(s) 344, 353, 362
PdmI GAANNNNTTC 1 cut(s) 827
PfeI GAWTC 2 cut(s) 152, 933
PkrI GCNGC 6 cut(s) 253, 304, 452, 541, 973, 1010
Ple19I CGATCG 1 cut(s) 676
PleI GAGTC 2 cut(s) 503, 1081
PpsI GAGTC 2 cut(s) 503, 1081
PshAI GACNNNNGTC 1 cut(s) 878
Psp124BI GAGCTC 1 cut(s) 911
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 4 cut(s) 47, 381, 477, 502
PspOMI GGGCCC 1 cut(s) 475
PspPI GGNCC 3 cut(s) 265, 475, 476
PstI CTGCAG 1 cut(s) 694
PsuI RGATCY 2 cut(s) 667, 923
PvuI CGATCG 1 cut(s) 676
RsaI GTAC 2 cut(s) 410, 422
RsaNI GTAC 2 cut(s) 409, 421
SacI GAGCTC 1 cut(s) 911
SatI GCNGC 6 cut(s) 252, 303, 451, 540, 972, 1009
Sau3AI GATC 4 cut(s) 571, 667, 673, 923
Sau96I GGNCC 3 cut(s) 265, 475, 476
SchI GAGTC 2 cut(s) 504, 1081
ScrFI CCNGG 3 cut(s) 269, 479, 505
SduI GDGCHC 2 cut(s) 479, 911
SfaNI GCATC 4 cut(s) 766, 780, 805, 1052
SfcI CTRYAG 2 cut(s) 659, 690
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 2 cut(s) 349, 860
SseBI AGGCCT 2 cut(s) 332, 1153
SspI AATATT 1 cut(s) 963
SspMI CTAG 1 cut(s) 743
SstI GAGCTC 1 cut(s) 911
StuI AGGCCT 2 cut(s) 332, 1153
StyD4I CCNGG 3 cut(s) 267, 477, 503
TaaI ACNGT 2 cut(s) 616, 1113
TaiI ACGT 1 cut(s) 392
TaqI TCGA 6 cut(s) 347, 365, 392, 509, 672, 1055
TaqII GACCGA 1 cut(s) 564
TasI AATT 2 cut(s) 349, 860
TauI GCSGC 4 cut(s) 254, 305, 453, 542
TfiI GAWTC 2 cut(s) 152, 933
TscAI CASTG 2 cut(s) 180, 1116
TseFI GTSAC 1 cut(s) 1013
TseI GCWGC 2 cut(s) 971, 1008
Tsp45I GTSAC 1 cut(s) 1013
TspDTI ATGAA 3 cut(s) 882, 957, 1113
TspGWI ACGGA 1 cut(s) 1041
TspRI CASTG 2 cut(s) 180, 1116
XapI RAATTY 2 cut(s) 349, 860
XcmI CCANNNNNNNNNTGG 1 cut(s) 926
XmnI GAANNNNTTC 1 cut(s) 827
XspI CTAG 1 cut(s) 743
ZraI GACGTC 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.