Rmu_co8213316.1_g000001

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8213316.1
OG0000368
Physical Location & Seq
Forward (+)
1 .. 400
400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8213316.1_g000001.1.cds

Sequence Viewer

Length: 207 bp
ataacaatattggtggctgctgaaggagtgcataagttacccgccatcaatggcagcggtgacttgaaggaagcattgcaaaagctcgcatccattccgtcgaacaagatattagcagtagaggtgttgtggactcctcagaatgaaaatgacacactgtcggagcgtgaactacttgaagattacccgcttctgaggcctttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

68

Amino Acids

7.46

Weight (kDa)

4.72

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 42, 57, 188
AcuI CTGAAG 1 cut(s) 42
AgsI TTSAA 2 cut(s) 67, 179
AhdI GACNNNNNGTC 1 cut(s) 157
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
AoxI GGCC 1 cut(s) 197
ApeKI GCWGC 2 cut(s) 17, 54
AsuHPI GGTGA 1 cut(s) 71
BbvI GCAGC 2 cut(s) 4, 66
BccI CCATC 1 cut(s) 53
BisI GCNGC 2 cut(s) 18, 55
BlsI GCNGC 2 cut(s) 19, 56
BmeRI GACNNNNNGTC 1 cut(s) 157
BmsI GCATC 1 cut(s) 98
Bse3DI GCAATG 1 cut(s) 74
BseGI GGATG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 74
BseMII CTCAG 2 cut(s) 152, 185
BseRI GAGGAG 1 cut(s) 126
BseXI GCAGC 2 cut(s) 4, 66
BshFI GGCC 1 cut(s) 199
BsnI GGCC 1 cut(s) 199
BspACI CCGC 3 cut(s) 42, 57, 188
BspANI GGCC 1 cut(s) 199
BspCNI CTCAG 2 cut(s) 151, 186
BsrDI GCAATG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 2 cut(s) 138, 194
BstF5I GGATG 1 cut(s) 89
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstV1I GCAGC 2 cut(s) 4, 66
BsuRI GGCC 1 cut(s) 199
BtsCI GGATG 1 cut(s) 89
BtsIMutI CAGTG 1 cut(s) 155
Cac8I GCNNGC 1 cut(s) 87
CspCI CAANNNNNGTGG 1 cut(s) 29
CviJI RGCY 3 cut(s) 17, 85, 199
CviKI_1 RGCY 3 cut(s) 17, 85, 199
DdeI CTNAG 2 cut(s) 138, 194
DriI GACNNNNNGTC 1 cut(s) 157
Eam1105I GACNNNNNGTC 1 cut(s) 157
Eco147I AGGCCT 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 42
FaiI YATR 1 cut(s) 33
FauI CCCGC 2 cut(s) 49, 195
Fnu4HI GCNGC 2 cut(s) 18, 55
FokI GGATG 1 cut(s) 76
Fsp4HI GCNGC 2 cut(s) 18, 55
GluI GCNGC 2 cut(s) 18, 55
HaeIII GGCC 1 cut(s) 199
HinfI GANTC 1 cut(s) 133
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 2 cut(s) 132, 170
Hpy188I TCNGA 3 cut(s) 141, 163, 195
Hpy8I GTNNAC 2 cut(s) 132, 170
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 2 cut(s) 17, 61
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4V TGCA 2 cut(s) 31, 79
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpyF3I CTNAG 2 cut(s) 138, 194
LmnI GCTCC 1 cut(s) 163
Lsp1109I GCAGC 2 cut(s) 4, 66
LweI GCATC 1 cut(s) 98
MaeIII GTNAC 2 cut(s) 36, 59
MboII GAAGA 1 cut(s) 191
MlyI GAGTC 1 cut(s) 127
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 3 cut(s) 115, 147, 189
MspA1I CMGCKG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 59
PceI AGGCCT 1 cut(s) 199
PkrI GCNGC 2 cut(s) 19, 56
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
SatI GCNGC 2 cut(s) 18, 55
SchI GAGTC 1 cut(s) 127
SetI ASST 2 cut(s) 87, 126
SfaNI GCATC 1 cut(s) 98
SgeI CNNG 7 cut(s) 53, 76, 98, 118, 179, 188, 199
SseBI AGGCCT 1 cut(s) 199
SsiI CCGC 3 cut(s) 42, 57, 188
SspI AATATT 1 cut(s) 9
StuI AGGCCT 1 cut(s) 199
TaaI ACNGT 1 cut(s) 159
TaqI TCGA 1 cut(s) 101
TscAI CASTG 1 cut(s) 162
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 2 cut(s) 17, 54
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 159
TspGWI ACGGA 1 cut(s) 87
TspRI CASTG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.