RchiOBHm_Chr3g0451981

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000368
Physical Location & Seq
Reverse (-)
2826818 .. 2829116
2299 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41919

Sequence Viewer

Length: 501 bp
ATGATTCCGCTCCTCCTCCGCAGAGGAGAAGAGCCACCTTTCTTGTTCTTCACCATCTTTCTCTTCTTTGTCATCGTTTTCTTCTTCTCCGCTGCTCGGGCGCGTGGGTGGAACCCTCCCGTGGCTGTCACCCGACCCACCACCAGAGATAATGTTCTTAATTATGTGCTTAGGCTTACATTTGAAGAAGAGACGTTTGTCAATGTAAACAACATCAAAACGCAGAATTTGGCAAGCCAAAGAGCTAATGGAATCCACAATCAATATATAGTGGTTACAATATTGTTGGCAATTGAAGGAAAATATATGTTACCCAGCATCAATAGCAGTCCTGAGTTGAAGGAAGCACTGCAGAAACTTTCATCTATTAATCGAAAGACTAGTAAGAACAGACTTGAACTAGTTCGGGCAGTTGAAGTGTTGTGGACTCCTCAGAATGAAACAAACACTCTGTTAGAGGAGCAACTGCTTAAAAGTTACCCACACTTGAAGCACTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

166

Amino Acids

19.25

Weight (kDa)

9.69

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 58 - 165 3.1e-27 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 10
AccII CGCG 1 cut(s) 103
AciI CCGC 3 cut(s) 8, 19, 90
AcsI RAATTY 1 cut(s) 226
AfiI CCNNNNNNNGG 2 cut(s) 96, 121
AgsI TTSAA 6 cut(s) 185, 296, 340, 398, 416, 490
AhlI ACTAGT 2 cut(s) 380, 400
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 185
Ama87I CYCGRG 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 92
ApoI RAATTY 1 cut(s) 226
AseI ATTAAT 1 cut(s) 369
Asp700I GAANNNNTTC 1 cut(s) 402
AspLEI GCGC 1 cut(s) 103
AsuHPI GGTGA 2 cut(s) 43, 121
AvaI CYCGRG 1 cut(s) 96
BbvI GCAGC 1 cut(s) 79
BccI CCATC 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 185
BcuI ACTAGT 2 cut(s) 380, 400
BfaI CTAG 2 cut(s) 381, 401
BfmI CTRYAG 1 cut(s) 350
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 113
BmsI GCATC 1 cut(s) 327
BoxI GACNNNNGTC 1 cut(s) 197
Bpu10I CCTNAGC 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 120
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 121
BseDI CCNNGG 1 cut(s) 120
BseLI CCNNNNNNNGG 2 cut(s) 96, 121
BseMII CTCAG 2 cut(s) 324, 446
BseRI GAGGAG 4 cut(s) 5, 39, 420, 473
BseXI GCAGC 1 cut(s) 79
BseYI CCCAGC 1 cut(s) 314
Bsh1236I CGCG 1 cut(s) 103
BsiHKCI CYCGRG 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 96, 121
BsmAI GTCTC 1 cut(s) 185
BsmBI CGTCTC 1 cut(s) 185
BsoBI CYCGRG 1 cut(s) 96
BspACI CCGC 3 cut(s) 8, 19, 90
BspCNI CTCAG 2 cut(s) 325, 445
BspFNI CGCG 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 113
BspMAI CTGCAG 1 cut(s) 354
BspQI GCTCTTC 1 cut(s) 24
BsrBI CCGCTC 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 120
Bst6I CTCTTC 3 cut(s) 24, 68, 183
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 3 cut(s) 170, 333, 432
BstDSI CCRYGG 1 cut(s) 120
BstFNI CGCG 1 cut(s) 103
BstHHI GCGC 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 185
BstMWI GCNNNNNNNGC 2 cut(s) 98, 324
BstPAI GACNNNNGTC 1 cut(s) 197
BstSFI CTRYAG 1 cut(s) 350
BstUI CGCG 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 79
BtgI CCRYGG 1 cut(s) 120
BtsI GCAGTG 1 cut(s) 347
BtsIMutI CAGTG 1 cut(s) 347
Cac8I GCNNGC 1 cut(s) 235
CfoI GCGC 1 cut(s) 103
CspCI CAANNNNNGTGG 2 cut(s) 24, 59
CviJI RGCY 5 cut(s) 34, 125, 175, 237, 245
CviKI_1 RGCY 5 cut(s) 34, 125, 175, 237, 245
DdeI CTNAG 3 cut(s) 170, 333, 432
Eam1104I CTCTTC 3 cut(s) 24, 68, 183
EarI CTCTTC 3 cut(s) 24, 68, 183
Eco88I CYCGRG 1 cut(s) 96
Esp3I CGTCTC 1 cut(s) 185
FaiI YATR 5 cut(s) 165, 267, 269, 306, 308
Fnu4HI GCNGC 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 2 cut(s) 381, 401
GlaI GCGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 93
GsaI CCCAGC 1 cut(s) 318
HhaI GCGC 1 cut(s) 103
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HinfI GANTC 3 cut(s) 4, 252, 427
HphI GGTGA 2 cut(s) 43, 121
Hpy166II GTNNAC 2 cut(s) 208, 426
Hpy188I TCNGA 1 cut(s) 435
Hpy188III TCNNGA 1 cut(s) 332
Hpy8I GTNNAC 2 cut(s) 208, 426
HpyAV CCTTC 2 cut(s) 290, 334
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 1 cut(s) 352
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 324
HpyF3I CTNAG 3 cut(s) 170, 333, 432
HpySE526I ACGT 1 cut(s) 194
HspAI GCGC 1 cut(s) 101
LguI GCTCTTC 1 cut(s) 24
LmnI GCTCC 2 cut(s) 15, 460
LpnPI CCDG 3 cut(s) 157, 328, 345
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 1 cut(s) 327
MaeI CTAG 2 cut(s) 381, 401
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 4 cut(s) 127, 274, 309, 476
MbiI CCGCTC 1 cut(s) 10
MboII GAAGA 7 cut(s) 40, 41, 55, 73, 76, 197, 200
MfeI CAATTG 1 cut(s) 291
MluCI AATT 3 cut(s) 160, 226, 291
MlyI GAGTC 1 cut(s) 421
MnlI CCTC 6 cut(s) 17, 23, 26, 126, 441, 451
MroXI GAANNNNTTC 1 cut(s) 402
MseI TTAA 3 cut(s) 159, 369, 471
MspA1I CMGCKG 1 cut(s) 92
MunI CAATTG 1 cut(s) 291
MvnI CGCG 1 cut(s) 103
MwoI GCNNNNNNNGC 2 cut(s) 98, 324
NlaIV GGNNCC 1 cut(s) 113
NmuCI GTSAC 1 cut(s) 127
PciSI GCTCTTC 1 cut(s) 24
PdmI GAANNNNTTC 1 cut(s) 402
PfeI GAWTC 2 cut(s) 4, 252
PkrI GCNGC 1 cut(s) 94
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
PshAI GACNNNNGTC 1 cut(s) 197
PshBI ATTAAT 1 cut(s) 369
PspFI CCCAGC 1 cut(s) 314
PspN4I GGNNCC 1 cut(s) 113
PstI CTGCAG 1 cut(s) 354
SapI GCTCTTC 1 cut(s) 24
SaqAI TTAA 3 cut(s) 159, 369, 471
SatI GCNGC 1 cut(s) 93
SchI GAGTC 1 cut(s) 421
SetI ASST 3 cut(s) 40, 197, 247
SfaNI GCATC 1 cut(s) 327
SfcI CTRYAG 1 cut(s) 350
SpeI ACTAGT 2 cut(s) 380, 400
Sse9I AATT 3 cut(s) 160, 226, 291
SsiI CCGC 3 cut(s) 8, 19, 90
SspI AATATT 1 cut(s) 282
SspMI CTAG 2 cut(s) 381, 401
TaiI ACGT 1 cut(s) 197
TaqI TCGA 1 cut(s) 373
TasI AATT 3 cut(s) 160, 226, 291
TfiI GAWTC 2 cut(s) 4, 252
Tru1I TTAA 3 cut(s) 159, 369, 471
Tru9I TTAA 3 cut(s) 159, 369, 471
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 351, 453
TspRI CASTG 1 cut(s) 354
VspI ATTAAT 1 cut(s) 369
XapI RAATTY 1 cut(s) 226
XcmI CCANNNNNNNNNTGG 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 402
XspI CTAG 2 cut(s) 381, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.