Rw3G002990

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000368
Physical Location & Seq
Reverse (-)
2627462 .. 2629603
2142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G002990.1

Sequence Viewer

Length: 525 bp
ATGGCTCTCCGTCAACTTTTTATCCAAGGAACATACTTGAGGTTATCGCCTATAAGATTTTTAAAAGCTCTCAGGGTGTTTAGGAGACTCACAATGGCAGCCGTACTGTTGTGTTTTTTGTTGATGTATCATTTGAATCCAACATTGGCTGCCTCAGGTGGATCGGTCGGCGGAGATTCTTGTCCTTCGAAAACGAATTCGCCCGAGGAGCGTAAAGGTCAGGCAGTTTTTTGTTTGTTGATTATGGGGGCAATTGTGGTGTTGGCATTTACATGTTCATCAAGATCTACTGCCACTGTTGTCAAGCTTCAGGTTGGTCTGTTGAGCACAGCGCGAACACTCCTAAAGGATCTTGATCAGATAGCTGAAACTGCAGATACGTCTACTCGCAAGGATTTGAGCCGTGTTTTGACAGAGGCAACAGCAGCTTTGCTTCGCCATCCTCATCATTGTATCTCAGGCTATTCTTCTACAATGTATAAGCTCTTTAGTTTTTCTTTTTCTTTGATTCAATTTAATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

174

Amino Acids

19.12

Weight (kDa)

9.71

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 98 - 158 3.1e-17 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 383
AccII CGCG 1 cut(s) 334
AciI CCGC 1 cut(s) 171
AclWI GGATC 2 cut(s) 169, 357
AcsI RAATTY 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 293
AfaI GTAC 1 cut(s) 105
AflIII ACRYGT 1 cut(s) 272
AgsI TTSAA 2 cut(s) 136, 512
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AluBI AGCT 5 cut(s) 68, 307, 365, 428, 484
AluI AGCT 5 cut(s) 68, 307, 365, 428, 484
Alw21I GWGCWC 1 cut(s) 329
Alw26I GTCTC 1 cut(s) 79
AlwI GGATC 2 cut(s) 169, 357
Ama87I CYCGRG 1 cut(s) 203
ApeKI GCWGC 3 cut(s) 98, 149, 425
ApoI RAATTY 1 cut(s) 196
AspLEI GCGC 1 cut(s) 334
AsuII TTCGAA 1 cut(s) 188
AvaI CYCGRG 1 cut(s) 203
AxyI CCTNAGG 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 329
BbvI GCAGC 3 cut(s) 110, 136, 437
BccI CCATC 1 cut(s) 447
BceAI ACGGC 2 cut(s) 86, 387
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 1 cut(s) 523
BfmI CTRYAG 1 cut(s) 372
BglII AGATCT 1 cut(s) 284
BisI GCNGC 3 cut(s) 99, 150, 426
BlsI GCNGC 3 cut(s) 100, 151, 427
BmeT110I CYCGRG 1 cut(s) 203
Bpu14I TTCGAA 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 58
BsaBI GATNNNNATC 1 cut(s) 354
BsaJI CCNNGG 2 cut(s) 25, 204
Bse21I CCTNAGG 1 cut(s) 154
Bse8I GATNNNNATC 1 cut(s) 354
BseDI CCNNGG 2 cut(s) 25, 204
BseGI GGATG 1 cut(s) 439
BseJI GATNNNNATC 1 cut(s) 354
BseMII CTCAG 3 cut(s) 85, 168, 471
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 3 cut(s) 110, 136, 437
Bsh1236I CGCG 1 cut(s) 334
Bsh1285I CGRYCG 1 cut(s) 168
BsiEI CGRYCG 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 329
BsiHKCI CYCGRG 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 79
BsoBI CYCGRG 1 cut(s) 203
Bsp119I TTCGAA 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 329
Bsp143I GATC 4 cut(s) 161, 284, 349, 355
BspACI CCGC 1 cut(s) 171
BspCNI CTCAG 3 cut(s) 84, 167, 470
BspFNI CGCG 1 cut(s) 334
BspMAI CTGCAG 1 cut(s) 376
BspPI GGATC 2 cut(s) 169, 357
BspT104I TTCGAA 1 cut(s) 188
BssECI CCNNGG 2 cut(s) 25, 204
BssMI GATC 4 cut(s) 161, 284, 349, 355
BssT1I CCWWGG 1 cut(s) 25
Bst4CI ACNGT 2 cut(s) 108, 298
BstBI TTCGAA 1 cut(s) 188
BstDEI CTNAG 3 cut(s) 71, 154, 457
BstF5I GGATG 1 cut(s) 439
BstFNI CGCG 1 cut(s) 334
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 4 cut(s) 164, 287, 352, 358
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 4 cut(s) 161, 284, 349, 355
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 3 cut(s) 208, 371, 425
BstNSI RCATGY 1 cut(s) 276
BstSFI CTRYAG 1 cut(s) 372
BstUI CGCG 1 cut(s) 334
BstV1I GCAGC 3 cut(s) 110, 136, 437
BstX2I RGATCY 2 cut(s) 284, 349
BstYI RGATCY 2 cut(s) 284, 349
Bsu36I CCTNAGG 1 cut(s) 154
BtsCI GGATG 1 cut(s) 439
BtsIMutI CAGTG 1 cut(s) 294
CfoI GCGC 1 cut(s) 334
Csp6I GTAC 1 cut(s) 104
CviAII CATG 1 cut(s) 273
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 3 cut(s) 71, 154, 457
DpnI GATC 4 cut(s) 163, 286, 351, 357
DpnII GATC 4 cut(s) 161, 284, 349, 355
DraI TTTAAA 1 cut(s) 63
EciI GGCGGA 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 293
Eco81I CCTNAGG 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 203
EcoRI GAATTC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 1 cut(s) 276
FaiI YATR 5 cut(s) 34, 53, 245, 274, 480
FatI CATG 1 cut(s) 272
FbaI TGATCA 1 cut(s) 355
FblI GTMKAC 1 cut(s) 383
Fnu4HI GCNGC 3 cut(s) 99, 150, 426
FokI GGATG 1 cut(s) 426
Fsp4HI GCNGC 3 cut(s) 99, 150, 426
FspBI CTAG 1 cut(s) 523
GlaI GCGC 1 cut(s) 333
GluI GCNGC 3 cut(s) 99, 150, 426
HhaI GCGC 1 cut(s) 334
Hin1II CATG 1 cut(s) 276
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HincII GTYRAC 1 cut(s) 14
HindII GTYRAC 1 cut(s) 14
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 4 cut(s) 87, 136, 176, 508
Hpy166II GTNNAC 2 cut(s) 14, 384
Hpy188I TCNGA 1 cut(s) 360
Hpy188III TCNNGA 2 cut(s) 282, 353
Hpy8I GTNNAC 2 cut(s) 14, 384
HpyAV CCTTC 1 cut(s) 195
HpyCH4III ACNGT 2 cut(s) 108, 298
HpyCH4IV ACGT 1 cut(s) 380
HpyCH4V TGCA 1 cut(s) 374
HpyF10VI GCNNNNNNNGC 3 cut(s) 208, 371, 425
HpyF3I CTNAG 3 cut(s) 71, 154, 457
HpySE526I ACGT 1 cut(s) 380
Hsp92II CATG 1 cut(s) 276
HspAI GCGC 1 cut(s) 332
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 4 cut(s) 161, 284, 349, 355
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 5 cut(s) 58, 141, 206, 296, 444
Lsp1109I GCAGC 3 cut(s) 110, 136, 437
MaeI CTAG 1 cut(s) 523
MaeII ACGT 1 cut(s) 380
MalI GATC 4 cut(s) 163, 286, 351, 357
MboI GATC 4 cut(s) 161, 284, 349, 355
MboII GAAGA 1 cut(s) 459
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 2 cut(s) 284, 349
MhlI GDGCHC 1 cut(s) 329
MluCI AATT 3 cut(s) 196, 252, 512
MlyI GAGTC 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 164
MnlI CCTC 5 cut(s) 33, 163, 199, 409, 453
MseI TTAA 2 cut(s) 62, 516
MslI CAYNNNNRTG 1 cut(s) 271
MunI CAATTG 1 cut(s) 252
MvnI CGCG 1 cut(s) 334
MwoI GCNNNNNNNGC 3 cut(s) 208, 371, 425
NdeII GATC 4 cut(s) 161, 284, 349, 355
NlaIII CATG 1 cut(s) 276
NspI RCATGY 1 cut(s) 276
NspV TTCGAA 1 cut(s) 188
PciI ACATGT 1 cut(s) 272
PfeI GAWTC 3 cut(s) 136, 176, 508
PkrI GCNGC 3 cut(s) 100, 151, 427
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
PscI ACATGT 1 cut(s) 272
PstI CTGCAG 1 cut(s) 376
PsuI RGATCY 2 cut(s) 284, 349
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 271
SaqAI TTAA 2 cut(s) 62, 516
SatI GCNGC 3 cut(s) 99, 150, 426
Sau3AI GATC 4 cut(s) 161, 284, 349, 355
SchI GAGTC 1 cut(s) 81
SduI GDGCHC 1 cut(s) 329
SfcI CTRYAG 1 cut(s) 372
SfuI TTCGAA 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 271
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 3 cut(s) 196, 252, 512
SsiI CCGC 1 cut(s) 171
SspMI CTAG 1 cut(s) 523
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 2 cut(s) 108, 298
TaiI ACGT 1 cut(s) 383
TaqI TCGA 1 cut(s) 188
TaqII GACCGA 1 cut(s) 154
TasI AATT 3 cut(s) 196, 252, 512
TfiI GAWTC 3 cut(s) 136, 176, 508
Tru1I TTAA 2 cut(s) 62, 516
Tru9I TTAA 2 cut(s) 62, 516
TscAI CASTG 1 cut(s) 301
TseI GCWGC 3 cut(s) 98, 149, 425
TspDTI ATGAA 1 cut(s) 267
TspRI CASTG 1 cut(s) 301
XapI RAATTY 1 cut(s) 196
XceI RCATGY 1 cut(s) 276
XmiI GTMKAC 1 cut(s) 383
XspI CTAG 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.