RLG00000025632

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000368
Physical Location & Seq
Forward (+)
47207185 .. 47207748
564 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025632

Sequence Viewer

Length: 564 bp
ATGGCAACCGCCGCCTTGCTCGGAGCTAATGCATTGACATGGAAGCATACCTTCCCAATTCTCTTGTTCCGCCGTCTTCCTCCTCTGTCCACCAGACCAATTAACTTTAACAATCAAGAACTAGGGTTAGCTTCTTCCTCTTCTAAACTTGACTTTAACCAACTCAAACTTAAGTGCTTCTTCTCCGACTCAAAATCTGGCCATGTCACTCAATCGCCTCTTATCAAAGATTACCCAAGACGCCCACTAGAGGTTATCTCCAATAAAATATTGTCAAATGCTCTCAAGGTACTGCGGATGCCTGCTATGGCTGCAGTGCTGTTAGGGTTGCTATTGATGTGTGGCCCAAATTCGGCTTTGGCAGCTTCCGGAGGGCGGTGCGGTGGAAGCGGATCTAGGTCATCCTCCTCGAGGTTCAGGTTGTCCTCGTCAAGCTACAGGTGGCAGTCGTCATCAGGGTCAAAGTCAACGTCTTCCAATTCGGATTCGTCTGAGGCTCTAGCGGAGGATAAATATTTCTGTTGTTTTTTTTATCCTTCTGGTTCTGATTTTCTTAGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

188

Amino Acids

20.19

Weight (kDa)

9.82

Isoelectric Point (pI)

59.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 409
AccIII TCCGGA 1 cut(s) 368
AciI CCGC 8 cut(s) 9, 12, 70, 295, 376, 381, 390, 503
AclWI GGATC 1 cut(s) 400
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 1 cut(s) 349
AcyI GRCGYC 1 cut(s) 241
AfaI GTAC 2 cut(s) 291, 559
AfiI CCNNNNNNNGG 4 cut(s) 250, 352, 375, 411
AflII CTTAAG 1 cut(s) 170
AluBI AGCT 4 cut(s) 26, 131, 365, 435
AluI AGCT 4 cut(s) 26, 131, 365, 435
AlwI GGATC 1 cut(s) 400
Ama87I CYCGRG 1 cut(s) 409
Aor13HI TCCGGA 1 cut(s) 368
AoxI GGCC 2 cut(s) 199, 343
ApeKI GCWGC 2 cut(s) 311, 362
ApoI RAATTY 1 cut(s) 349
ArsI GACNNNNNNTTYG 2 cut(s) 455, 487
AspS9I GGNCC 1 cut(s) 344
AvaI CYCGRG 1 cut(s) 409
BalI TGGCCA 1 cut(s) 201
BbsI GAAGAC 2 cut(s) 68, 465
BbvI GCAGC 2 cut(s) 298, 374
BceAI ACGGC 1 cut(s) 57
BfaI CTAG 4 cut(s) 122, 248, 396, 500
BfmI CTRYAG 2 cut(s) 312, 436
BfrI CTTAAG 1 cut(s) 170
BisI GCNGC 3 cut(s) 12, 312, 363
BlsI GCNGC 3 cut(s) 13, 313, 364
BmcAI AGTACT 1 cut(s) 559
BmeT110I CYCGRG 1 cut(s) 409
BmgT120I GGNCC 1 cut(s) 344
BmsI GCATC 1 cut(s) 288
BpiI GAAGAC 2 cut(s) 68, 465
BplI GAGNNNNNCTC 2 cut(s) 242, 274
BpuEI CTTGAG 1 cut(s) 269
BsaHI GRCGYC 1 cut(s) 241
BsaWI WCCGGW 1 cut(s) 368
Bsc4I CCNNNNNNNGG 4 cut(s) 250, 352, 375, 411
BseAI TCCGGA 1 cut(s) 368
BseGI GGATG 2 cut(s) 303, 401
BseLI CCNNNNNNNGG 4 cut(s) 250, 352, 375, 411
BseMII CTCAG 1 cut(s) 483
BseRI GAGGAG 2 cut(s) 72, 397
BseXI GCAGC 2 cut(s) 298, 374
BshFI GGCC 2 cut(s) 201, 345
BsiHKCI CYCGRG 1 cut(s) 409
BsiSI CCGG 1 cut(s) 369
BslI CCNNNNNNNGG 4 cut(s) 250, 352, 375, 411
BsnI GGCC 2 cut(s) 201, 345
BsoBI CYCGRG 1 cut(s) 409
Bsp13I TCCGGA 1 cut(s) 368
Bsp143I GATC 1 cut(s) 392
BspACI CCGC 8 cut(s) 9, 12, 70, 295, 376, 381, 390, 503
BspANI GGCC 2 cut(s) 201, 345
BspCNI CTCAG 1 cut(s) 484
BspEI TCCGGA 1 cut(s) 368
BspMAI CTGCAG 1 cut(s) 316
BspPI GGATC 1 cut(s) 400
BspTI CTTAAG 1 cut(s) 170
BssMI GATC 1 cut(s) 392
BssNI GRCGYC 1 cut(s) 241
Bst6I CTCTTC 1 cut(s) 145
BstACI GRCGYC 1 cut(s) 241
BstAFI CTTAAG 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 2 cut(s) 492, 554
BstENI CCTNNNNNAGG 1 cut(s) 409
BstF5I GGATG 2 cut(s) 303, 401
BstKTI GATC 1 cut(s) 395
BstMBI GATC 1 cut(s) 392
BstMWI GCNNNNNNNGC 4 cut(s) 11, 311, 362, 387
BstSFI CTRYAG 2 cut(s) 312, 436
BstV1I GCAGC 2 cut(s) 298, 374
BstV2I GAAGAC 2 cut(s) 68, 465
BstX2I RGATCY 1 cut(s) 392
BstYI RGATCY 1 cut(s) 392
BsuRI GGCC 2 cut(s) 201, 345
BtsCI GGATG 2 cut(s) 303, 401
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 344
CseI GACGC 1 cut(s) 249
Csp6I GTAC 2 cut(s) 290, 558
CviAII CATG 2 cut(s) 39, 203
CviJI RGCY 9 cut(s) 26, 131, 201, 311, 345, 356, 365, 435, 497
CviKI_1 RGCY 9 cut(s) 26, 131, 201, 311, 345, 356, 365, 435, 497
CviQI GTAC 2 cut(s) 290, 558
DdeI CTNAG 2 cut(s) 492, 554
DpnI GATC 1 cut(s) 394
DpnII GATC 1 cut(s) 392
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
EciI GGCGGA 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 409
EcoNI CCTNNNNNAGG 1 cut(s) 409
EcoT22I ATGCAT 1 cut(s) 34
FaeI CATG 2 cut(s) 42, 206
FaiI YATR 4 cut(s) 40, 48, 204, 308
FalI AAGNNNNNCTT 4 cut(s) 35, 67, 164, 196
FatI CATG 2 cut(s) 38, 202
Fnu4HI GCNGC 3 cut(s) 12, 312, 363
FokI GGATG 2 cut(s) 310, 388
Fsp4HI GCNGC 3 cut(s) 12, 312, 363
FspBI CTAG 4 cut(s) 122, 248, 396, 500
GluI GCNGC 3 cut(s) 12, 312, 363
HaeIII GGCC 2 cut(s) 201, 345
HapII CCGG 1 cut(s) 369
HgaI GACGC 1 cut(s) 249
Hin1I GRCGYC 1 cut(s) 241
Hin1II CATG 2 cut(s) 42, 206
HincII GTYRAC 1 cut(s) 468
HindII GTYRAC 1 cut(s) 468
HinfI GANTC 2 cut(s) 188, 485
HpaII CCGG 1 cut(s) 369
Hpy166II GTNNAC 2 cut(s) 90, 468
Hpy188I TCNGA 5 cut(s) 23, 187, 484, 493, 547
Hpy188III TCNNGA 2 cut(s) 116, 369
Hpy8I GTNNAC 2 cut(s) 90, 468
HpyAV CCTTC 2 cut(s) 61, 546
HpyCH4IV ACGT 1 cut(s) 470
HpyCH4V TGCA 2 cut(s) 32, 314
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 311, 362, 387
HpyF3I CTNAG 2 cut(s) 492, 554
HpySE526I ACGT 1 cut(s) 470
Hsp92I GRCGYC 1 cut(s) 241
Hsp92II CATG 2 cut(s) 42, 206
Kpn2I TCCGGA 1 cut(s) 368
Kzo9I GATC 1 cut(s) 392
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 8 cut(s) 106, 183, 315, 382, 403, 424, 441, 525
Lsp1109I GCAGC 2 cut(s) 298, 374
LweI GCATC 1 cut(s) 288
MaeI CTAG 4 cut(s) 122, 248, 396, 500
MaeII ACGT 1 cut(s) 470
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 394
MboI GATC 1 cut(s) 392
MboII GAAGA 5 cut(s) 68, 126, 132, 172, 465
MflI RGATCY 1 cut(s) 392
MlsI TGGCCA 1 cut(s) 201
MluCI AATT 4 cut(s) 57, 99, 349, 478
MluNI TGGCCA 1 cut(s) 201
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 210
Mox20I TGGCCA 1 cut(s) 201
Mph1103I ATGCAT 1 cut(s) 34
MroI TCCGGA 1 cut(s) 368
MscI TGGCCA 1 cut(s) 201
MseI TTAA 4 cut(s) 102, 108, 156, 171
MslI CAYNNNNRTG 1 cut(s) 37
Msp20I TGGCCA 1 cut(s) 201
MspCI CTTAAG 1 cut(s) 170
MspI CCGG 1 cut(s) 369
MwoI GCNNNNNNNGC 4 cut(s) 11, 311, 362, 387
NdeII GATC 1 cut(s) 392
NlaIII CATG 2 cut(s) 42, 206
NmuCI GTSAC 1 cut(s) 205
NsiI ATGCAT 1 cut(s) 34
PaeR7I CTCGAG 1 cut(s) 409
PfeI GAWTC 1 cut(s) 485
PkrI GCNGC 3 cut(s) 13, 313, 364
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
PspPI GGNCC 1 cut(s) 344
PspXI VCTCGAGB 1 cut(s) 409
PstI CTGCAG 1 cut(s) 316
PsuI RGATCY 1 cut(s) 392
RsaI GTAC 2 cut(s) 291, 559
RsaNI GTAC 2 cut(s) 290, 558
RseI CAYNNNNRTG 1 cut(s) 37
SaqAI TTAA 4 cut(s) 102, 108, 156, 171
SatI GCNGC 3 cut(s) 12, 312, 363
Sau3AI GATC 1 cut(s) 392
Sau96I GGNCC 1 cut(s) 344
ScaI AGTACT 1 cut(s) 559
SchI GAGTC 1 cut(s) 182
SfaNI GCATC 1 cut(s) 288
SfcI CTRYAG 2 cut(s) 312, 436
Sfr274I CTCGAG 1 cut(s) 409
SlaI CTCGAG 1 cut(s) 409
SmiMI CAYNNNNRTG 1 cut(s) 37
SmlI CTYRAG 3 cut(s) 170, 284, 409
SmoI CTYRAG 3 cut(s) 170, 284, 409
Sse9I AATT 4 cut(s) 57, 99, 349, 478
SsiI CCGC 8 cut(s) 9, 12, 70, 295, 376, 381, 390, 503
SspI AATATT 2 cut(s) 270, 515
SspMI CTAG 4 cut(s) 122, 248, 396, 500
TaiI ACGT 1 cut(s) 473
TaqI TCGA 1 cut(s) 410
TasI AATT 4 cut(s) 57, 99, 349, 478
TatI WGTACW 1 cut(s) 557
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 1 cut(s) 485
Tru1I TTAA 4 cut(s) 102, 108, 156, 171
Tru9I TTAA 4 cut(s) 102, 108, 156, 171
TscAI CASTG 1 cut(s) 321
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 2 cut(s) 311, 362
Tsp45I GTSAC 1 cut(s) 205
TspRI CASTG 1 cut(s) 321
Vha464I CTTAAG 1 cut(s) 170
XagI CCTNNNNNAGG 1 cut(s) 409
XapI RAATTY 1 cut(s) 349
XhoI CTCGAG 1 cut(s) 409
XspI CTAG 4 cut(s) 122, 248, 396, 500
ZrmI AGTACT 1 cut(s) 559
Zsp2I ATGCAT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.