FvH4_6g03510

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000368
Physical Location & Seq
Reverse (-)
1924738 .. 1927099
2362 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03510.t2

Sequence Viewer

Length: 1023 bp
ATGACGTCATTGAAAAATCCTGCCACCGTCGCCGTCGTGTTCTTGTTCCTCTTATTGATTCCGAGCTTCTCGTCCGCCGCCACCGGCGGCCGCGTCGGCGGAAGCTTGTTCCCCTCCTCCTCCTCCTCCGGCAACAAAAAATCCAAGTCTCCGTCTCCGTCTCCTCCGTCGTCTTCGCGCTCGTCGCGTCACTACCACGCGCCGCCGACTTGTTACTCCTCGTCGTCTTCGCACTCGTCGCGTCACTACTACGCGCCGCCGACTTATCACTCCACGGCGGCTCCAACCTCGTCCTCGTGGTCGGAGAATGCCGGTAAGGCGGTCGTCGGTTTCGTCATTTTGTTGGCGGTTATGCTCTGCTTGGGGATCATGTGGGACTGTTATACGGAGGCGGAGAAGAGAGAGGGTAAACTAAGCGTGGTGAAGCTTCAGGTTGGTTTGATGGGCGAGGCGCGATCACTCCAAAGGGAGCTTAATCGAATTACTGAAACTGCAAATACTTCTACTTCAGAGGGTTTGAGCGATGTTTTAAAAGGGGCAACAACAGCTTTGCTTTGTAATCTTCATCATTGCATCTCAAGCTATTCATCTGTTATACGAAAGTCTGAGATATACGATGCAGAGACATGCTTCAACCAATTTTCTGAGGAAGAGGCGGATAAATTTGATGATGTGACCCTTGTCAATTTGAACAGCTTTAAAACACACTCAGAAAGCCAGTCACCTGATGAAATCGACAAAGAATATATAGTGGTTACAATTCTGGTGGCTACCGATGGAGTACTGAAGTTGCCCACCATCAATGGCACTCGTGACTTGACGAAAGCGTTACATAAACTTGGAGCCATTTCCTCGAGCAAAATAATGGCAGTAGAGGTCTTGTGGATTCCTCAACAAGAAAATGATACTTTGACTCAGAGGGAACTACTCAAAAGCTACCCGGATTTGAGAGGCTTTTATGAAGCACCTTCTGAAGGGCAATGTGAAGATCAGCAGCCATTCTTTGGTGCTAATGTAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

341

Amino Acids

36.95

Weight (kDa)

6.01

Isoelectric Point (pI)

57.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 138 - 220 5.5e-15 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccB7I CCANNNNNTGG 1 cut(s) 1004
AccII CGCG 7 cut(s) 93, 178, 187, 200, 241, 254, 454
AclWI GGATC 1 cut(s) 374
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 1 cut(s) 662
AcuI CTGAAG 4 cut(s) 413, 492, 806, 993
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 783
AfiI CCNNNNNNNGG 2 cut(s) 974, 1004
AgsI TTSAA 3 cut(s) 13, 634, 691
AluBI AGCT 8 cut(s) 66, 105, 427, 472, 548, 582, 696, 936
AluI AGCT 8 cut(s) 66, 105, 427, 472, 548, 582, 696, 936
Alw26I GTCTC 4 cut(s) 153, 159, 165, 617
AlwI GGATC 1 cut(s) 374
Ama87I CYCGRG 1 cut(s) 853
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 994
ApoI RAATTY 1 cut(s) 662
AspLEI GCGC 4 cut(s) 180, 202, 256, 454
AsuC2I CCSGG 1 cut(s) 941
AsuHPI GGTGA 2 cut(s) 433, 714
AvaI CYCGRG 1 cut(s) 853
BauI CACGAG 2 cut(s) 295, 810
BbsI GAAGAC 2 cut(s) 165, 219
BbvI GCAGC 1 cut(s) 1006
BccI CCATC 3 cut(s) 436, 770, 806
BceAI ACGGC 2 cut(s) 17, 291
BcnI CCSGG 1 cut(s) 941
BcoDI GTCTC 4 cut(s) 153, 159, 165, 617
BglI GCCNNNNNGGC 2 cut(s) 96, 317
BisI GCNGC 7 cut(s) 78, 88, 91, 203, 257, 279, 995
BlsI GCNGC 7 cut(s) 79, 89, 92, 204, 258, 280, 996
BmcAI AGTACT 1 cut(s) 783
Bme1390I CCNGG 1 cut(s) 941
BmeT110I CYCGRG 1 cut(s) 853
BmiI GGNNCC 2 cut(s) 282, 844
BmrFI CCNGG 1 cut(s) 941
BmsI GCATC 2 cut(s) 582, 607
BoxI GACNNNNGTC 1 cut(s) 680
BpiI GAAGAC 2 cut(s) 165, 219
BpuEI CTTGAG 1 cut(s) 562
BpuMI CCSGG 1 cut(s) 941
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 273
BsaXI ACNNNNNCTCC 2 cut(s) 265, 295
Bsc4I CCNNNNNNNGG 2 cut(s) 974, 1004
Bse118I RCCGGY 2 cut(s) 83, 311
Bse1I ACTGG 1 cut(s) 718
Bse3DI GCAATG 2 cut(s) 568, 986
BseDI CCNNGG 1 cut(s) 273
BseLI CCNNNNNNNGG 2 cut(s) 974, 1004
BseMI GCAATG 2 cut(s) 568, 986
BseMII CTCAG 4 cut(s) 597, 636, 723, 929
BseNI ACTGG 1 cut(s) 718
BseRI GAGGAG 6 cut(s) 106, 109, 112, 115, 153, 208
BseX3I CGGCCG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 1006
Bsh1236I CGCG 7 cut(s) 93, 178, 187, 200, 241, 254, 454
Bsh1285I CGRYCG 2 cut(s) 91, 324
BshFI GGCC 1 cut(s) 90
BsiEI CGRYCG 2 cut(s) 91, 324
BsiHKCI CYCGRG 1 cut(s) 853
BsiSI CCGG 4 cut(s) 84, 129, 312, 941
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 2 cut(s) 974, 1004
BsmAI GTCTC 4 cut(s) 153, 159, 165, 617
BsmBI CGTCTC 2 cut(s) 159, 165
BsmFI GGGAC 1 cut(s) 389
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 1 cut(s) 90
BsoBI CYCGRG 1 cut(s) 853
Bsp143I GATC 3 cut(s) 366, 455, 988
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 4 cut(s) 598, 637, 722, 928
BspFNI CGCG 7 cut(s) 93, 178, 187, 200, 241, 254, 454
BspLI GGNNCC 2 cut(s) 282, 844
BspPI GGATC 1 cut(s) 374
BsrDI GCAATG 2 cut(s) 568, 986
BsrFI RCCGGY 2 cut(s) 83, 311
BsrI ACTGG 1 cut(s) 718
BssAI RCCGGY 2 cut(s) 83, 311
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 3 cut(s) 366, 455, 988
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 2 cut(s) 295, 810
Bst2BI CACGAG 2 cut(s) 295, 810
Bst4CI ACNGT 2 cut(s) 28, 380
Bst6I CTCTTC 2 cut(s) 392, 645
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 5 cut(s) 413, 606, 645, 709, 915
BstDSI CCRYGG 1 cut(s) 273
BstENI CCTNNNNNAGG 1 cut(s) 972
BstFNI CGCG 7 cut(s) 93, 178, 187, 200, 241, 254, 454
BstHHI GCGC 4 cut(s) 180, 202, 256, 454
BstKTI GATC 3 cut(s) 369, 458, 991
BstMAI GTCTC 4 cut(s) 153, 159, 165, 617
BstMBI GATC 3 cut(s) 366, 455, 988
BstMCI CGRYCG 2 cut(s) 91, 324
BstMWI GCNNNNNNNGC 7 cut(s) 29, 96, 184, 238, 317, 545, 579
BstNSI RCATGY 1 cut(s) 630
BstPAI GACNNNNGTC 1 cut(s) 680
BstSCI CCNGG 1 cut(s) 939
BstUI CGCG 7 cut(s) 93, 178, 187, 200, 241, 254, 454
BstV1I GCAGC 1 cut(s) 1006
BstV2I GAAGAC 2 cut(s) 165, 219
BstZI CGGCCG 1 cut(s) 88
BsuRI GGCC 1 cut(s) 90
BtgI CCRYGG 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 537
CciNI GCGGCCGC 1 cut(s) 88
CfoI GCGC 4 cut(s) 180, 202, 256, 454
Cfr10I RCCGGY 2 cut(s) 83, 311
CseI GACGC 3 cut(s) 82, 176, 230
Csp6I GTAC 1 cut(s) 782
CspCI CAANNNNNGTGG 2 cut(s) 747, 782
CviAII CATG 2 cut(s) 370, 627
CviQI GTAC 1 cut(s) 782
DdeI CTNAG 5 cut(s) 413, 606, 645, 709, 915
DpnI GATC 3 cut(s) 368, 457, 990
DpnII GATC 3 cut(s) 366, 455, 988
DraI TTTAAA 2 cut(s) 531, 700
EaeI YGGCCR 1 cut(s) 88
EagI CGGCCG 1 cut(s) 88
Eam1104I CTCTTC 2 cut(s) 392, 645
EarI CTCTTC 2 cut(s) 392, 645
EciI GGCGGA 4 cut(s) 64, 114, 407, 671
EclXI CGGCCG 1 cut(s) 88
Eco52I CGGCCG 1 cut(s) 88
Eco57I CTGAAG 4 cut(s) 413, 492, 806, 993
Eco88I CYCGRG 1 cut(s) 853
EcoNI CCTNNNNNAGG 1 cut(s) 972
Esp3I CGTCTC 2 cut(s) 159, 165
FaeI CATG 2 cut(s) 373, 630
FaqI GGGAC 1 cut(s) 389
FatI CATG 2 cut(s) 369, 626
Fnu4HI GCNGC 7 cut(s) 78, 88, 91, 203, 257, 279, 995
Fsp4HI GCNGC 7 cut(s) 78, 88, 91, 203, 257, 279, 995
GlaI GCGC 4 cut(s) 179, 201, 255, 453
GluI GCNGC 7 cut(s) 78, 88, 91, 203, 257, 279, 995
HaeIII GGCC 1 cut(s) 90
HapII CCGG 4 cut(s) 84, 129, 312, 941
HgaI GACGC 3 cut(s) 82, 176, 230
HhaI GCGC 4 cut(s) 180, 202, 256, 454
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 373, 630
Hin6I GCGC 4 cut(s) 178, 200, 254, 452
HinP1I GCGC 4 cut(s) 178, 200, 254, 452
HindIII AAGCTT 2 cut(s) 103, 425
HinfI GANTC 3 cut(s) 58, 886, 913
HpaII CCGG 4 cut(s) 84, 129, 312, 941
HphI GGTGA 2 cut(s) 433, 714
Hpy166II GTNNAC 1 cut(s) 410
Hpy188I TCNGA 8 cut(s) 63, 304, 511, 607, 646, 712, 918, 973
Hpy188III TCNNGA 1 cut(s) 812
Hpy8I GTNNAC 1 cut(s) 410
Hpy99I CGWCG 8 cut(s) 32, 38, 98, 172, 187, 226, 241, 329
HpyAV CCTTC 2 cut(s) 968, 978
HpyCH4III ACNGT 2 cut(s) 28, 380
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 3 cut(s) 494, 573, 620
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 96, 184, 238, 317, 545, 579
HpyF3I CTNAG 5 cut(s) 413, 606, 645, 709, 915
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 373, 630
HspAI GCGC 4 cut(s) 178, 200, 254, 452
Kzo9I GATC 3 cut(s) 366, 455, 988
LmnI GCTCC 3 cut(s) 286, 469, 842
LpnPI CCDG 9 cut(s) 33, 97, 142, 325, 416, 731, 738, 749, 954
Lsp1109I GCAGC 1 cut(s) 1006
LweI GCATC 2 cut(s) 582, 607
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 8 cut(s) 188, 212, 242, 673, 720, 754, 812, 828
MalI GATC 3 cut(s) 368, 457, 990
MboI GATC 3 cut(s) 366, 455, 988
MboII GAAGA 6 cut(s) 165, 219, 409, 554, 662, 998
MluCI AATT 5 cut(s) 480, 638, 662, 685, 759
MlyI GAGTC 1 cut(s) 907
MmeI TCCRAC 2 cut(s) 282, 308
MseI TTAA 3 cut(s) 474, 530, 699
MspI CCGG 4 cut(s) 84, 129, 312, 941
MspR9I CCNGG 1 cut(s) 941
Mva1269I GAATGC 1 cut(s) 313
MvnI CGCG 7 cut(s) 93, 178, 187, 200, 241, 254, 454
MwoI GCNNNNNNNGC 7 cut(s) 29, 96, 184, 238, 317, 545, 579
NciI CCSGG 1 cut(s) 941
NdeII GATC 3 cut(s) 366, 455, 988
NlaIII CATG 2 cut(s) 373, 630
NlaIV GGNNCC 2 cut(s) 282, 844
NmuCI GTSAC 5 cut(s) 188, 242, 673, 720, 812
NotI GCGGCCGC 1 cut(s) 88
NspI RCATGY 1 cut(s) 630
PaeR7I CTCGAG 1 cut(s) 853
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PctI GAATGC 1 cut(s) 313
PfeI GAWTC 2 cut(s) 58, 886
PflMI CCANNNNNTGG 1 cut(s) 1004
PkrI GCNGC 7 cut(s) 79, 89, 92, 204, 258, 280, 996
PleI GAGTC 1 cut(s) 907
PpsI GAGTC 1 cut(s) 907
PshAI GACNNNNGTC 1 cut(s) 680
PspN4I GGNNCC 2 cut(s) 282, 844
PspXI VCTCGAGB 1 cut(s) 853
RsaI GTAC 1 cut(s) 783
RsaNI GTAC 1 cut(s) 782
SaqAI TTAA 3 cut(s) 474, 530, 699
SatI GCNGC 7 cut(s) 78, 88, 91, 203, 257, 279, 995
Sau3AI GATC 3 cut(s) 366, 455, 988
ScaI AGTACT 1 cut(s) 783
SchI GAGTC 1 cut(s) 907
ScrFI CCNGG 1 cut(s) 941
SfaNI GCATC 2 cut(s) 582, 607
Sfr274I CTCGAG 1 cut(s) 853
SgrAI CRCCGGYG 1 cut(s) 83
SlaI CTCGAG 1 cut(s) 853
SmlI CTYRAG 2 cut(s) 577, 853
SmoI CTYRAG 2 cut(s) 577, 853
Sse9I AATT 5 cut(s) 480, 638, 662, 685, 759
StyD4I CCNGG 1 cut(s) 939
TaaI ACNGT 2 cut(s) 28, 380
TaiI ACGT 1 cut(s) 8
TaqI TCGA 3 cut(s) 478, 735, 854
TasI AATT 5 cut(s) 480, 638, 662, 685, 759
TatI WGTACW 1 cut(s) 781
TauI GCSGC 6 cut(s) 80, 90, 93, 205, 259, 281
TfiI GAWTC 2 cut(s) 58, 886
Tru1I TTAA 3 cut(s) 474, 530, 699
Tru9I TTAA 3 cut(s) 474, 530, 699
TseFI GTSAC 5 cut(s) 188, 242, 673, 720, 812
TseI GCWGC 1 cut(s) 994
Tsp45I GTSAC 5 cut(s) 188, 242, 673, 720, 812
TspDTI ATGAA 4 cut(s) 554, 576, 744, 975
TspGWI ACGGA 4 cut(s) 141, 147, 156, 401
Van91I CCANNNNNTGG 1 cut(s) 1004
XagI CCTNNNNNAGG 1 cut(s) 972
XapI RAATTY 1 cut(s) 662
XceI RCATGY 1 cut(s) 630
XhoI CTCGAG 1 cut(s) 853
ZraI GACGTC 1 cut(s) 6
ZrmI AGTACT 1 cut(s) 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.