Rorug02G0638300

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000368
Physical Location & Seq
Reverse (-)
75132748 .. 75133665
918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0638300.1

Sequence Viewer

Length: 918 bp
ATGGAAGGAGGTGGAGAAGGGTGGCGCCGTATGATAAGCGGTGCGGAGGATAAGTATGTGTTGAATCAGATAATGCTGAGATTCCGGCCGATTGCTCCGAAGCCAGTCACCGGAGGGTCAGGTTCGGGTGAGCCGCCGACGGGTTGGAGTAACGCGCTCGCTTCCAGGGGGAGAACCAAGAGAAAGTACGTTAGGGTTCGTAAGAATGTTAGCGGCGAGGAGGAGAGTGGGAGAGAGAGGGTGGACACTAAACGAGTGGTGACACTGCAGCTGTTGCCGGAGATCGAGAAGAGCGGCGATTACAGCAGTGACCAATCGACGGACGGCGGATCTAGTTGTGAGTTTGATTCTAGTATCGGCACAAATCATCAGTGGTTGAGTCTTAGTAAGATCGGAAGAGAGAATTACATGAGAGCGGATTCGGCGGCGGATCCGGCGGCGGTGATGGACCAGATGGGAGGAGTGGAGTCGTGGGTGACGGTAGAGTGCGTGACAGGCACATGCATGAAGGCTCCACCTCCTCAAGGGTTGGGAATCATCACTACGGACGAGGAGAGAATGAGGAGTCTGGAGGTTGACGCGTGTCCGGGGTTCGTCTCCGACGGTTGGAACAGGGTTCGGTGGCTGAACGGAGCGTTCAGGAGGATGGTGATGATGACGTGGCAGCAACAGTTGCCGGAGATAGCCGTGTGGTTAGCGATGAACGAGGAGCTGCCGTATACCCACTCGGCGTTTACGTGCCAGGTGAAGCTGAGATACACTGTGGGCAACAAGGAGAAGGAGAAGTACTACCACTCGCAAATGGTGCCTTGTGATTTGTGGAGAATGGACGGAGGAGGATTTGCATGGAGGCTCGACGTTAAAGCTGCGCTCACTCTGGCCGTTGATGCAGCTCCACTACATATCTTAAGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

305

Amino Acids

33.89

Weight (kDa)

6.47

Isoelectric Point (pI)

53.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7950 PF25821 155 - 292 2.2e-51 Domain of unknown function (DUF7950)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 24, 805
AccBSI CCGCTC 2 cut(s) 294, 416
AccI GTMKAC 1 cut(s) 719
AccII CGCG 2 cut(s) 155, 581
AclWI GGATC 3 cut(s) 337, 425, 438
AcoI YGGCCR 2 cut(s) 86, 879
AcyI GRCGYC 1 cut(s) 25
AfaI GTAC 2 cut(s) 188, 788
AfiI CCNNNNNNNGG 5 cut(s) 110, 140, 319, 524, 606
AflII CTTAAG 1 cut(s) 907
AflIII ACRYGT 1 cut(s) 579
AgsI TTSAA 1 cut(s) 64
AjiI CACGTC 1 cut(s) 660
AjnI CCWGG 2 cut(s) 164, 741
AluBI AGCT 5 cut(s) 271, 712, 751, 866, 893
AluI AGCT 5 cut(s) 271, 712, 751, 866, 893
Alw26I GTCTC 1 cut(s) 601
AlwI GGATC 3 cut(s) 337, 425, 438
AoxI GGCC 2 cut(s) 86, 879
ApeKI GCWGC 5 cut(s) 268, 664, 712, 866, 890
AspLEI GCGC 3 cut(s) 27, 157, 871
AspS9I GGNCC 1 cut(s) 448
AsuC2I CCSGG 1 cut(s) 588
AsuHPI GGTGA 7 cut(s) 100, 140, 271, 454, 487, 661, 757
AvaII GGWCC 1 cut(s) 448
BamHI GGATCC 1 cut(s) 430
BanI GGYRCC 2 cut(s) 24, 805
BarI GAAGNNNNNNTAC 4 cut(s) 740, 770, 772, 802
BbvI GCAGC 5 cut(s) 280, 676, 699, 853, 902
BccI CCATC 3 cut(s) 439, 448, 640
BceAI ACGGC 5 cut(s) 12, 340, 671, 700, 866
BciT130I CCWGG 2 cut(s) 166, 743
BcnI CCSGG 1 cut(s) 588
BcoDI GTCTC 1 cut(s) 601
BfaI CTAG 2 cut(s) 333, 351
BfmI CTRYAG 1 cut(s) 266
BfoI RGCGCY 1 cut(s) 28
BfrI CTTAAG 1 cut(s) 907
BmcAI AGTACT 1 cut(s) 788
Bme1390I CCNGG 3 cut(s) 166, 588, 743
Bme18I GGWCC 1 cut(s) 448
BmgBI CACGTC 1 cut(s) 660
BmgT120I GGNCC 1 cut(s) 448
BmiI GGNNCC 4 cut(s) 26, 432, 513, 807
BmrFI CCNGG 3 cut(s) 166, 588, 743
BmsI GCATC 1 cut(s) 877
BoxI GACNNNNGTC 1 cut(s) 582
BpmI CTGGAG 1 cut(s) 590
BpuEI CTTGAG 1 cut(s) 507
BpuMI CCSGG 1 cut(s) 588
BsaAI YACGTR 1 cut(s) 738
BsaHI GRCGYC 1 cut(s) 25
BsaJI CCNNGG 2 cut(s) 165, 587
BsaWI WCCGGW 1 cut(s) 110
BsaXI ACNNNNNCTCC 4 cut(s) 38, 68, 701, 731
Bsc4I CCNNNNNNNGG 5 cut(s) 110, 140, 319, 524, 606
Bse1I ACTGG 1 cut(s) 104
BseBI CCWGG 2 cut(s) 166, 743
BseDI CCNNGG 2 cut(s) 165, 587
BseGI GGATG 1 cut(s) 651
BseLI CCNNNNNNNGG 5 cut(s) 110, 140, 319, 524, 606
BseMII CTCAG 2 cut(s) 68, 743
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 8 cut(s) 233, 236, 474, 510, 566, 577, 722, 849
BseX3I CGGCCG 1 cut(s) 86
BseXI GCAGC 5 cut(s) 280, 676, 699, 853, 902
Bsh1236I CGCG 2 cut(s) 155, 581
Bsh1285I CGRYCG 1 cut(s) 89
BshFI GGCC 2 cut(s) 88, 881
BshNI GGYRCC 2 cut(s) 24, 805
BsiEI CGRYCG 1 cut(s) 89
BsiSI CCGG 6 cut(s) 85, 111, 278, 434, 587, 677
BslI CCNNNNNNNGG 5 cut(s) 110, 140, 319, 524, 606
BsmAI GTCTC 1 cut(s) 601
BsmBI CGTCTC 1 cut(s) 601
BsnI GGCC 2 cut(s) 88, 881
Bsp143I GATC 4 cut(s) 282, 329, 390, 430
BspANI GGCC 2 cut(s) 88, 881
BspCNI CTCAG 2 cut(s) 69, 744
BspFNI CGCG 2 cut(s) 155, 581
BspLI GGNNCC 4 cut(s) 26, 432, 513, 807
BspMAI CTGCAG 1 cut(s) 270
BspPI GGATC 3 cut(s) 337, 425, 438
BspQI GCTCTTC 1 cut(s) 284
BspT107I GGYRCC 2 cut(s) 24, 805
BspTI CTTAAG 1 cut(s) 907
BsrBI CCGCTC 2 cut(s) 294, 416
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 165, 587
BssMI GATC 4 cut(s) 282, 329, 390, 430
BssNAI GTATAC 1 cut(s) 720
BssNI GRCGYC 1 cut(s) 25
Bst1107I GTATAC 1 cut(s) 720
Bst2UI CCWGG 2 cut(s) 166, 743
Bst4CI ACNGT 4 cut(s) 481, 605, 672, 763
Bst6I CTCTTC 2 cut(s) 284, 391
BstACI GRCGYC 1 cut(s) 25
BstAFI CTTAAG 1 cut(s) 907
BstAPI GCANNNNNTGC 3 cut(s) 274, 673, 805
BstBAI YACGTR 1 cut(s) 738
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 3 cut(s) 77, 383, 752
BstENI CCTNNNNNAGG 1 cut(s) 522
BstF5I GGATG 1 cut(s) 651
BstFNI CGCG 2 cut(s) 155, 581
BstH2I RGCGCY 1 cut(s) 28
BstHHI GCGC 3 cut(s) 27, 157, 871
BstKTI GATC 4 cut(s) 285, 332, 393, 433
BstMAI GTCTC 1 cut(s) 601
BstMBI GATC 4 cut(s) 282, 329, 390, 430
BstMCI CGRYCG 1 cut(s) 89
BstMWI GCNNNNNNNGC 8 cut(s) 274, 303, 422, 434, 495, 673, 805, 887
BstNI CCWGG 2 cut(s) 166, 743
BstNSI RCATGY 1 cut(s) 504
BstPAI GACNNNNGTC 1 cut(s) 582
BstSCI CCNGG 3 cut(s) 164, 586, 741
BstSFI CTRYAG 1 cut(s) 266
BstUI CGCG 2 cut(s) 155, 581
BstV1I GCAGC 5 cut(s) 280, 676, 699, 853, 902
BstX2I RGATCY 2 cut(s) 329, 430
BstYI RGATCY 2 cut(s) 329, 430
BstZ17I GTATAC 1 cut(s) 720
BstZI CGGCCG 1 cut(s) 86
BsuRI GGCC 2 cut(s) 88, 881
BtgZI GCGATG 1 cut(s) 713
BtrI CACGTC 1 cut(s) 660
BtsCI GGATG 1 cut(s) 651
BtsI GCAGTG 2 cut(s) 263, 313
BtsIMutI CAGTG 4 cut(s) 263, 313, 377, 759
Cac8I GCNNGC 1 cut(s) 159
CfoI GCGC 3 cut(s) 27, 157, 871
Cfr13I GGNCC 1 cut(s) 448
CseI GACGC 1 cut(s) 587
Csp6I GTAC 2 cut(s) 187, 787
CviAII CATG 4 cut(s) 409, 501, 505, 846
CviQI GTAC 2 cut(s) 187, 787
DdeI CTNAG 3 cut(s) 77, 383, 752
DinI GGCGCC 1 cut(s) 26
DpnI GATC 4 cut(s) 284, 331, 392, 432
DpnII GATC 4 cut(s) 282, 329, 390, 430
EaeI YGGCCR 2 cut(s) 86, 879
EagI CGGCCG 1 cut(s) 86
Eam1104I CTCTTC 2 cut(s) 284, 391
EarI CTCTTC 2 cut(s) 284, 391
EciI GGCGGA 2 cut(s) 342, 443
EclXI CGGCCG 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 448
Eco52I CGGCCG 1 cut(s) 86
EcoNI CCTNNNNNAGG 1 cut(s) 522
EcoRII CCWGG 2 cut(s) 164, 741
EcoT22I ATGCAT 1 cut(s) 506
EgeI GGCGCC 1 cut(s) 26
EheI GGCGCC 1 cut(s) 26
Esp3I CGTCTC 1 cut(s) 601
FaeI CATG 4 cut(s) 412, 504, 508, 849
FaiI YATR 8 cut(s) 32, 57, 410, 502, 506, 720, 847, 903
FatI CATG 4 cut(s) 408, 500, 504, 845
FblI GTMKAC 1 cut(s) 719
FokI GGATG 1 cut(s) 658
FspBI CTAG 2 cut(s) 333, 351
GlaI GCGC 3 cut(s) 26, 156, 870
GsuI CTGGAG 1 cut(s) 590
HaeII RGCGCY 1 cut(s) 28
HaeIII GGCC 2 cut(s) 88, 881
HapII CCGG 6 cut(s) 85, 111, 278, 434, 587, 677
HgaI GACGC 1 cut(s) 587
HhaI GCGC 3 cut(s) 27, 157, 871
Hin1I GRCGYC 1 cut(s) 25
Hin1II CATG 4 cut(s) 412, 504, 508, 849
Hin6I GCGC 3 cut(s) 25, 155, 869
HinP1I GCGC 3 cut(s) 25, 155, 869
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 8 cut(s) 64, 81, 347, 379, 419, 467, 534, 565
HpaII CCGG 6 cut(s) 85, 111, 278, 434, 587, 677
HphI GGTGA 7 cut(s) 100, 140, 271, 454, 487, 661, 757
Hpy166II GTNNAC 4 cut(s) 244, 577, 720, 735
Hpy188I TCNGA 4 cut(s) 69, 99, 395, 601
Hpy188III TCNNGA 3 cut(s) 286, 569, 640
Hpy8I GTNNAC 4 cut(s) 244, 577, 720, 735
Hpy99I CGWCG 4 cut(s) 142, 322, 605, 860
HpyAV CCTTC 3 cut(s) 11, 502, 772
HpyCH4III ACNGT 4 cut(s) 481, 605, 672, 763
HpyCH4IV ACGT 4 cut(s) 189, 659, 737, 858
HpyCH4V TGCA 4 cut(s) 268, 504, 845, 890
HpyF10VI GCNNNNNNNGC 8 cut(s) 274, 303, 422, 434, 495, 673, 805, 887
HpyF3I CTNAG 3 cut(s) 77, 383, 752
HpySE526I ACGT 4 cut(s) 189, 659, 737, 858
Hsp92I GRCGYC 1 cut(s) 25
Hsp92II CATG 4 cut(s) 412, 504, 508, 849
HspAI GCGC 3 cut(s) 25, 155, 869
KasI GGCGCC 1 cut(s) 24
Kzo9I GATC 4 cut(s) 282, 329, 390, 430
LguI GCTCTTC 1 cut(s) 284
LmnI GCTCC 5 cut(s) 100, 517, 632, 709, 898
Lsp1109I GCAGC 5 cut(s) 280, 676, 699, 853, 902
LweI GCATC 1 cut(s) 877
MaeI CTAG 2 cut(s) 333, 351
MaeII ACGT 4 cut(s) 189, 659, 737, 858
MaeIII GTNAC 6 cut(s) 106, 149, 259, 308, 475, 490
MalI GATC 4 cut(s) 284, 331, 392, 432
MbiI CCGCTC 2 cut(s) 294, 416
MboI GATC 4 cut(s) 282, 329, 390, 430
MboII GAAGA 2 cut(s) 301, 408
MflI RGATCY 2 cut(s) 329, 430
MluCI AATT 1 cut(s) 403
MluI ACGCGT 1 cut(s) 579
Mly113I GGCGCC 1 cut(s) 25
MlyI GAGTC 3 cut(s) 388, 476, 574
MmeI TCCRAC 3 cut(s) 125, 587, 624
Mph1103I ATGCAT 1 cut(s) 506
MseI TTAA 2 cut(s) 861, 908
MslI CAYNNNNRTG 1 cut(s) 503
MspA1I CMGCKG 1 cut(s) 271
MspCI CTTAAG 1 cut(s) 907
MspI CCGG 6 cut(s) 85, 111, 278, 434, 587, 677
MspR9I CCNGG 3 cut(s) 166, 588, 743
MvaI CCWGG 2 cut(s) 166, 743
MvnI CGCG 2 cut(s) 155, 581
MwoI GCNNNNNNNGC 8 cut(s) 274, 303, 422, 434, 495, 673, 805, 887
NarI GGCGCC 1 cut(s) 25
NciI CCSGG 1 cut(s) 588
NdeII GATC 4 cut(s) 282, 329, 390, 430
NlaIII CATG 4 cut(s) 412, 504, 508, 849
NlaIV GGNNCC 4 cut(s) 26, 432, 513, 807
NmeAIII GCCGAG 1 cut(s) 707
NmuCI GTSAC 5 cut(s) 106, 259, 308, 475, 490
NsiI ATGCAT 1 cut(s) 506
NspI RCATGY 1 cut(s) 504
PciSI GCTCTTC 1 cut(s) 284
PcsI WCGNNNNNNNCGW 1 cut(s) 734
PfeI GAWTC 5 cut(s) 64, 81, 347, 419, 534
PleI GAGTC 3 cut(s) 387, 475, 573
PluTI GGCGCC 1 cut(s) 28
PpsI GAGTC 3 cut(s) 387, 475, 573
Ppu21I YACGTR 1 cut(s) 738
PshAI GACNNNNGTC 1 cut(s) 582
Psp6I CCWGG 2 cut(s) 164, 741
PspGI CCWGG 2 cut(s) 164, 741
PspN4I GGNNCC 4 cut(s) 26, 432, 513, 807
PspPI GGNCC 1 cut(s) 448
PstI CTGCAG 1 cut(s) 270
PsuI RGATCY 2 cut(s) 329, 430
PvuII CAGCTG 1 cut(s) 271
RsaI GTAC 2 cut(s) 188, 788
RsaNI GTAC 2 cut(s) 187, 787
RseI CAYNNNNRTG 1 cut(s) 503
SapI GCTCTTC 1 cut(s) 284
SaqAI TTAA 2 cut(s) 861, 908
Sau3AI GATC 4 cut(s) 282, 329, 390, 430
Sau96I GGNCC 1 cut(s) 448
ScaI AGTACT 1 cut(s) 788
SchI GAGTC 3 cut(s) 388, 476, 574
ScrFI CCNGG 3 cut(s) 166, 588, 743
SfaNI GCATC 1 cut(s) 877
SfcI CTRYAG 1 cut(s) 266
SfoI GGCGCC 1 cut(s) 26
SinI GGWCC 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 2 cut(s) 522, 907
SmoI CTYRAG 2 cut(s) 522, 907
Sse9I AATT 1 cut(s) 403
SspDI GGCGCC 1 cut(s) 24
SspMI CTAG 2 cut(s) 333, 351
StyD4I CCNGG 3 cut(s) 164, 586, 741
TaaI ACNGT 4 cut(s) 481, 605, 672, 763
TaiI ACGT 4 cut(s) 192, 662, 740, 861
TaqI TCGA 3 cut(s) 285, 317, 855
TasI AATT 1 cut(s) 403
TatI WGTACW 1 cut(s) 786
TauI GCSGC 5 cut(s) 136, 216, 297, 428, 440
TfiI GAWTC 5 cut(s) 64, 81, 347, 419, 534
Tru1I TTAA 2 cut(s) 861, 908
Tru9I TTAA 2 cut(s) 861, 908
TscAI CASTG 4 cut(s) 270, 313, 377, 766
TseFI GTSAC 5 cut(s) 106, 259, 308, 475, 490
TseI GCWGC 5 cut(s) 268, 664, 712, 866, 890
Tsp45I GTSAC 5 cut(s) 106, 259, 308, 475, 490
TspDTI ATGAA 2 cut(s) 521, 716
TspGWI ACGGA 4 cut(s) 335, 560, 645, 846
TspRI CASTG 4 cut(s) 270, 313, 377, 766
Vha464I CTTAAG 1 cut(s) 907
VpaK11BI GGWCC 1 cut(s) 448
XagI CCTNNNNNAGG 1 cut(s) 522
XceI RCATGY 1 cut(s) 504
XmiI GTMKAC 1 cut(s) 719
XspI CTAG 2 cut(s) 333, 351
ZrmI AGTACT 1 cut(s) 788
Zsp2I ATGCAT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.