Rmu_sc0001729.1_g000006

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001729.1
OG0000368
Physical Location & Seq
Forward (+)
31184 .. 33732
2549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001729.1_g000006.1.cds

Sequence Viewer

Length: 774 bp
atggcgttgagaaatccggccaccgtcgccgcgttattgctcgctctgctattgatttccgaccccaatttcgcgtccgccgctacgggtgggcggtccggcggaagcctgttcccctccggcggagattcttcttcatcttcgtcttcatcgtggtcggggtcttcgggtgcatcggactcttggtcgtggcaccactcgccgtcgtcgccgtcttcctcgtcggacggtggactctacgtcttcttggttttaatggcggttgtggttggtgtggcggtcatctgccgctgtgctggtgttgggaaaacaagcgtcgtcaagcttcaggttactcgaaagtccgagacagaagatgcagagcaatgcttcaaacaactttctatggaagaagcagctaaatttgatgaagtgacgcttgccaatgtgaacaactttatagtgcgttcaacaagccagtcaccaaatgaaggccacaaagaatatatagtggttacaattttggtggctactcgaggtgcaccaaagttgcccagcatcaatggccctggtgacttgaagaaagcattacagagtcttggatccattccctcgaaccaaatactggcggttgaggtcttgtggactcctcaacaagaaaatgatgctttgactgagaaggaactacttaaagattacccgcagttgaggggcttttatgatggagggtcacttgaagaagggccatatgacgattcccacccgttcttaggggttactgtagtcaagagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

257

Amino Acids

27.02

Weight (kDa)

5.11

Isoelectric Point (pI)

57.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 192
AccB7I CCANNNNNTGG 1 cut(s) 604
AccII CGCG 2 cut(s) 32, 74
AclWI GGATC 2 cut(s) 576, 589
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 1 cut(s) 401
AcuI CTGAAG 1 cut(s) 311
AfiI CCNNNNNNNGG 4 cut(s) 122, 470, 604, 749
AgsI TTSAA 4 cut(s) 373, 450, 559, 716
AhdI GACNNNNNGTC 2 cut(s) 184, 239
AjnI CCWGG 1 cut(s) 547
AluBI AGCT 3 cut(s) 325, 398, 771
AluI AGCT 3 cut(s) 325, 398, 771
Alw21I GWGCWC 1 cut(s) 523
Alw26I GTCTC 1 cut(s) 341
Alw44I GTGCAC 1 cut(s) 519
AlwI GGATC 2 cut(s) 576, 589
Ama87I CYCGRG 1 cut(s) 513
AoxI GGCC 4 cut(s) 18, 472, 544, 722
ApaLI GTGCAC 1 cut(s) 519
ApeKI GCWGC 1 cut(s) 395
ApoI RAATTY 1 cut(s) 401
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AspS9I GGNCC 3 cut(s) 96, 545, 722
AsuHPI GGTGA 2 cut(s) 453, 563
AvaI CYCGRG 1 cut(s) 513
AvaII GGWCC 1 cut(s) 96
BaeGI GKGCMC 1 cut(s) 523
BamHI GGATCC 1 cut(s) 581
BanI GGYRCC 1 cut(s) 192
BbsI GAAGAC 4 cut(s) 138, 156, 207, 235
Bbv12I GWGCWC 1 cut(s) 523
BbvI GCAGC 1 cut(s) 407
BccI CCATC 1 cut(s) 695
BceAI ACGGC 2 cut(s) 187, 196
BciT130I CCWGG 1 cut(s) 549
BcoDI GTCTC 1 cut(s) 341
BfaI CTAG 1 cut(s) 772
BfmI CTRYAG 1 cut(s) 759
BisI GCNGC 4 cut(s) 30, 81, 289, 396
BlsI GCNGC 4 cut(s) 31, 82, 290, 397
Bme1390I CCNGG 1 cut(s) 549
Bme18I GGWCC 1 cut(s) 96
BmeRI GACNNNNNGTC 2 cut(s) 184, 239
BmeT110I CYCGRG 1 cut(s) 513
BmgT120I GGNCC 3 cut(s) 96, 545, 722
BmiI GGNNCC 2 cut(s) 194, 583
BmrFI CCNGG 1 cut(s) 549
BmsI GCATC 4 cut(s) 182, 346, 546, 634
BpiI GAAGAC 4 cut(s) 138, 156, 207, 235
BsaJI CCNNGG 1 cut(s) 547
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 470, 604, 749
Bse1I ACTGG 2 cut(s) 457, 609
Bse3DI GCAATG 1 cut(s) 371
BseBI CCWGG 1 cut(s) 549
BseDI CCNNGG 1 cut(s) 547
BseLI CCNNNNNNNGG 4 cut(s) 122, 470, 604, 749
BseMI GCAATG 1 cut(s) 371
BseMII CTCAG 1 cut(s) 645
BseNI ACTGG 2 cut(s) 457, 609
BseRI GAGGAG 1 cut(s) 618
BseSI GKGCMC 1 cut(s) 523
BseXI GCAGC 1 cut(s) 407
BseYI CCCAGC 1 cut(s) 533
Bsh1236I CGCG 2 cut(s) 32, 74
BshFI GGCC 4 cut(s) 20, 474, 546, 724
BshNI GGYRCC 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 523
BsiHKCI CYCGRG 1 cut(s) 513
BsiSI CCGG 3 cut(s) 17, 99, 120
BslI CCNNNNNNNGG 4 cut(s) 122, 470, 604, 749
BsmAI GTCTC 1 cut(s) 341
BsnI GGCC 4 cut(s) 20, 474, 546, 724
BsoBI CYCGRG 1 cut(s) 513
Bsp1286I GDGCHC 1 cut(s) 523
Bsp143I GATC 1 cut(s) 581
BspANI GGCC 4 cut(s) 20, 474, 546, 724
BspCNI CTCAG 1 cut(s) 646
BspFNI CGCG 2 cut(s) 32, 74
BspLI GGNNCC 2 cut(s) 194, 583
BspPI GGATC 2 cut(s) 576, 589
BspT107I GGYRCC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 371
BsrI ACTGG 2 cut(s) 457, 609
BssECI CCNNGG 1 cut(s) 547
BssMI GATC 1 cut(s) 581
Bst2UI CCWGG 1 cut(s) 549
Bst4CI ACNGT 3 cut(s) 25, 230, 760
BstC8I GCNNGC 2 cut(s) 42, 420
BstDEI CTNAG 2 cut(s) 654, 748
BstFNI CGCG 2 cut(s) 32, 74
BstKTI GATC 1 cut(s) 584
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 1 cut(s) 581
BstMWI GCNNNNNNNGC 6 cut(s) 26, 46, 80, 199, 208, 543
BstNI CCWGG 1 cut(s) 549
BstSCI CCNGG 1 cut(s) 547
BstSFI CTRYAG 1 cut(s) 759
BstSLI GKGCMC 1 cut(s) 523
BstUI CGCG 2 cut(s) 32, 74
BstV1I GCAGC 1 cut(s) 407
BstV2I GAAGAC 4 cut(s) 138, 156, 207, 235
BstX2I RGATCY 1 cut(s) 581
BstYI RGATCY 1 cut(s) 581
BsuRI GGCC 4 cut(s) 20, 474, 546, 724
Cac8I GCNNGC 2 cut(s) 42, 420
Cfr13I GGNCC 3 cut(s) 96, 545, 722
CpoI CGGWCCG 1 cut(s) 96
CseI GACGC 3 cut(s) 63, 304, 424
CspCI CAANNNNNGTGG 2 cut(s) 486, 521
CspI CGGWCCG 1 cut(s) 96
DdeI CTNAG 2 cut(s) 654, 748
DpnI GATC 1 cut(s) 583
DpnII GATC 1 cut(s) 581
DriI GACNNNNNGTC 2 cut(s) 184, 239
EaeI YGGCCR 1 cut(s) 18
Eam1105I GACNNNNNGTC 2 cut(s) 184, 239
EciI GGCGGA 3 cut(s) 67, 117, 138
Eco47I GGWCC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 311
Eco88I CYCGRG 1 cut(s) 513
EcoRII CCWGG 1 cut(s) 547
FaiI YATR 7 cut(s) 386, 440, 486, 488, 699, 727, 729
FalI AAGNNNNNCTT 2 cut(s) 402, 434
FauI CCCGC 1 cut(s) 687
FauNDI CATATG 1 cut(s) 727
Fnu4HI GCNGC 4 cut(s) 30, 81, 289, 396
Fsp4HI GCNGC 4 cut(s) 30, 81, 289, 396
FspBI CTAG 1 cut(s) 772
GluI GCNGC 4 cut(s) 30, 81, 289, 396
GsaI CCCAGC 1 cut(s) 537
HaeIII GGCC 4 cut(s) 20, 474, 546, 724
HapII CCGG 3 cut(s) 17, 99, 120
HgaI GACGC 3 cut(s) 63, 304, 424
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 6 cut(s) 128, 179, 234, 574, 625, 734
HpaII CCGG 3 cut(s) 17, 99, 120
HphI GGTGA 2 cut(s) 453, 563
Hpy166II GTNNAC 4 cut(s) 233, 430, 521, 624
Hpy188I TCNGA 4 cut(s) 61, 178, 226, 346
Hpy188III TCNNGA 1 cut(s) 766
Hpy8I GTNNAC 4 cut(s) 233, 430, 521, 624
Hpy99I CGWCG 5 cut(s) 29, 208, 211, 226, 320
HpyAV CCTTC 3 cut(s) 464, 652, 713
HpyCH4III ACNGT 3 cut(s) 25, 230, 760
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 3 cut(s) 173, 359, 521
HpyF10VI GCNNNNNNNGC 6 cut(s) 26, 46, 80, 199, 208, 543
HpyF3I CTNAG 2 cut(s) 654, 748
HpySE526I ACGT 1 cut(s) 240
Kzo9I GATC 1 cut(s) 581
Lsp1109I GCAGC 1 cut(s) 407
LweI GCATC 4 cut(s) 182, 346, 546, 634
MaeI CTAG 1 cut(s) 772
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 7 cut(s) 331, 412, 459, 493, 551, 708, 754
MalI GATC 1 cut(s) 583
MboI GATC 1 cut(s) 581
MflI RGATCY 1 cut(s) 581
MhlI GDGCHC 1 cut(s) 523
MluCI AATT 3 cut(s) 67, 401, 498
MlyI GAGTC 4 cut(s) 173, 228, 583, 619
MmeI TCCRAC 2 cut(s) 84, 204
MnlI CCTC 8 cut(s) 127, 229, 509, 601, 607, 639, 681, 698
MseI TTAA 2 cut(s) 254, 669
MspA1I CMGCKG 1 cut(s) 291
MspI CCGG 3 cut(s) 17, 99, 120
MspR9I CCNGG 1 cut(s) 549
MvaI CCWGG 1 cut(s) 549
MvnI CGCG 2 cut(s) 32, 74
MwoI GCNNNNNNNGC 6 cut(s) 26, 46, 80, 199, 208, 543
NdeI CATATG 1 cut(s) 727
NdeII GATC 1 cut(s) 581
NlaIV GGNNCC 2 cut(s) 194, 583
NmuCI GTSAC 4 cut(s) 412, 459, 551, 708
PaeR7I CTCGAG 1 cut(s) 513
PcsI WCGNNNNNNNCGW 1 cut(s) 149
PfeI GAWTC 2 cut(s) 128, 734
PflMI CCANNNNNTGG 1 cut(s) 604
PkrI GCNGC 4 cut(s) 31, 82, 290, 397
PleI GAGTC 4 cut(s) 173, 228, 582, 619
PpsI GAGTC 4 cut(s) 173, 228, 582, 619
Psp6I CCWGG 1 cut(s) 547
PspFI CCCAGC 1 cut(s) 533
PspGI CCWGG 1 cut(s) 547
PspN4I GGNNCC 2 cut(s) 194, 583
PspPI GGNCC 3 cut(s) 96, 545, 722
PspXI VCTCGAGB 1 cut(s) 513
PsuI RGATCY 1 cut(s) 581
Rsr2I CGGWCCG 1 cut(s) 96
RsrII CGGWCCG 1 cut(s) 96
SaqAI TTAA 2 cut(s) 254, 669
SatI GCNGC 4 cut(s) 30, 81, 289, 396
Sau3AI GATC 1 cut(s) 581
Sau96I GGNCC 3 cut(s) 96, 545, 722
SchI GAGTC 4 cut(s) 173, 228, 583, 619
ScrFI CCNGG 1 cut(s) 549
SduI GDGCHC 1 cut(s) 523
SetI ASST 7 cut(s) 243, 327, 333, 400, 520, 618, 773
SfaNI GCATC 4 cut(s) 182, 346, 546, 634
SfcI CTRYAG 1 cut(s) 759
Sfr274I CTCGAG 1 cut(s) 513
SinI GGWCC 1 cut(s) 96
SlaI CTCGAG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 513
SmoI CTYRAG 1 cut(s) 513
Sse9I AATT 3 cut(s) 67, 401, 498
SspMI CTAG 1 cut(s) 772
StyD4I CCNGG 1 cut(s) 547
TaaI ACNGT 3 cut(s) 25, 230, 760
TaiI ACGT 1 cut(s) 243
TaqI TCGA 3 cut(s) 337, 514, 593
TasI AATT 3 cut(s) 67, 401, 498
TauI GCSGC 3 cut(s) 32, 83, 291
TfiI GAWTC 2 cut(s) 128, 734
Tru1I TTAA 2 cut(s) 254, 669
Tru9I TTAA 2 cut(s) 254, 669
TseFI GTSAC 4 cut(s) 412, 459, 551, 708
TseI GCWGC 1 cut(s) 395
Tsp45I GTSAC 4 cut(s) 412, 459, 551, 708
TspDTI ATGAA 4 cut(s) 126, 138, 423, 483
Van91I CCANNNNNTGG 1 cut(s) 604
VneI GTGCAC 1 cut(s) 519
VpaK11BI GGWCC 1 cut(s) 96
XapI RAATTY 1 cut(s) 401
XhoI CTCGAG 1 cut(s) 513
XspI CTAG 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.