Rroxscaffold_164G00436110

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000164
OG0000368
Physical Location & Seq
Forward (+)
119971 .. 123630
3660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_164G00436110.1

Sequence Viewer

Length: 816 bp
ATGGCTCTTGGTCAACTTTTTATCCAAGGAACATACTTGAGGTTATCGCCTATAAGATTTTTAAAAGCTCTCAGGGTGTTTAGGAGACTCACAATGGCAGCCATACTGTTGTGTTTTTTGTTGATGTATCATTTGAATCCAGCATTGGCTGCCTCAGGTGGATCGGTCGGCGGAGATTCTTGGTCGGATTCCGATTCCAATTCCAATTCTGATTCGGATTCGTATCTTTATCCCTCGGATTCGGATTCATGGTTGCACCCATCATCAAGTCCTTCGAAAACGAATTCGCCCGAGGAGGGTAAAGGTCAGGCAGTTTTTTGTTTGTTGATTATGGGGGCAATTGTGGTGTTGGGGTTTACATGTTCATCAAGATCTACTGCCACTGTTGTCAAGCTTCAGGTTGGTCTGTTGAGCACAGCGCGAACACTCCAAAAGGATCTTGATCACATAGCTGAAACTGCAGATACGTCTACTCACAAGGATTTGAGCCGTGTTTTGACAGGTAAACCTTATAATCAGTTAATCTTTTCTAATCTGGTTAATGGAGAAAATGGTAGTTTCATGACGCCACAGTTGAACGTGGCTCCCAAAGAAAGTGTGAAGGATGCACAAAAATTCTTTAATCAAGTTTCATTGGAAGAGAGGGCTAAATTTGACGAAGAGACACTTGTTAATGTGAACAACATAAAAAGGAAAAGTACAACCAAGAGACTTAAGGGATTGCAAAATCAATATATAGTGATCAATAAGTATGGCAACACAAGGCTCAAAGTTAACAAATCAGCGAGGCAACAGTTTTCTCAAAATCTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

271

Amino Acids

29.91

Weight (kDa)

9.47

Isoelectric Point (pI)

45.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 127 - 248 5.2e-21 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 513
AccI GTMKAC 1 cut(s) 470
AccII CGCG 1 cut(s) 421
AciI CCGC 1 cut(s) 171
AclWI GGATC 2 cut(s) 169, 444
AcsI RAATTY 3 cut(s) 283, 614, 650
AcuI CTGAAG 1 cut(s) 380
AcyI GRCGYC 1 cut(s) 566
AfaI GTAC 1 cut(s) 700
AfiI CCNNNNNNNGG 1 cut(s) 296
AflII CTTAAG 1 cut(s) 713
AflIII ACRYGT 1 cut(s) 359
AgsI TTSAA 2 cut(s) 136, 577
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AluBI AGCT 3 cut(s) 68, 394, 452
AluI AGCT 3 cut(s) 68, 394, 452
Alw21I GWGCWC 1 cut(s) 416
Alw26I GTCTC 3 cut(s) 79, 656, 703
AlwI GGATC 2 cut(s) 169, 444
Ama87I CYCGRG 1 cut(s) 290
ApeKI GCWGC 2 cut(s) 98, 149
ApoI RAATTY 3 cut(s) 283, 614, 650
AspLEI GCGC 1 cut(s) 421
AsuII TTCGAA 1 cut(s) 275
AvaI CYCGRG 1 cut(s) 290
AxyI CCTNAGG 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 416
BbvI GCAGC 2 cut(s) 110, 136
BccI CCATC 1 cut(s) 268
BceAI ACGGC 1 cut(s) 474
BclI TGATCA 2 cut(s) 442, 741
BcoDI GTCTC 3 cut(s) 79, 656, 703
BfmI CTRYAG 1 cut(s) 459
BfrI CTTAAG 1 cut(s) 713
BglII AGATCT 1 cut(s) 371
BisI GCNGC 2 cut(s) 99, 150
BlsI GCNGC 2 cut(s) 100, 151
BmeT110I CYCGRG 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 585
BmsI GCATC 1 cut(s) 595
Bpu14I TTCGAA 1 cut(s) 275
BpuEI CTTGAG 1 cut(s) 58
BsaBI GATNNNNATC 2 cut(s) 222, 441
BsaHI GRCGYC 1 cut(s) 566
BsaJI CCNNGG 3 cut(s) 25, 234, 291
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse21I CCTNAGG 1 cut(s) 154
Bse8I GATNNNNATC 2 cut(s) 222, 441
BseDI CCNNGG 3 cut(s) 25, 234, 291
BseGI GGATG 1 cut(s) 610
BseJI GATNNNNATC 2 cut(s) 222, 441
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMII CTCAG 3 cut(s) 85, 168, 800
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 2 cut(s) 110, 136
Bsh1236I CGCG 1 cut(s) 421
Bsh1285I CGRYCG 1 cut(s) 168
BsiEI CGRYCG 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 416
BsiHKCI CYCGRG 1 cut(s) 290
BslI CCNNNNNNNGG 1 cut(s) 296
BsmAI GTCTC 3 cut(s) 79, 656, 703
BsoBI CYCGRG 1 cut(s) 290
Bsp119I TTCGAA 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 416
Bsp143I GATC 5 cut(s) 161, 371, 436, 442, 741
BspACI CCGC 1 cut(s) 171
BspCNI CTCAG 3 cut(s) 84, 167, 801
BspFNI CGCG 1 cut(s) 421
BspHI TCATGA 1 cut(s) 561
BspLI GGNNCC 1 cut(s) 585
BspMAI CTGCAG 1 cut(s) 463
BspPI GGATC 2 cut(s) 169, 444
BspT104I TTCGAA 1 cut(s) 275
BspTI CTTAAG 1 cut(s) 713
BssECI CCNNGG 3 cut(s) 25, 234, 291
BssMI GATC 5 cut(s) 161, 371, 436, 442, 741
BssNI GRCGYC 1 cut(s) 566
BssT1I CCWWGG 1 cut(s) 25
Bst4CI ACNGT 4 cut(s) 108, 385, 573, 795
Bst6I CTCTTC 2 cut(s) 633, 654
BstACI GRCGYC 1 cut(s) 566
BstAFI CTTAAG 1 cut(s) 713
BstAPI GCANNNNNTGC 1 cut(s) 149
BstBI TTCGAA 1 cut(s) 275
BstDEI CTNAG 3 cut(s) 71, 154, 809
BstF5I GGATG 1 cut(s) 610
BstFNI CGCG 1 cut(s) 421
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 5 cut(s) 164, 374, 439, 445, 744
BstMAI GTCTC 3 cut(s) 79, 656, 703
BstMBI GATC 5 cut(s) 161, 371, 436, 442, 741
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 2 cut(s) 149, 458
BstNSI RCATGY 1 cut(s) 363
BstSFI CTRYAG 1 cut(s) 459
BstUI CGCG 1 cut(s) 421
BstV1I GCAGC 2 cut(s) 110, 136
BstX2I RGATCY 2 cut(s) 371, 436
BstYI RGATCY 2 cut(s) 371, 436
Bsu36I CCTNAGG 1 cut(s) 154
BtsCI GGATG 1 cut(s) 610
BtsIMutI CAGTG 1 cut(s) 381
CciI TCATGA 1 cut(s) 561
CfoI GCGC 1 cut(s) 421
CseI GACGC 1 cut(s) 574
Csp6I GTAC 1 cut(s) 699
CviAII CATG 3 cut(s) 249, 360, 562
CviQI GTAC 1 cut(s) 699
DdeI CTNAG 3 cut(s) 71, 154, 809
DpnI GATC 5 cut(s) 163, 373, 438, 444, 743
DpnII GATC 5 cut(s) 161, 371, 436, 442, 741
DraI TTTAAA 1 cut(s) 63
Eam1104I CTCTTC 2 cut(s) 633, 654
EarI CTCTTC 2 cut(s) 633, 654
EciI GGCGGA 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 380
Eco81I CCTNAGG 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 290
EcoRI GAATTC 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 3 cut(s) 252, 363, 565
FalI AAGNNNNNCTT 2 cut(s) 651, 683
FatI CATG 3 cut(s) 248, 359, 561
FbaI TGATCA 2 cut(s) 442, 741
FblI GTMKAC 1 cut(s) 470
Fnu4HI GCNGC 2 cut(s) 99, 150
FokI GGATG 1 cut(s) 617
Fsp4HI GCNGC 2 cut(s) 99, 150
GlaI GCGC 1 cut(s) 420
GluI GCNGC 2 cut(s) 99, 150
HgaI GACGC 1 cut(s) 574
HhaI GCGC 1 cut(s) 421
Hin1I GRCGYC 1 cut(s) 566
Hin1II CATG 3 cut(s) 252, 363, 565
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HincII GTYRAC 2 cut(s) 14, 775
HindII GTYRAC 2 cut(s) 14, 775
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 9 cut(s) 87, 136, 176, 188, 194, 212, 218, 239, 245
HpaI GTTAAC 1 cut(s) 775
Hpy166II GTNNAC 6 cut(s) 14, 357, 471, 506, 679, 775
Hpy188I TCNGA 7 cut(s) 187, 193, 211, 217, 238, 244, 810
Hpy188III TCNNGA 3 cut(s) 369, 440, 562
Hpy8I GTNNAC 6 cut(s) 14, 357, 471, 506, 679, 775
HpyAV CCTTC 2 cut(s) 282, 595
HpyCH4III ACNGT 4 cut(s) 108, 385, 573, 795
HpyCH4IV ACGT 2 cut(s) 467, 579
HpyCH4V TGCA 4 cut(s) 256, 461, 608, 724
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 458
HpyF3I CTNAG 3 cut(s) 71, 154, 809
HpySE526I ACGT 2 cut(s) 467, 579
Hsp92I GRCGYC 1 cut(s) 566
Hsp92II CATG 3 cut(s) 252, 363, 565
HspAI GCGC 1 cut(s) 419
Ksp22I TGATCA 2 cut(s) 442, 741
KspAI GTTAAC 1 cut(s) 775
Kzo9I GATC 5 cut(s) 161, 371, 436, 442, 741
LmnI GCTCC 1 cut(s) 589
LpnPI CCDG 7 cut(s) 58, 141, 153, 293, 383, 486, 521
Lsp1109I GCAGC 2 cut(s) 110, 136
LweI GCATC 1 cut(s) 595
MaeII ACGT 2 cut(s) 467, 579
MalI GATC 5 cut(s) 163, 373, 438, 444, 743
MboI GATC 5 cut(s) 161, 371, 436, 442, 741
MboII GAAGA 2 cut(s) 650, 671
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 2 cut(s) 371, 436
MhlI GDGCHC 1 cut(s) 416
MluCI AATT 6 cut(s) 199, 205, 283, 339, 614, 650
MlyI GAGTC 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 7 cut(s) 33, 163, 244, 286, 289, 636, 780
MseI TTAA 7 cut(s) 62, 521, 540, 621, 672, 714, 774
MspCI CTTAAG 1 cut(s) 713
MunI CAATTG 1 cut(s) 339
MvnI CGCG 1 cut(s) 421
MwoI GCNNNNNNNGC 2 cut(s) 149, 458
NdeII GATC 5 cut(s) 161, 371, 436, 442, 741
NlaIII CATG 3 cut(s) 252, 363, 565
NlaIV GGNNCC 1 cut(s) 585
NspI RCATGY 1 cut(s) 363
NspV TTCGAA 1 cut(s) 275
PagI TCATGA 1 cut(s) 561
PciI ACATGT 1 cut(s) 359
PfeI GAWTC 8 cut(s) 136, 176, 188, 194, 212, 218, 239, 245
PkrI GCNGC 2 cut(s) 100, 151
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
PscI ACATGT 1 cut(s) 359
PsiI TTATAA 1 cut(s) 513
PspN4I GGNNCC 1 cut(s) 585
PstI CTGCAG 1 cut(s) 463
PsuI RGATCY 2 cut(s) 371, 436
RsaI GTAC 1 cut(s) 700
RsaNI GTAC 1 cut(s) 699
SaqAI TTAA 7 cut(s) 62, 521, 540, 621, 672, 714, 774
SatI GCNGC 2 cut(s) 99, 150
Sau3AI GATC 5 cut(s) 161, 371, 436, 442, 741
SchI GAGTC 1 cut(s) 81
SduI GDGCHC 1 cut(s) 416
SfaNI GCATC 1 cut(s) 595
SfcI CTRYAG 1 cut(s) 459
SfuI TTCGAA 1 cut(s) 275
SmlI CTYRAG 2 cut(s) 37, 713
SmoI CTYRAG 2 cut(s) 37, 713
Sse9I AATT 6 cut(s) 199, 205, 283, 339, 614, 650
SsiI CCGC 1 cut(s) 171
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 4 cut(s) 108, 385, 573, 795
TaiI ACGT 2 cut(s) 470, 582
TaqI TCGA 1 cut(s) 275
TaqII GACCGA 1 cut(s) 154
TasI AATT 6 cut(s) 199, 205, 283, 339, 614, 650
TatI WGTACW 1 cut(s) 698
TfiI GAWTC 8 cut(s) 136, 176, 188, 194, 212, 218, 239, 245
Tru1I TTAA 7 cut(s) 62, 521, 540, 621, 672, 714, 774
Tru9I TTAA 7 cut(s) 62, 521, 540, 621, 672, 714, 774
TscAI CASTG 1 cut(s) 388
TseI GCWGC 2 cut(s) 98, 149
TspDTI ATGAA 4 cut(s) 237, 354, 550, 621
TspRI CASTG 1 cut(s) 388
Vha464I CTTAAG 1 cut(s) 713
XapI RAATTY 3 cut(s) 283, 614, 650
XceI RCATGY 1 cut(s) 363
XmiI GTMKAC 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.