Rroxscaffold_164G00436130

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000164
OG0000368
Physical Location & Seq
Forward (+)
129020 .. 131077
2058 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_164G00436130.1

Sequence Viewer

Length: 762 bp
ATGTCTCAATCGCCTCTCATCAAAGATTACCCAAGACGCCCACTAGAGGTTATCTCCAATAAAATATTGTCAAATGCTCTCAAGCCTCCGGAGGGCGGTGGAAGCCGATCTAGGTCATCCTCCTCGAGGTCCAGGTCGTCATCAGGGTCAAAGTCAACGTCTTCCAATTTGGATTCGTCTGAAGCCCTTAGTTCAAGGGCTATCTTGATCTCAAGTGTTCTGAAGATTCAGGTTGGCCTCTTGGGCACATCAAGAGGACTCCAAAAGGATCTTGATCGAATTACTGAAACTGCAGATACATCTACCCCTGAGGGTTTACACTATGTTTTGAGGGAGGCAAAAATAGCTTTGCTTCGAAATTCTGATTATTGGATATCAACTTATTTATCTGTGACTCCACGTGAAAACATAGCGGATGCAGAGAAATGCTTCAATAAAATTTCAGTTGAAGAGAGGGCCAAATTTGATGAAGAAACTCTTGTTAATGTGAACAACAAAAAGAAGAAAAGCCCAACGAGCAAGAAAGACAACAAATTCCAAAATGAATATATAGTGGTTACACTATTGGTCGCTACTGAAGGCGAGCATATGTTGCCCACCATGAATGGCAGTGCTGAGTTACAGGCAGCATTGCAAAGCCTCAAATGCATATCCTCAAAGAATATAATAGCAACTAAAGTGTTATGGACGCCACAGCAAGAAAATGACGTGCTATTGGAGCAGGAACTACTTGAAGATTACCCACTTCTGAAGCGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

253

Amino Acids

28.09

Weight (kDa)

8.92

Isoelectric Point (pI)

65.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 72 - 252 1.4e-63 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 124
AccIII TCCGGA 1 cut(s) 88
AciI CCGC 2 cut(s) 96, 413
AclWI GGATC 1 cut(s) 276
AcsI RAATTY 4 cut(s) 358, 438, 461, 533
AcuI CTGAAG 3 cut(s) 201, 242, 597
AcvI CACGTG 1 cut(s) 401
AcyI GRCGYC 2 cut(s) 37, 689
AfeI AGCGCT 1 cut(s) 755
AfiI CCNNNNNNNGG 4 cut(s) 46, 92, 95, 126
AgsI TTSAA 4 cut(s) 195, 433, 449, 734
AjiI CACGTC 1 cut(s) 709
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 1 cut(s) 347
AluI AGCT 1 cut(s) 347
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 276
Ama87I CYCGRG 1 cut(s) 124
Aor13HI TCCGGA 1 cut(s) 88
Aor51HI AGCGCT 1 cut(s) 755
AoxI GGCC 2 cut(s) 235, 456
ApeKI GCWGC 1 cut(s) 626
ApoI RAATTY 4 cut(s) 358, 438, 461, 533
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
Asp700I GAANNNNTTC 1 cut(s) 428
AspLEI GCGC 1 cut(s) 756
AspS9I GGNCC 2 cut(s) 129, 456
AsuII TTCGAA 1 cut(s) 355
AvaI CYCGRG 1 cut(s) 124
AvaII GGWCC 1 cut(s) 129
AxyI CCTNAGG 1 cut(s) 309
BaeGI GKGCMC 1 cut(s) 248
BbrPI CACGTG 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 638
BciT130I CCWGG 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 2 cut(s) 44, 111
BfmI CTRYAG 1 cut(s) 291
BfoI RGCGCY 1 cut(s) 757
BglI GCCNNNNNGGC 1 cut(s) 243
BisI GCNGC 1 cut(s) 627
BlsI GCNGC 1 cut(s) 628
Bme1390I CCNGG 1 cut(s) 133
Bme18I GGWCC 1 cut(s) 129
BmeT110I CYCGRG 1 cut(s) 124
BmgBI CACGTC 1 cut(s) 709
BmgT120I GGNCC 2 cut(s) 129, 456
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 1 cut(s) 406
BpiI GAAGAC 1 cut(s) 153
BplI GAGNNNNNCTC 2 cut(s) 38, 70
Bpu14I TTCGAA 1 cut(s) 355
BpuEI CTTGAG 2 cut(s) 65, 196
BsaAI YACGTR 1 cut(s) 401
BsaBI GATNNNNATC 1 cut(s) 273
BsaHI GRCGYC 2 cut(s) 37, 689
BsaWI WCCGGW 1 cut(s) 88
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 92, 95, 126
Bse21I CCTNAGG 1 cut(s) 309
Bse3DI GCAATG 1 cut(s) 629
Bse8I GATNNNNATC 1 cut(s) 273
BseAI TCCGGA 1 cut(s) 88
BseBI CCWGG 1 cut(s) 133
BseGI GGATG 2 cut(s) 116, 421
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 4 cut(s) 46, 92, 95, 126
BseMI GCAATG 1 cut(s) 629
BseMII CTCAG 2 cut(s) 300, 606
BseRI GAGGAG 1 cut(s) 112
BseSI GKGCMC 1 cut(s) 248
BseXI GCAGC 1 cut(s) 638
BshFI GGCC 2 cut(s) 237, 458
BsiHKCI CYCGRG 1 cut(s) 124
BsiSI CCGG 1 cut(s) 89
BslI CCNNNNNNNGG 4 cut(s) 46, 92, 95, 126
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 2 cut(s) 237, 458
BsoBI CYCGRG 1 cut(s) 124
Bsp119I TTCGAA 1 cut(s) 355
Bsp1286I GDGCHC 1 cut(s) 248
Bsp13I TCCGGA 1 cut(s) 88
Bsp143I GATC 4 cut(s) 107, 207, 268, 274
BspACI CCGC 2 cut(s) 96, 413
BspANI GGCC 2 cut(s) 237, 458
BspCNI CTCAG 2 cut(s) 301, 607
BspEI TCCGGA 1 cut(s) 88
BspMAI CTGCAG 1 cut(s) 295
BspPI GGATC 1 cut(s) 276
BspT104I TTCGAA 1 cut(s) 355
BsrDI GCAATG 1 cut(s) 629
BssMI GATC 4 cut(s) 107, 207, 268, 274
BssNI GRCGYC 2 cut(s) 37, 689
Bst2UI CCWGG 1 cut(s) 133
Bst6I CTCTTC 1 cut(s) 444
BstACI GRCGYC 2 cut(s) 37, 689
BstAPI GCANNNNNTGC 1 cut(s) 592
BstBAI YACGTR 1 cut(s) 401
BstBI TTCGAA 1 cut(s) 355
BstC8I GCNNGC 1 cut(s) 584
BstDEI CTNAG 3 cut(s) 188, 309, 615
BstENI CCTNNNNNAGG 1 cut(s) 124
BstF5I GGATG 2 cut(s) 116, 421
BstH2I RGCGCY 1 cut(s) 757
BstHHI GCGC 1 cut(s) 756
BstKTI GATC 4 cut(s) 110, 210, 271, 277
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 4 cut(s) 107, 207, 268, 274
BstMWI GCNNNNNNNGC 7 cut(s) 102, 243, 344, 516, 592, 645, 718
BstNI CCWGG 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 131
BstSFI CTRYAG 1 cut(s) 291
BstSLI GKGCMC 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 638
BstV2I GAAGAC 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
Bsu36I CCTNAGG 1 cut(s) 309
BsuRI GGCC 2 cut(s) 237, 458
BtrI CACGTC 1 cut(s) 709
BtsCI GGATG 2 cut(s) 116, 421
BtsI GCAGTG 1 cut(s) 616
BtsIMutI CAGTG 1 cut(s) 616
Cac8I GCNNGC 1 cut(s) 584
CfoI GCGC 1 cut(s) 756
Cfr13I GGNCC 2 cut(s) 129, 456
CseI GACGC 2 cut(s) 45, 697
CviAII CATG 1 cut(s) 601
CviJI RGCY 9 cut(s) 85, 105, 185, 200, 237, 347, 458, 510, 639
CviKI_1 RGCY 9 cut(s) 85, 105, 185, 200, 237, 347, 458, 510, 639
DdeI CTNAG 3 cut(s) 188, 309, 615
DpnI GATC 4 cut(s) 109, 209, 270, 276
DpnII GATC 4 cut(s) 107, 207, 268, 274
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
Eco32I GATATC 1 cut(s) 375
Eco47I GGWCC 1 cut(s) 129
Eco47III AGCGCT 1 cut(s) 755
Eco57I CTGAAG 3 cut(s) 201, 242, 597
Eco72I CACGTG 1 cut(s) 401
Eco81I CCTNAGG 1 cut(s) 309
Eco88I CYCGRG 1 cut(s) 124
EcoNI CCTNNNNNAGG 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 131
EcoRV GATATC 1 cut(s) 375
EcoT22I ATGCAT 1 cut(s) 650
FaeI CATG 1 cut(s) 604
FalI AAGNNNNNCTT 2 cut(s) 462, 494
FatI CATG 1 cut(s) 600
FauNDI CATATG 1 cut(s) 588
Fnu4HI GCNGC 1 cut(s) 627
FokI GGATG 2 cut(s) 103, 428
Fsp4HI GCNGC 1 cut(s) 627
FspBI CTAG 2 cut(s) 44, 111
GlaI GCGC 1 cut(s) 755
GluI GCNGC 1 cut(s) 627
HaeII RGCGCY 1 cut(s) 757
HaeIII GGCC 2 cut(s) 237, 458
HapII CCGG 1 cut(s) 89
HgaI GACGC 2 cut(s) 45, 697
HhaI GCGC 1 cut(s) 756
Hin1I GRCGYC 2 cut(s) 37, 689
Hin1II CATG 1 cut(s) 604
Hin6I GCGC 1 cut(s) 754
HinP1I GCGC 1 cut(s) 754
HincII GTYRAC 1 cut(s) 156
HindII GTYRAC 1 cut(s) 156
HinfI GANTC 4 cut(s) 173, 226, 258, 394
HpaII CCGG 1 cut(s) 89
Hpy166II GTNNAC 3 cut(s) 156, 317, 490
Hpy188I TCNGA 4 cut(s) 181, 222, 364, 750
Hpy188III TCNNGA 4 cut(s) 89, 205, 252, 272
Hpy8I GTNNAC 3 cut(s) 156, 317, 490
HpyAV CCTTC 1 cut(s) 572
HpyCH4IV ACGT 3 cut(s) 158, 400, 708
HpyCH4V TGCA 4 cut(s) 293, 419, 634, 648
HpyF10VI GCNNNNNNNGC 7 cut(s) 102, 243, 344, 516, 592, 645, 718
HpyF3I CTNAG 3 cut(s) 188, 309, 615
HpySE526I ACGT 3 cut(s) 158, 400, 708
Hsp92I GRCGYC 2 cut(s) 37, 689
Hsp92II CATG 1 cut(s) 604
HspAI GCGC 1 cut(s) 754
Kpn2I TCCGGA 1 cut(s) 88
Kzo9I GATC 4 cut(s) 107, 207, 268, 274
LmnI GCTCC 1 cut(s) 718
LpnPI CCDG 8 cut(s) 102, 118, 129, 145, 215, 321, 608, 707
Lsp1109I GCAGC 1 cut(s) 638
LweI GCATC 1 cut(s) 406
MaeI CTAG 2 cut(s) 44, 111
MaeII ACGT 3 cut(s) 158, 400, 708
MaeIII GTNAC 3 cut(s) 391, 556, 618
MalI GATC 4 cut(s) 109, 209, 270, 276
MboI GATC 4 cut(s) 107, 207, 268, 274
MboII GAAGA 6 cut(s) 153, 235, 461, 482, 514, 746
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 1 cut(s) 248
MluCI AATT 6 cut(s) 166, 279, 358, 438, 461, 533
MlyI GAGTC 2 cut(s) 252, 388
Mph1103I ATGCAT 1 cut(s) 650
MroI TCCGGA 1 cut(s) 88
MroXI GAANNNNTTC 1 cut(s) 428
MseI TTAA 2 cut(s) 483, 760
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 133
MvaI CCWGG 1 cut(s) 133
MwoI GCNNNNNNNGC 7 cut(s) 102, 243, 344, 516, 592, 645, 718
NdeI CATATG 1 cut(s) 588
NdeII GATC 4 cut(s) 107, 207, 268, 274
NlaIII CATG 1 cut(s) 604
NmuCI GTSAC 1 cut(s) 391
NsiI ATGCAT 1 cut(s) 650
NspV TTCGAA 1 cut(s) 355
PaeR7I CTCGAG 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 428
PfeI GAWTC 2 cut(s) 173, 226
PkrI GCNGC 1 cut(s) 628
PleI GAGTC 2 cut(s) 252, 388
PmaCI CACGTG 1 cut(s) 401
PmlI CACGTG 1 cut(s) 401
PpsI GAGTC 2 cut(s) 252, 388
Ppu21I YACGTR 1 cut(s) 401
Psp6I CCWGG 1 cut(s) 131
PspCI CACGTG 1 cut(s) 401
PspGI CCWGG 1 cut(s) 131
PspPI GGNCC 2 cut(s) 129, 456
PspXI VCTCGAGB 1 cut(s) 124
PstI CTGCAG 1 cut(s) 295
PsuI RGATCY 1 cut(s) 268
SaqAI TTAA 2 cut(s) 483, 760
SatI GCNGC 1 cut(s) 627
Sau3AI GATC 4 cut(s) 107, 207, 268, 274
Sau96I GGNCC 2 cut(s) 129, 456
SchI GAGTC 2 cut(s) 252, 388
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 1 cut(s) 248
SetI ASST 9 cut(s) 51, 116, 131, 137, 161, 234, 349, 403, 711
SfaNI GCATC 1 cut(s) 406
SfcI CTRYAG 1 cut(s) 291
Sfr274I CTCGAG 1 cut(s) 124
SfuI TTCGAA 1 cut(s) 355
SinI GGWCC 1 cut(s) 129
SlaI CTCGAG 1 cut(s) 124
SmlI CTYRAG 3 cut(s) 80, 124, 211
SmoI CTYRAG 3 cut(s) 80, 124, 211
Sse9I AATT 6 cut(s) 166, 279, 358, 438, 461, 533
SsiI CCGC 2 cut(s) 96, 413
SspI AATATT 1 cut(s) 66
SspMI CTAG 2 cut(s) 44, 111
StyD4I CCNGG 1 cut(s) 131
TaiI ACGT 3 cut(s) 161, 403, 711
TaqI TCGA 3 cut(s) 125, 277, 355
TasI AATT 6 cut(s) 166, 279, 358, 438, 461, 533
TfiI GAWTC 2 cut(s) 173, 226
Tru1I TTAA 2 cut(s) 483, 760
Tru9I TTAA 2 cut(s) 483, 760
TscAI CASTG 1 cut(s) 616
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 1 cut(s) 626
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 3 cut(s) 483, 558, 617
TspRI CASTG 1 cut(s) 616
VpaK11BI GGWCC 1 cut(s) 129
XagI CCTNNNNNAGG 1 cut(s) 124
XapI RAATTY 4 cut(s) 358, 438, 461, 533
XhoI CTCGAG 1 cut(s) 124
XmnI GAANNNNTTC 1 cut(s) 428
XspI CTAG 2 cut(s) 44, 111
Zsp2I ATGCAT 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.