Rh2DG349300

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000368
Physical Location & Seq
Forward (+)
48824222 .. 48825166
945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG349300.1

Sequence Viewer

Length: 456 bp
ATGACGGCTTTGCTTCGAAATCTTGATCATTGCCTCTCAAGCTATTCATCTGTTATACGAAAATCCAAGATAGAGGATGCAGAGGAATGCTTCAAACTATTTTCTTTGGAAGAGGCGGCTAAATTTGACGAAGTGACCCTTGCCAATGTGAACAACTTCAAAAAGCGCTCAAAAAGCCAGTCACCTAATGCAATCCACAAAGAATATATAGTGGTTACAATTCTGGTGGCTACTGATGGAGAACATAAGTTGCCCACCATCAGTGGCACTCGTGACTTGAAGAAAGCATTACATAAACTTGGAGCCATTTCCTCGAACACAATTACTTCTAGTGATGATTTCTTCCAAGGAAGCAAGCTGCTTGTCATAGAAAAAAAGCAAGCCCTGCAAGCTGACTGCTTCCCATATATGGAACAATTGTTATATTTATACAAGTCCAAATGTTGTTCATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

151

Amino Acids

16.96

Weight (kDa)

8.54

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 2 - 108 2.2e-24 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 116
AcsI RAATTY 1 cut(s) 122
AfeI AGCGCT 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 409
AgsI TTSAA 3 cut(s) 94, 160, 280
AluBI AGCT 3 cut(s) 42, 358, 392
AluI AGCT 3 cut(s) 42, 358, 392
Aor51HI AGCGCT 1 cut(s) 167
ApeKI GCWGC 1 cut(s) 358
ApoI RAATTY 1 cut(s) 122
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
Asp700I GAANNNNTTC 1 cut(s) 155
AspLEI GCGC 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 174
AsuII TTCGAA 1 cut(s) 16
BauI CACGAG 1 cut(s) 270
BbvI GCAGC 1 cut(s) 345
BccI CCATC 2 cut(s) 230, 266
BceAI ACGGC 1 cut(s) 21
BclI TGATCA 1 cut(s) 25
BfaI CTAG 1 cut(s) 330
BfoI RGCGCY 1 cut(s) 169
BisI GCNGC 2 cut(s) 117, 359
BlsI GCNGC 2 cut(s) 118, 360
BmiI GGNNCC 1 cut(s) 304
BmsI GCATC 1 cut(s) 67
Bpu14I TTCGAA 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 346
Bsc4I CCNNNNNNNGG 1 cut(s) 409
Bse1I ACTGG 1 cut(s) 178
Bse3DI GCAATG 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 346
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 409
BseMI GCAATG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 178
BseXI GCAGC 1 cut(s) 345
BslI CCNNNNNNNGG 1 cut(s) 409
BsmI GAATGC 1 cut(s) 92
Bsp119I TTCGAA 1 cut(s) 16
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 304
BspT104I TTCGAA 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 28
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 346
BssMI GATC 1 cut(s) 25
BssSI CACGAG 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 346
Bst2BI CACGAG 1 cut(s) 270
Bst6I CTCTTC 1 cut(s) 105
BstAPI GCANNNNNTGC 1 cut(s) 385
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 3 cut(s) 356, 381, 390
BstF5I GGATG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 4 cut(s) 39, 174, 385, 389
BstV1I GCAGC 1 cut(s) 345
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 268
Cac8I GCNNGC 3 cut(s) 356, 381, 390
CfoI GCGC 1 cut(s) 168
CspCI CAANNNNNGTGG 2 cut(s) 207, 242
CviJI RGCY 9 cut(s) 8, 42, 119, 177, 230, 305, 358, 383, 392
CviKI_1 RGCY 9 cut(s) 8, 42, 119, 177, 230, 305, 358, 383, 392
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 346
Eco47III AGCGCT 1 cut(s) 167
EcoT14I CCWWGG 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 346
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 2 cut(s) 117, 359
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 2 cut(s) 117, 359
FspBI CTAG 1 cut(s) 330
GlaI GCGC 1 cut(s) 167
GluI GCNGC 2 cut(s) 117, 359
HaeII RGCGCY 1 cut(s) 169
HhaI GCGC 1 cut(s) 168
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HphI GGTGA 1 cut(s) 174
Hpy166II GTNNAC 1 cut(s) 151
Hpy188III TCNNGA 2 cut(s) 23, 272
Hpy8I GTNNAC 1 cut(s) 151
HpyCH4V TGCA 3 cut(s) 80, 191, 388
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 174, 385, 389
HspAI GCGC 1 cut(s) 166
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 1 cut(s) 302
LpnPI CCDG 3 cut(s) 191, 209, 398
Lsp1109I GCAGC 1 cut(s) 345
LweI GCATC 1 cut(s) 67
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 4 cut(s) 133, 180, 214, 272
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 3 cut(s) 122, 292, 334
MfeI CAATTG 1 cut(s) 416
MluCI AATT 4 cut(s) 122, 219, 321, 416
MnlI CCTC 5 cut(s) 44, 67, 76, 106, 322
MroXI GAANNNNTTC 1 cut(s) 155
MunI CAATTG 1 cut(s) 416
Mva1269I GAATGC 1 cut(s) 92
MwoI GCNNNNNNNGC 4 cut(s) 39, 174, 385, 389
NdeII GATC 1 cut(s) 25
NlaIV GGNNCC 1 cut(s) 304
NmuCI GTSAC 3 cut(s) 133, 180, 272
NspV TTCGAA 1 cut(s) 16
PctI GAATGC 1 cut(s) 92
PdmI GAANNNNTTC 1 cut(s) 155
PkrI GCNGC 2 cut(s) 118, 360
PspN4I GGNNCC 1 cut(s) 304
SatI GCNGC 2 cut(s) 117, 359
Sau3AI GATC 1 cut(s) 25
SetI ASST 4 cut(s) 44, 187, 360, 394
SfaNI GCATC 1 cut(s) 67
SfuI TTCGAA 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 4 cut(s) 122, 219, 321, 416
SsiI CCGC 1 cut(s) 116
SspMI CTAG 1 cut(s) 330
StyI CCWWGG 1 cut(s) 346
TaqI TCGA 2 cut(s) 16, 314
TasI AATT 4 cut(s) 122, 219, 321, 416
TauI GCSGC 1 cut(s) 119
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 3 cut(s) 133, 180, 272
TseI GCWGC 1 cut(s) 358
Tsp45I GTSAC 3 cut(s) 133, 180, 272
TspDTI ATGAA 2 cut(s) 36, 438
TspRI CASTG 1 cut(s) 268
XapI RAATTY 1 cut(s) 122
XmnI GAANNNNTTC 1 cut(s) 155
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.