Rh4BG107500

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000368
Physical Location & Seq
Forward (+)
18319902 .. 18323042
3141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG107500.1

Sequence Viewer

Length: 531 bp
ATGGCTCTGAACAGGAATCCGGCAATGGCTGCCATGCTGTTAGGGTTGTTGTTATTGATGCATGGCCCCACTTCGGCATTGGCCCGCCTATCGGGCGGCGCAGTCGGCGGAGGCTCCTTCTCATCCGGCGGCTCTTCTTCATCATCATCCTCATCTTCTTTTATGTACTACAATTCCGACGATGGTTCGTCCTCTTCGTCGTCGTCCTCAGTGATCTTCATCTGGATAATCATCGGATTCATCGCTGCAGCTATCGCGTTTTTTGCGTTTGTTTTTGTGATAGTCTGCTGCTGCAAAAATAAGGGAGAAAAATGTTCGAGTTTTTCAACTAGTGTTCTGAAGCTCCAGGTTGGTTTATTGGGCTCAGCACCAACCCTCCAAACGGATCTCAATCGGATTGCTGAAACCGCAGATACTTCCACCTCTCAGGGTTGGAGCAATGTTTTGGCAGGGGCAACAATAAGTTTGCTTCAGAATCTTGACTATTGCATCTCAGGTTATTCATCAGTAAGTCGAATACCATCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

176

Amino Acids

18.05

Weight (kDa)

7.6

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 110 - 172 8.5e-16 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 257
AciI CCGC 5 cut(s) 85, 96, 108, 129, 408
AclWI GGATC 1 cut(s) 393
AcuI CTGAAG 2 cut(s) 359, 455
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 3 cut(s) 73, 91, 382
AgsI TTSAA 1 cut(s) 327
AhlI ACTAGT 1 cut(s) 329
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 2 cut(s) 251, 343
AluI AGCT 2 cut(s) 251, 343
AlwI GGATC 1 cut(s) 393
AoxI GGCC 2 cut(s) 64, 81
ApeKI GCWGC 5 cut(s) 29, 245, 248, 288, 291
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 2 cut(s) 65, 82
BanII GRGCYC 1 cut(s) 365
BbvI GCAGC 5 cut(s) 16, 232, 260, 275, 278
BccI CCATC 2 cut(s) 176, 529
BciT130I CCWGG 1 cut(s) 347
BcuI ACTAGT 1 cut(s) 329
BfaI CTAG 1 cut(s) 330
BfmI CTRYAG 1 cut(s) 246
BglI GCCNNNNNGGC 1 cut(s) 93
BisI GCNGC 7 cut(s) 30, 97, 130, 246, 249, 289, 292
BlpI GCTNAGC 1 cut(s) 364
BlsI GCNGC 7 cut(s) 31, 98, 131, 247, 250, 290, 293
Bme1390I CCNGG 1 cut(s) 347
BmgT120I GGNCC 2 cut(s) 65, 82
BmiI GGNNCC 2 cut(s) 67, 115
BmrFI CCNGG 1 cut(s) 347
BmsI GCATC 2 cut(s) 48, 498
BpmI CTGGAG 1 cut(s) 329
Bpu1102I GCTNAGC 1 cut(s) 364
BsaBI GATNNNNATC 3 cut(s) 218, 230, 390
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 91, 382
Bse3DI GCAATG 2 cut(s) 30, 445
Bse8I GATNNNNATC 3 cut(s) 218, 230, 390
BseBI CCWGG 1 cut(s) 347
BseGI GGATG 2 cut(s) 122, 146
BseJI GATNNNNATC 3 cut(s) 218, 230, 390
BseLI CCNNNNNNNGG 3 cut(s) 73, 91, 382
BseMI GCAATG 2 cut(s) 30, 445
BseMII CTCAG 4 cut(s) 222, 378, 440, 507
BseXI GCAGC 5 cut(s) 16, 232, 260, 275, 278
Bsh1236I CGCG 1 cut(s) 257
BshFI GGCC 2 cut(s) 66, 83
BsiSI CCGG 2 cut(s) 20, 126
BslI CCNNNNNNNGG 3 cut(s) 73, 91, 382
BsnI GGCC 2 cut(s) 66, 83
Bsp1286I GDGCHC 1 cut(s) 365
Bsp143I GATC 2 cut(s) 213, 385
Bsp1720I GCTNAGC 1 cut(s) 364
BspACI CCGC 5 cut(s) 85, 96, 108, 129, 408
BspANI GGCC 2 cut(s) 66, 83
BspCNI CTCAG 4 cut(s) 221, 377, 439, 506
BspFNI CGCG 1 cut(s) 257
BspLI GGNNCC 2 cut(s) 67, 115
BspMAI CTGCAG 1 cut(s) 250
BspPI GGATC 1 cut(s) 393
BspQI GCTCTTC 1 cut(s) 139
BsrDI GCAATG 2 cut(s) 30, 445
BssMI GATC 2 cut(s) 213, 385
Bst2UI CCWGG 1 cut(s) 347
Bst6I CTCTTC 2 cut(s) 139, 199
BstAPI GCANNNNNTGC 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 4 cut(s) 208, 364, 426, 493
BstF5I GGATG 2 cut(s) 122, 146
BstFNI CGCG 1 cut(s) 257
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 2 cut(s) 216, 388
BstMBI GATC 2 cut(s) 213, 385
BstMWI GCNNNNNNNGC 6 cut(s) 29, 93, 105, 254, 263, 407
BstNI CCWGG 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 345
BstSFI CTRYAG 1 cut(s) 246
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 5 cut(s) 16, 232, 260, 275, 278
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
BsuRI GGCC 2 cut(s) 66, 83
BtgZI GCGATG 1 cut(s) 226
BtsCI GGATG 2 cut(s) 122, 146
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 85
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 65, 82
Csp6I GTAC 1 cut(s) 166
CviAII CATG 2 cut(s) 34, 62
CviJI RGCY 9 cut(s) 5, 29, 66, 83, 114, 132, 251, 343, 363
CviKI_1 RGCY 9 cut(s) 5, 29, 66, 83, 114, 132, 251, 343, 363
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 4 cut(s) 208, 364, 426, 493
DpnI GATC 2 cut(s) 215, 387
DpnII GATC 2 cut(s) 213, 385
Eam1104I CTCTTC 2 cut(s) 139, 199
EarI CTCTTC 2 cut(s) 139, 199
EciI GGCGGA 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 365
Eco57I CTGAAG 2 cut(s) 359, 455
EcoRII CCWGG 1 cut(s) 345
EcoT22I ATGCAT 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 365
FaeI CATG 2 cut(s) 37, 65
FaiI YATR 3 cut(s) 35, 63, 164
FatI CATG 2 cut(s) 33, 61
FauI CCCGC 1 cut(s) 92
Fnu4HI GCNGC 7 cut(s) 30, 97, 130, 246, 249, 289, 292
FokI GGATG 2 cut(s) 109, 133
FriOI GRGCYC 1 cut(s) 365
Fsp4HI GCNGC 7 cut(s) 30, 97, 130, 246, 249, 289, 292
FspBI CTAG 1 cut(s) 330
GlaI GCGC 1 cut(s) 100
GluI GCNGC 7 cut(s) 30, 97, 130, 246, 249, 289, 292
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 2 cut(s) 66, 83
HapII CCGG 2 cut(s) 20, 126
HhaI GCGC 1 cut(s) 101
Hin1II CATG 2 cut(s) 37, 65
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HinfI GANTC 3 cut(s) 16, 237, 475
HpaII CCGG 2 cut(s) 20, 126
Hpy188I TCNGA 6 cut(s) 9, 178, 236, 339, 396, 474
Hpy188III TCNNGA 2 cut(s) 223, 479
Hpy99I CGWCG 3 cut(s) 182, 202, 205
HpyAV CCTTC 1 cut(s) 127
HpyCH4V TGCA 4 cut(s) 61, 248, 294, 489
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 93, 105, 254, 263, 407
HpyF3I CTNAG 4 cut(s) 208, 364, 426, 493
Hsp92II CATG 2 cut(s) 37, 65
HspAI GCGC 1 cut(s) 99
Kzo9I GATC 2 cut(s) 213, 385
LguI GCTCTTC 1 cut(s) 139
LmnI GCTCC 3 cut(s) 119, 348, 435
LpnPI CCDG 8 cut(s) 33, 139, 208, 332, 359, 413, 435, 480
Lsp1109I GCAGC 5 cut(s) 16, 232, 260, 275, 278
LweI GCATC 2 cut(s) 48, 498
MaeI CTAG 1 cut(s) 330
MalI GATC 2 cut(s) 215, 387
MboI GATC 2 cut(s) 213, 385
MboII GAAGA 5 cut(s) 126, 129, 147, 186, 208
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 1 cut(s) 365
MluCI AATT 1 cut(s) 172
MmeI TCCRAC 2 cut(s) 201, 413
MnlI CCTC 6 cut(s) 104, 160, 202, 217, 386, 433
Mph1103I ATGCAT 1 cut(s) 63
MspI CCGG 2 cut(s) 20, 126
MspR9I CCNGG 1 cut(s) 347
MvaI CCWGG 1 cut(s) 347
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 6 cut(s) 29, 93, 105, 254, 263, 407
NdeII GATC 2 cut(s) 213, 385
NlaIII CATG 2 cut(s) 37, 65
NlaIV GGNNCC 2 cut(s) 67, 115
NsiI ATGCAT 1 cut(s) 63
PciSI GCTCTTC 1 cut(s) 139
PcsI WCGNNNNNNNCGW 1 cut(s) 194
PfeI GAWTC 3 cut(s) 16, 237, 475
PkrI GCNGC 7 cut(s) 31, 98, 131, 247, 250, 290, 293
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PspN4I GGNNCC 2 cut(s) 67, 115
PspPI GGNCC 2 cut(s) 65, 82
PstI CTGCAG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 385
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
SapI GCTCTTC 1 cut(s) 139
SatI GCNGC 7 cut(s) 30, 97, 130, 246, 249, 289, 292
Sau3AI GATC 2 cut(s) 213, 385
Sau96I GGNCC 2 cut(s) 65, 82
ScrFI CCNGG 1 cut(s) 347
SduI GDGCHC 1 cut(s) 365
SetI ASST 5 cut(s) 253, 345, 351, 425, 499
SfaNI GCATC 2 cut(s) 48, 498
SfcI CTRYAG 1 cut(s) 246
SpeI ACTAGT 1 cut(s) 329
Sse9I AATT 1 cut(s) 172
SsiI CCGC 5 cut(s) 85, 96, 108, 129, 408
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 345
TaqI TCGA 2 cut(s) 317, 514
TasI AATT 1 cut(s) 172
TatI WGTACW 1 cut(s) 165
TauI GCSGC 2 cut(s) 99, 132
TfiI GAWTC 3 cut(s) 16, 237, 475
TscAI CASTG 1 cut(s) 216
TseI GCWGC 5 cut(s) 29, 245, 248, 288, 291
TspDTI ATGAA 4 cut(s) 129, 208, 229, 492
TspGWI ACGGA 1 cut(s) 398
TspRI CASTG 1 cut(s) 216
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XspI CTAG 1 cut(s) 330
Zsp2I ATGCAT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.