FvH4_5g29750

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000368
Physical Location & Seq
Reverse (-)
20664458 .. 20666875
2418 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29750.t1

Sequence Viewer

Length: 1380 bp
ATGGCTACATCTGCGTTGCTCGGAGCCAACCCTCTGACCTTATTGAAACATAGCTCCACAATCCCCTTCTCCCGTCTTCGTTCTCTCCCCACCAAACCACTCCAAGTCAGCACCGCCTCCTTCAAAACTCTACAACTATCTTTTCATTCTTCCCCCAAATATGATCTCAAACTCAAATGCTCCTCGGACAAGAACCACTTCACATCATCAGACCAGGCATCTCAAAACCCACTTGAGACCATCGCCAATGAAATATTATCGAATGTTCTCGAGGGACTGCAAACACCTGCGGCAGAGAACCCACCATTTGATGCTATCTTGAACGAAACATTAACGAGTGCTCTCAAGGGAATCAAAACACCTACAATGGATAATCCTAACCCACTTGAGGCTATCTTCAATGAAACATTAGCAAGTGCTCTCAAGGTACTCAAGACACCTGCCATGGCTGCCGTGCTGTTAAGTTTGTTGTTGACGTTTCACCCTAACTTGGCGTGGGCGGCCTCGGGTGGTCGGGTCGGGGGAAGCTCCTTCTCTTCACGCTCGCGCTCTTCGTCGTCGTCATCGTCACGCTCGTCATCTTATTCTTCTTCATCGTATCGTTCTTCTTCACCTTCGTATTCGTATAAGTCGTATTCTTCATATTCAAACCCTAGGCCTTCATCATCATCGAGTTCTTCGTCTAATATCTCCATGTCCGAGGCCGACACTAAACTCCTGAACATAATCCTTGCGATTTTGGTTCTGATGGTTGTTGCTGGGTGCATCTTTCATTTGGCAAGTGTTACGGAGACCTCAAACTTTGTGAATCGTGTTGCTCCGACCTCAAACGTTGTTAAGCTTCAGGTTGGTTTGTTAGGTACAGTCCGAGCACTCCAAAGAGATCTTGATCGTATCGCTGAAACTGCTGATACCTCAACCCCCAAGGGCTTGGGCTATATTTTGACAGAGGCAACTGTAGCTTTGCTCAGACATCCTGATTATTGGTTCTCAAGTTATTCATCTGTTACACCAAACTATAACATGGAGGATGCAGAGAAATGCTTCAATAAAGTTTCTATTGAAGAGAGGGCTAAATTTGATGAGGAGACGCTTGTCAACGTGAACAACAAGAGAAGGAAAGTCTCGAGAGGCAAGACTGATGATGGATTTCAAAACCAATATATAGTGGTGACATTGCTGGTTGCAATTGAAGGGAAGCATAAGTTGCCCGCCACCATAAATAGTAGCGATGACTTGAAGGAAGAACTGAAAAATCTTGGATTTATTCCTCCAATGAATATATTGGCAGCAGAAGTGTTATGGACTCCACAGGAAGAAAATGACACACTGTCGGAGGAGGAACTGATAGAAGATTACCCACTTCTGAAGCGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

460

Amino Acids

50.05

Weight (kDa)

6.68

Isoelectric Point (pI)

54.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 277 - 458 4.6e-66 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 295, 448
Acc36I ACCTGC 2 cut(s) 295, 448
AccII CGCG 1 cut(s) 547
AciI CCGC 4 cut(s) 114, 290, 500, 1212
AclI AACGTT 1 cut(s) 831
AcsI RAATTY 1 cut(s) 1076
AcuI CTGAAG 1 cut(s) 827
AfaI GTAC 2 cut(s) 429, 862
AfiI CCNNNNNNNGG 2 cut(s) 388, 490
AhdI GACNNNNNGTC 1 cut(s) 1330
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 4 cut(s) 54, 528, 841, 962
AluI AGCT 4 cut(s) 54, 528, 841, 962
Alw21I GWGCWC 3 cut(s) 343, 421, 874
Alw26I GTCTC 4 cut(s) 230, 785, 1082, 1129
Ama87I CYCGRG 3 cut(s) 269, 505, 1126
AoxI GGCC 3 cut(s) 501, 656, 702
ApeKI GCWGC 2 cut(s) 449, 1289
ApoI RAATTY 1 cut(s) 1076
Asp700I GAANNNNTTC 2 cut(s) 197, 1043
AspA2I CCTAGG 1 cut(s) 653
AspLEI GCGC 1 cut(s) 549
AsuHPI GGTGA 3 cut(s) 473, 603, 1183
AvaI CYCGRG 3 cut(s) 269, 505, 1126
AvrII CCTAGG 1 cut(s) 653
BbsI GAAGAC 1 cut(s) 68
Bbv12I GWGCWC 3 cut(s) 343, 421, 874
BbvI GCAGC 2 cut(s) 436, 1301
BccI CCATC 3 cut(s) 248, 742, 1139
BceAI ACGGC 1 cut(s) 437
BciT130I CCWGG 1 cut(s) 215
BcoDI GTCTC 4 cut(s) 230, 785, 1082, 1129
BfaI CTAG 1 cut(s) 654
BfmI CTRYAG 1 cut(s) 957
BfuAI ACCTGC 2 cut(s) 295, 448
BglII AGATCT 1 cut(s) 883
BisI GCNGC 4 cut(s) 291, 450, 501, 1290
BlnI CCTAGG 1 cut(s) 653
BlsI GCNGC 4 cut(s) 292, 451, 502, 1291
Bme1390I CCNGG 1 cut(s) 215
BmeRI GACNNNNNGTC 1 cut(s) 1330
BmeT110I CYCGRG 3 cut(s) 269, 505, 1126
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 215
BmsI GCATC 4 cut(s) 227, 301, 774, 1021
BoxI GACNNNNGTC 1 cut(s) 1094
BpiI GAAGAC 1 cut(s) 68
BpuEI CTTGAG 6 cut(s) 254, 329, 407, 407, 416, 976
BsaBI GATNNNNATC 1 cut(s) 888
BsaI GGTCTC 2 cut(s) 230, 785
BsaJI CCNNGG 6 cut(s) 183, 444, 504, 653, 699, 924
Bsc4I CCNNNNNNNGG 2 cut(s) 388, 490
Bse3DI GCAATG 1 cut(s) 1175
Bse8I GATNNNNATC 1 cut(s) 888
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 6 cut(s) 183, 444, 504, 653, 699, 924
BseGI GGATG 2 cut(s) 973, 1036
BseJI GATNNNNATC 1 cut(s) 888
BseLI CCNNNNNNNGG 2 cut(s) 388, 490
BseMI GCAATG 1 cut(s) 1175
BseMII CTCAG 1 cut(s) 982
BseRI GAGGAG 3 cut(s) 172, 1100, 1352
BseXI GCAGC 2 cut(s) 436, 1301
BseYI CCCAGC 1 cut(s) 758
Bsh1236I CGCG 1 cut(s) 547
BshFI GGCC 3 cut(s) 503, 658, 704
BsiHKAI GWGCWC 3 cut(s) 343, 421, 874
BsiHKCI CYCGRG 3 cut(s) 269, 505, 1126
BslFI GGGAC 1 cut(s) 288
BslI CCNNNNNNNGG 2 cut(s) 388, 490
BsmAI GTCTC 4 cut(s) 230, 785, 1082, 1129
BsmBI CGTCTC 1 cut(s) 1082
BsmFI GGGAC 1 cut(s) 288
BsnI GGCC 3 cut(s) 503, 658, 704
Bso31I GGTCTC 2 cut(s) 230, 785
BsoBI CYCGRG 3 cut(s) 269, 505, 1126
Bsp1286I GDGCHC 3 cut(s) 343, 421, 874
Bsp143I GATC 3 cut(s) 163, 883, 889
Bsp19I CCATGG 1 cut(s) 444
BspACI CCGC 4 cut(s) 114, 290, 500, 1212
BspANI GGCC 3 cut(s) 503, 658, 704
BspCNI CTCAG 1 cut(s) 981
BspFNI CGCG 1 cut(s) 547
BspLI GGNNCC 1 cut(s) 25
BspMI ACCTGC 2 cut(s) 295, 448
BspQI GCTCTTC 1 cut(s) 556
BspTNI GGTCTC 2 cut(s) 230, 785
BsrDI GCAATG 1 cut(s) 1175
BssECI CCNNGG 6 cut(s) 183, 444, 504, 653, 699, 924
BssMI GATC 3 cut(s) 163, 883, 889
BssT1I CCWWGG 3 cut(s) 444, 653, 924
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 3 cut(s) 865, 958, 1332
Bst6I CTCTTC 3 cut(s) 541, 556, 1059
BstAPI GCANNNNNTGC 1 cut(s) 1207
BstC8I GCNNGC 2 cut(s) 545, 1212
BstDEI CTNAG 1 cut(s) 968
BstDSI CCRYGG 1 cut(s) 444
BstF5I GGATG 2 cut(s) 973, 1036
BstFNI CGCG 1 cut(s) 547
BstHHI GCGC 1 cut(s) 549
BstKTI GATC 3 cut(s) 166, 886, 892
BstMAI GTCTC 4 cut(s) 230, 785, 1082, 1129
BstMBI GATC 3 cut(s) 163, 883, 889
BstMWI GCNNNNNNNGC 6 cut(s) 11, 449, 500, 905, 959, 1207
BstNI CCWGG 1 cut(s) 215
BstPAI GACNNNNGTC 1 cut(s) 1094
BstSCI CCNGG 1 cut(s) 213
BstSFI CTRYAG 1 cut(s) 957
BstUI CGCG 1 cut(s) 547
BstV1I GCAGC 2 cut(s) 436, 1301
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 883
BstXI CCANNNNNNTGG 1 cut(s) 931
BstYI RGATCY 1 cut(s) 883
BsuRI GGCC 3 cut(s) 503, 658, 704
BtgI CCRYGG 1 cut(s) 444
BtgZI GCGATG 2 cut(s) 226, 1245
BtsCI GGATG 2 cut(s) 973, 1036
BtsIMutI CAGTG 1 cut(s) 1328
BveI ACCTGC 2 cut(s) 295, 448
Cac8I GCNNGC 2 cut(s) 545, 1212
CfoI GCGC 1 cut(s) 549
CseI GACGC 1 cut(s) 1099
Csp6I GTAC 2 cut(s) 428, 861
CviAII CATG 3 cut(s) 445, 694, 1024
CviQI GTAC 2 cut(s) 428, 861
DdeI CTNAG 1 cut(s) 968
DpnI GATC 3 cut(s) 165, 885, 891
DpnII GATC 3 cut(s) 163, 883, 889
DriI GACNNNNNGTC 1 cut(s) 1330
Eam1104I CTCTTC 3 cut(s) 541, 556, 1059
Eam1105I GACNNNNNGTC 1 cut(s) 1330
EarI CTCTTC 3 cut(s) 541, 556, 1059
Eco130I CCWWGG 3 cut(s) 444, 653, 924
Eco147I AGGCCT 1 cut(s) 658
Eco31I GGTCTC 2 cut(s) 230, 785
Eco57I CTGAAG 1 cut(s) 827
Eco88I CYCGRG 3 cut(s) 269, 505, 1126
EcoRII CCWGG 1 cut(s) 213
EcoT14I CCWWGG 3 cut(s) 444, 653, 924
ErhI CCWWGG 3 cut(s) 444, 653, 924
Esp3I CGTCTC 1 cut(s) 1082
FaeI CATG 3 cut(s) 448, 697, 1027
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FaqI GGGAC 1 cut(s) 288
FatI CATG 3 cut(s) 444, 693, 1023
FauI CCCGC 1 cut(s) 1219
Fnu4HI GCNGC 4 cut(s) 291, 450, 501, 1290
FokI GGATG 2 cut(s) 960, 1043
Fsp4HI GCNGC 4 cut(s) 291, 450, 501, 1290
FspBI CTAG 1 cut(s) 654
GlaI GCGC 1 cut(s) 548
GluI GCNGC 4 cut(s) 291, 450, 501, 1290
GsaI CCCAGC 1 cut(s) 762
HaeIII GGCC 3 cut(s) 503, 658, 704
HgaI GACGC 1 cut(s) 1099
HhaI GCGC 1 cut(s) 549
Hin1II CATG 3 cut(s) 448, 697, 1027
Hin6I GCGC 1 cut(s) 547
HinP1I GCGC 1 cut(s) 547
HincII GTYRAC 2 cut(s) 474, 1099
HindII GTYRAC 2 cut(s) 474, 1099
HindIII AAGCTT 1 cut(s) 839
HinfI GANTC 3 cut(s) 351, 808, 1306
HphI GGTGA 3 cut(s) 473, 603, 1183
Hpy166II GTNNAC 3 cut(s) 474, 1099, 1105
Hpy188III TCNNGA 8 cut(s) 269, 319, 433, 718, 887, 977, 1126, 1128
Hpy8I GTNNAC 3 cut(s) 474, 1099, 1105
Hpy99I CGWCG 2 cut(s) 559, 562
HpyAV CCTTC 8 cut(s) 76, 130, 541, 624, 669, 1110, 1187, 1234
HpyCH4III ACNGT 3 cut(s) 865, 958, 1332
HpyCH4IV ACGT 3 cut(s) 476, 831, 1101
HpyCH4V TGCA 4 cut(s) 280, 765, 1034, 1187
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 449, 500, 905, 959, 1207
HpyF3I CTNAG 1 cut(s) 968
HpySE526I ACGT 3 cut(s) 476, 831, 1101
Hsp92II CATG 3 cut(s) 448, 697, 1027
HspAI GCGC 1 cut(s) 547
Kzo9I GATC 3 cut(s) 163, 883, 889
LguI GCTCTTC 1 cut(s) 556
LmnI GCTCC 5 cut(s) 23, 59, 185, 533, 823
Lsp1109I GCAGC 2 cut(s) 436, 1301
LweI GCATC 4 cut(s) 227, 301, 774, 1021
MaeI CTAG 1 cut(s) 654
MaeII ACGT 3 cut(s) 476, 831, 1101
MaeIII GTNAC 4 cut(s) 567, 784, 1006, 1171
MalI GATC 3 cut(s) 165, 885, 891
MboI GATC 3 cut(s) 163, 883, 889
MfeI CAATTG 1 cut(s) 1188
MflI RGATCY 1 cut(s) 883
MhlI GDGCHC 3 cut(s) 343, 421, 874
MluCI AATT 2 cut(s) 1076, 1188
MlyI GAGTC 1 cut(s) 1300
MmeI TCCRAC 2 cut(s) 845, 1314
MroXI GAANNNNTTC 2 cut(s) 197, 1043
MseI TTAA 3 cut(s) 332, 461, 837
MspR9I CCNGG 1 cut(s) 215
MunI CAATTG 1 cut(s) 1188
MvaI CCWGG 1 cut(s) 215
MvnI CGCG 1 cut(s) 547
MwoI GCNNNNNNNGC 6 cut(s) 11, 449, 500, 905, 959, 1207
NcoI CCATGG 1 cut(s) 444
NdeII GATC 3 cut(s) 163, 883, 889
NlaIII CATG 3 cut(s) 448, 697, 1027
NlaIV GGNNCC 1 cut(s) 25
NmuCI GTSAC 2 cut(s) 567, 1171
PaeR7I CTCGAG 2 cut(s) 269, 1126
PaqCI CACCTGC 2 cut(s) 295, 448
PceI AGGCCT 1 cut(s) 658
PciSI GCTCTTC 1 cut(s) 556
PcsI WCGNNNNNNNCGW 5 cut(s) 551, 563, 572, 629, 677
PdmI GAANNNNTTC 2 cut(s) 197, 1043
PfeI GAWTC 2 cut(s) 351, 808
PkrI GCNGC 4 cut(s) 292, 451, 502, 1291
PleI GAGTC 1 cut(s) 1300
PpsI GAGTC 1 cut(s) 1300
PshAI GACNNNNGTC 1 cut(s) 1094
Psp1406I AACGTT 1 cut(s) 831
Psp6I CCWGG 1 cut(s) 213
PspFI CCCAGC 1 cut(s) 758
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 25
PsuI RGATCY 1 cut(s) 883
RsaI GTAC 2 cut(s) 429, 862
RsaNI GTAC 2 cut(s) 428, 861
SapI GCTCTTC 1 cut(s) 556
SaqAI TTAA 3 cut(s) 332, 461, 837
SatI GCNGC 4 cut(s) 291, 450, 501, 1290
Sau3AI GATC 3 cut(s) 163, 883, 889
SchI GAGTC 1 cut(s) 1300
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 3 cut(s) 343, 421, 874
SfaNI GCATC 4 cut(s) 227, 301, 774, 1021
SfcI CTRYAG 1 cut(s) 957
Sfr274I CTCGAG 2 cut(s) 269, 1126
SlaI CTCGAG 2 cut(s) 269, 1126
SmlI CTYRAG 8 cut(s) 233, 269, 344, 386, 422, 431, 991, 1126
SmoI CTYRAG 8 cut(s) 233, 269, 344, 386, 422, 431, 991, 1126
Sse9I AATT 2 cut(s) 1076, 1188
SseBI AGGCCT 1 cut(s) 658
SsiI CCGC 4 cut(s) 114, 290, 500, 1212
SspI AATATT 1 cut(s) 255
SspMI CTAG 1 cut(s) 654
StuI AGGCCT 1 cut(s) 658
StyD4I CCNGG 1 cut(s) 213
StyI CCWWGG 3 cut(s) 444, 653, 924
TaaI ACNGT 3 cut(s) 865, 958, 1332
TaiI ACGT 3 cut(s) 479, 834, 1104
TaqI TCGA 4 cut(s) 260, 270, 671, 1127
TasI AATT 2 cut(s) 1076, 1188
TauI GCSGC 2 cut(s) 293, 503
TfiI GAWTC 2 cut(s) 351, 808
Tru1I TTAA 3 cut(s) 332, 461, 837
Tru9I TTAA 3 cut(s) 332, 461, 837
TscAI CASTG 1 cut(s) 1335
TseFI GTSAC 2 cut(s) 567, 1171
TseI GCWGC 2 cut(s) 449, 1289
Tsp45I GTSAC 2 cut(s) 567, 1171
TspDTI ATGAA 9 cut(s) 134, 264, 417, 582, 630, 651, 761, 990, 1292
TspGWI ACGGA 1 cut(s) 803
TspRI CASTG 1 cut(s) 1335
XapI RAATTY 1 cut(s) 1076
XhoI CTCGAG 2 cut(s) 269, 1126
XmaJI CCTAGG 1 cut(s) 653
XmnI GAANNNNTTC 2 cut(s) 197, 1043
XspI CTAG 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.