Rroxscaffold_4G00296230

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000368
Physical Location & Seq
Forward (+)
16308826 .. 16312434
3609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00296230.1

Sequence Viewer

Length: 210 bp
ATGATGGCTTTGCTTCGAAATCTTGATCATTGCCTCTCAAGCTATTCATCTGTTATAAGAAAATCCGAGATAGAGGATGCAGAGGAATGCTTCAAACTATTTTCTTTGGAAGAGGCGGCTAAATTTGACGAAGTGACCCTTGCCAATGTGAACAACTTCAAAAGCGCTCAAAAAGCCAGTCACCTAATGCAATCCACAAAGAATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

69

Amino Acids

7.83

Weight (kDa)

5.57

Isoelectric Point (pI)

59.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 2 - 62 1.1e-08 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 56
AciI CCGC 1 cut(s) 116
AcsI RAATTY 1 cut(s) 122
AfeI AGCGCT 1 cut(s) 166
AgsI TTSAA 2 cut(s) 94, 160
AluBI AGCT 1 cut(s) 42
AluI AGCT 1 cut(s) 42
Aor51HI AGCGCT 1 cut(s) 166
ApoI RAATTY 1 cut(s) 122
ArsI GACNNNNNNTTYG 2 cut(s) 163, 195
Asp700I GAANNNNTTC 1 cut(s) 155
AspLEI GCGC 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 173
AsuII TTCGAA 1 cut(s) 16
BclI TGATCA 1 cut(s) 25
BfoI RGCGCY 1 cut(s) 168
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
BmsI GCATC 1 cut(s) 67
Bpu14I TTCGAA 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 177
Bse3DI GCAATG 1 cut(s) 28
BseGI GGATG 1 cut(s) 82
BseMI GCAATG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 177
BsmI GAATGC 1 cut(s) 92
Bsp119I TTCGAA 1 cut(s) 16
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 1 cut(s) 116
BspT104I TTCGAA 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 28
BsrI ACTGG 1 cut(s) 177
BssMI GATC 1 cut(s) 25
Bst6I CTCTTC 1 cut(s) 105
BstBI TTCGAA 1 cut(s) 16
BstF5I GGATG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 2 cut(s) 39, 173
BtsCI GGATG 1 cut(s) 82
CfoI GCGC 1 cut(s) 167
CviJI RGCY 4 cut(s) 8, 42, 119, 176
CviKI_1 RGCY 4 cut(s) 8, 42, 119, 176
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco47III AGCGCT 1 cut(s) 166
FaiI YATR 3 cut(s) 56, 206, 208
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 117
GlaI GCGC 1 cut(s) 166
GluI GCNGC 1 cut(s) 117
HaeII RGCGCY 1 cut(s) 168
HhaI GCGC 1 cut(s) 167
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 1 cut(s) 23
Hpy8I GTNNAC 1 cut(s) 151
HpyCH4V TGCA 2 cut(s) 80, 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 173
HspAI GCGC 1 cut(s) 165
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 1 cut(s) 190
LweI GCATC 1 cut(s) 67
MaeIII GTNAC 2 cut(s) 133, 179
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 1 cut(s) 122
MluCI AATT 1 cut(s) 122
MnlI CCTC 4 cut(s) 44, 67, 76, 106
MroXI GAANNNNTTC 1 cut(s) 155
Mva1269I GAATGC 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 39, 173
NdeII GATC 1 cut(s) 25
NmuCI GTSAC 2 cut(s) 133, 179
NspV TTCGAA 1 cut(s) 16
PctI GAATGC 1 cut(s) 92
PdmI GAANNNNTTC 1 cut(s) 155
PkrI GCNGC 1 cut(s) 118
PsiI TTATAA 1 cut(s) 56
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 25
SetI ASST 2 cut(s) 44, 186
SfaNI GCATC 1 cut(s) 67
SfuI TTCGAA 1 cut(s) 16
SgeI CNNG 5 cut(s) 35, 51, 79, 152, 189
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 1 cut(s) 122
SsiI CCGC 1 cut(s) 116
TaqI TCGA 1 cut(s) 16
TasI AATT 1 cut(s) 122
TauI GCSGC 1 cut(s) 119
TseFI GTSAC 2 cut(s) 133, 179
Tsp45I GTSAC 2 cut(s) 133, 179
TspDTI ATGAA 1 cut(s) 36
XapI RAATTY 1 cut(s) 122
XmnI GAANNNNTTC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.