Rroxscaffold_164G00436060

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000164
OG0000368
Physical Location & Seq
Reverse (-)
51165 .. 55008
3844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_164G00436060.1

Sequence Viewer

Length: 1167 bp
ATGGCAATAACTGCTTCTTTGCTCCAACCCAATCCCCTGAAATGGAACCAAACCCACCACCACCCTCACCCTCTTCTCTTCTCCCCTTCCCGCCCTAATATACTCAAACTCAACACCCCACAATCCTTCAAGCTCAAATGCTCCTTCTCCGAATCCAAACCACAGCTCGTGGCAGTGAAACCGAACCCAATAGAGGTTTTGGCAGATAAGCTCTTGAAGGCTCTGAAAGCGCTGAGGAAGCCCGCAATGGCGGCGGTGCTGTTGGGCCTGGTGTTGATGTCCGACCCGAACTCCGCTTTAGCCGCCTCGGGCGGTCGGGTCGGGGGTCAGGCCTTCTCGTCGCGCTCGGGTTCTTCGTCGTCGTCGTCGTCGAGGAGTTACTCGGTGCCGAGGACGTCGAGGCCGGATTACTCGTACTCTGCGCCGTACTACGCGCCGTCGCCGTTCGGGTTTAGTGGCGGTGGAGGCGGGTTTTATATGGGCCCGGCCGTCGGGGTCGGAGTCGGAGCCGGGTCGAGTTTTCTTCTGATTTTGACGGGTTTTGCGGCGTTTGTTTTGGTTTCGGGTTTTCTTTCGGATCGGTCTGAGGGGAGTGTGCTTACTGCTACTGAGAAAACTACTGTTTTGAAGTTGCAGGTTGGGTTGTTAGGATTGGGGCGAACACTACAAAGGGATCTTGATCGGATTGCTGATACTGCAGATACTTCCACCCCCGAGGGATTGAGCTATGTTCTGACGGAAACAACACTAGCATTGCTTAGGCATCCTGATTATTGCATCTCGGGTTATTCATCGGTGTCTCTGAAGCGAAGCATAGAGGATGCAGAGAAAGGCTTCAATCAACTTTCTATTGAAGAAAGGGGTAAATTTGATGAAGAGACACTCGTCAATGTGAACAGCATAAGAAGGCGGAGCTCAACAAGCCAGAGATCTAATGGATTCCGCAATGAATACATAGTGATAACAATATTGGTGGCTGCTGAAGGAGTGCATAAGTTACCCGCCATCAATGGTAGCAGCGACTTGAGGGAAGCATTGCAGAAGCTTGCATCCATTCCCTCGAACAAAATATTAGCAGTAGAGGTGTTGTGGACTCCTCAGAATGAAAATGACACTCTGTCGGAGCGTGAGCTACTTGAAGATTACCCGCTTCTGAGGCCTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

388

Amino Acids

41.77

Weight (kDa)

9.18

Isoelectric Point (pI)

56.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 206 - 388 4.8e-70 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 398
Acc36I ACCTGC 1 cut(s) 625
AccB1I GGYRCC 1 cut(s) 385
AccII CGCG 2 cut(s) 343, 434
AclWI GGATC 2 cut(s) 585, 681
AcoI YGGCCR 1 cut(s) 486
AcsI RAATTY 1 cut(s) 866
AcuI CTGAAG 2 cut(s) 824, 1002
AcyI GRCGYC 1 cut(s) 395
AfaI GTAC 2 cut(s) 416, 428
AfeI AGCGCT 1 cut(s) 231
AfiI CCNNNNNNNGG 3 cut(s) 42, 193, 491
AgsI TTSAA 6 cut(s) 130, 217, 628, 838, 854, 1139
AhdI GACNNNNNGTC 1 cut(s) 1117
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 7 cut(s) 133, 166, 211, 726, 915, 1045, 1132
AluI AGCT 7 cut(s) 133, 166, 211, 726, 915, 1045, 1132
Alw21I GWGCWC 1 cut(s) 917
Alw26I GTCTC 2 cut(s) 804, 872
AlwI GGATC 2 cut(s) 585, 681
Ama87I CYCGRG 4 cut(s) 307, 346, 713, 781
Aor51HI AGCGCT 1 cut(s) 231
AoxI GGCC 6 cut(s) 265, 330, 401, 481, 486, 1157
ApaI GGGCCC 1 cut(s) 485
ApeKI GCWGC 2 cut(s) 977, 1017
ApoI RAATTY 1 cut(s) 866
Asp700I GAANNNNTTC 1 cut(s) 833
AspLEI GCGC 4 cut(s) 232, 345, 424, 436
AspS9I GGNCC 3 cut(s) 265, 481, 482
AsuC2I CCSGG 2 cut(s) 485, 511
AsuHPI GGTGA 1 cut(s) 59
AvaI CYCGRG 4 cut(s) 307, 346, 713, 781
BaeGI GKGCMC 1 cut(s) 485
BanI GGYRCC 1 cut(s) 385
BanII GRGCYC 2 cut(s) 485, 917
BauI CACGAG 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 917
BbvCI CCTCAGC 1 cut(s) 233
BbvI GCAGC 2 cut(s) 964, 1029
BccI CCATC 1 cut(s) 1013
BceAI ACGGC 4 cut(s) 409, 421, 427, 473
BciT130I CCWGG 1 cut(s) 269
BcnI CCSGG 2 cut(s) 485, 511
BcoDI GTCTC 2 cut(s) 804, 872
BfaI CTAG 1 cut(s) 749
BfmI CTRYAG 1 cut(s) 696
BfoI RGCGCY 1 cut(s) 233
BfuAI ACCTGC 1 cut(s) 625
BglII AGATCT 1 cut(s) 929
BisI GCNGC 5 cut(s) 252, 303, 546, 978, 1018
BlsI GCNGC 5 cut(s) 253, 304, 547, 979, 1019
Bme1390I CCNGG 3 cut(s) 269, 485, 511
BmeRI GACNNNNNGTC 1 cut(s) 1117
BmeT110I CYCGRG 4 cut(s) 307, 346, 713, 781
BmgT120I GGNCC 3 cut(s) 265, 481, 482
BmiI GGNNCC 4 cut(s) 47, 387, 483, 508
BmrFI CCNGG 3 cut(s) 269, 485, 511
BmsI GCATC 4 cut(s) 772, 786, 811, 1058
BoxI GACNNNNGTC 1 cut(s) 884
Bpu10I CCTNAGC 2 cut(s) 233, 758
BpuEI CTTGAG 1 cut(s) 1045
BpuMI CCSGG 2 cut(s) 485, 511
BsaBI GATNNNNATC 1 cut(s) 678
BsaHI GRCGYC 1 cut(s) 395
BsaJI CCNNGG 3 cut(s) 306, 389, 714
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 193, 491
Bse3DI GCAATG 4 cut(s) 252, 752, 952, 1034
Bse8I GATNNNNATC 1 cut(s) 678
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 3 cut(s) 306, 389, 714
BseGI GGATG 3 cut(s) 763, 826, 1049
BseJI GATNNNNATC 1 cut(s) 678
BseLI CCNNNNNNNGG 3 cut(s) 42, 193, 491
BseMI GCAATG 4 cut(s) 252, 752, 952, 1034
BseMII CTCAG 5 cut(s) 224, 576, 600, 1112, 1145
BseRI GAGGAG 2 cut(s) 388, 1086
BseSI GKGCMC 1 cut(s) 485
BseX3I CGGCCG 1 cut(s) 486
BseXI GCAGC 2 cut(s) 964, 1029
Bsh1236I CGCG 2 cut(s) 343, 434
Bsh1285I CGRYCG 2 cut(s) 316, 489
BshFI GGCC 6 cut(s) 267, 332, 403, 483, 488, 1159
BshNI GGYRCC 1 cut(s) 385
BsiEI CGRYCG 2 cut(s) 316, 489
BsiHKAI GWGCWC 1 cut(s) 917
BsiHKCI CYCGRG 4 cut(s) 307, 346, 713, 781
BsiSI CCGG 3 cut(s) 404, 485, 510
BslI CCNNNNNNNGG 3 cut(s) 42, 193, 491
BsmAI GTCTC 2 cut(s) 804, 872
BsnI GGCC 6 cut(s) 267, 332, 403, 483, 488, 1159
BsoBI CYCGRG 4 cut(s) 307, 346, 713, 781
Bsp120I GGGCCC 1 cut(s) 481
Bsp1286I GDGCHC 2 cut(s) 485, 917
Bsp143I GATC 4 cut(s) 577, 673, 679, 929
BspANI GGCC 6 cut(s) 267, 332, 403, 483, 488, 1159
BspCNI CTCAG 5 cut(s) 225, 577, 601, 1111, 1146
BspFNI CGCG 2 cut(s) 343, 434
BspLI GGNNCC 4 cut(s) 47, 387, 483, 508
BspMAI CTGCAG 1 cut(s) 700
BspMI ACCTGC 1 cut(s) 625
BspPI GGATC 2 cut(s) 585, 681
BspT107I GGYRCC 1 cut(s) 385
BsrDI GCAATG 4 cut(s) 252, 752, 952, 1034
BssECI CCNNGG 3 cut(s) 306, 389, 714
BssMI GATC 4 cut(s) 577, 673, 679, 929
BssNI GRCGYC 1 cut(s) 395
BssSI CACGAG 1 cut(s) 167
Bst2BI CACGAG 1 cut(s) 167
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 1 cut(s) 622
Bst6I CTCTTC 3 cut(s) 78, 83, 870
BstACI GRCGYC 1 cut(s) 395
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 243, 1047
BstDEI CTNAG 6 cut(s) 233, 585, 609, 758, 1098, 1154
BstF5I GGATG 3 cut(s) 763, 826, 1049
BstFNI CGCG 2 cut(s) 343, 434
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 4 cut(s) 232, 345, 424, 436
BstKTI GATC 4 cut(s) 580, 676, 682, 932
BstMAI GTCTC 2 cut(s) 804, 872
BstMBI GATC 4 cut(s) 577, 673, 679, 929
BstMCI CGRYCG 2 cut(s) 316, 489
BstMWI GCNNNNNNNGC 9 cut(s) 11, 227, 238, 251, 302, 465, 695, 921, 1156
BstNI CCWGG 1 cut(s) 269
BstPAI GACNNNNGTC 1 cut(s) 884
BstSCI CCNGG 3 cut(s) 267, 483, 509
BstSFI CTRYAG 1 cut(s) 696
BstSLI GKGCMC 1 cut(s) 485
BstUI CGCG 2 cut(s) 343, 434
BstV1I GCAGC 2 cut(s) 964, 1029
BstX2I RGATCY 2 cut(s) 673, 929
BstYI RGATCY 2 cut(s) 673, 929
BstZI CGGCCG 1 cut(s) 486
BsuRI GGCC 6 cut(s) 267, 332, 403, 483, 488, 1159
BtsCI GGATG 3 cut(s) 763, 826, 1049
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 180
BveI ACCTGC 1 cut(s) 625
Cac8I GCNNGC 2 cut(s) 243, 1047
CfoI GCGC 4 cut(s) 232, 345, 424, 436
Cfr13I GGNCC 3 cut(s) 265, 481, 482
Csp6I GTAC 2 cut(s) 415, 427
CspCI CAANNNNNGTGG 2 cut(s) 954, 989
CviQI GTAC 2 cut(s) 415, 427
DdeI CTNAG 6 cut(s) 233, 585, 609, 758, 1098, 1154
DpnI GATC 4 cut(s) 579, 675, 681, 931
DpnII GATC 4 cut(s) 577, 673, 679, 929
DriI GACNNNNNGTC 1 cut(s) 1117
EaeI YGGCCR 1 cut(s) 486
EagI CGGCCG 1 cut(s) 486
Eam1104I CTCTTC 3 cut(s) 78, 83, 870
Eam1105I GACNNNNNGTC 1 cut(s) 1117
EarI CTCTTC 3 cut(s) 78, 83, 870
EciI GGCGGA 1 cut(s) 925
Ecl136II GAGCTC 1 cut(s) 915
EclXI CGGCCG 1 cut(s) 486
Eco147I AGGCCT 2 cut(s) 332, 1159
Eco24I GRGCYC 2 cut(s) 485, 917
Eco47III AGCGCT 1 cut(s) 231
Eco52I CGGCCG 1 cut(s) 486
Eco53kI GAGCTC 1 cut(s) 915
Eco57I CTGAAG 2 cut(s) 824, 1002
Eco88I CYCGRG 4 cut(s) 307, 346, 713, 781
EcoICRI GAGCTC 1 cut(s) 915
EcoRII CCWGG 1 cut(s) 267
EcoT38I GRGCYC 2 cut(s) 485, 917
FaiI YATR 8 cut(s) 101, 477, 479, 729, 815, 902, 956, 993
FauI CCCGC 5 cut(s) 98, 250, 461, 1009, 1155
Fnu4HI GCNGC 5 cut(s) 252, 303, 546, 978, 1018
FokI GGATG 3 cut(s) 750, 833, 1036
FriOI GRGCYC 2 cut(s) 485, 917
Fsp4HI GCNGC 5 cut(s) 252, 303, 546, 978, 1018
FspBI CTAG 1 cut(s) 749
GlaI GCGC 4 cut(s) 231, 344, 423, 435
GluI GCNGC 5 cut(s) 252, 303, 546, 978, 1018
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 6 cut(s) 267, 332, 403, 483, 488, 1159
HapII CCGG 3 cut(s) 404, 485, 510
HhaI GCGC 4 cut(s) 232, 345, 424, 436
Hin1I GRCGYC 1 cut(s) 395
Hin6I GCGC 4 cut(s) 230, 343, 422, 434
HinP1I GCGC 4 cut(s) 230, 343, 422, 434
HindIII AAGCTT 1 cut(s) 1043
HinfI GANTC 4 cut(s) 152, 501, 939, 1093
HpaII CCGG 3 cut(s) 404, 485, 510
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 2 cut(s) 895, 1092
Hpy188III TCNNGA 3 cut(s) 214, 677, 767
Hpy8I GTNNAC 2 cut(s) 895, 1092
Hpy99I CGWCG 9 cut(s) 343, 361, 364, 367, 370, 373, 400, 442, 494
HpyAV CCTTC 7 cut(s) 96, 136, 154, 211, 343, 900, 977
HpyCH4III ACNGT 1 cut(s) 622
HpyCH4IV ACGT 1 cut(s) 395
HpyCH4V TGCA 7 cut(s) 634, 698, 777, 824, 991, 1039, 1049
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 227, 238, 251, 302, 465, 695, 921, 1156
HpyF3I CTNAG 6 cut(s) 233, 585, 609, 758, 1098, 1154
HpySE526I ACGT 1 cut(s) 395
Hsp92I GRCGYC 1 cut(s) 395
HspAI GCGC 4 cut(s) 230, 343, 422, 434
Kzo9I GATC 4 cut(s) 577, 673, 679, 929
LmnI GCTCC 5 cut(s) 27, 146, 506, 912, 1123
Lsp1109I GCAGC 2 cut(s) 964, 1029
LweI GCATC 4 cut(s) 772, 786, 811, 1058
MaeI CTAG 1 cut(s) 749
MaeII ACGT 1 cut(s) 395
MaeIII GTNAC 2 cut(s) 377, 996
MalI GATC 4 cut(s) 579, 675, 681, 931
MboI GATC 4 cut(s) 577, 673, 679, 929
MboII GAAGA 7 cut(s) 65, 70, 345, 515, 866, 887, 1151
MflI RGATCY 2 cut(s) 673, 929
MhlI GDGCHC 2 cut(s) 485, 917
MluCI AATT 1 cut(s) 866
MlyI GAGTC 2 cut(s) 510, 1087
MmeI TCCRAC 5 cut(s) 49, 306, 478, 484, 1101
MroXI GAANNNNTTC 1 cut(s) 833
MspI CCGG 3 cut(s) 404, 485, 510
MspR9I CCNGG 3 cut(s) 269, 485, 511
MvaI CCWGG 1 cut(s) 269
MvnI CGCG 2 cut(s) 343, 434
MwoI GCNNNNNNNGC 9 cut(s) 11, 227, 238, 251, 302, 465, 695, 921, 1156
NciI CCSGG 2 cut(s) 485, 511
NdeII GATC 4 cut(s) 577, 673, 679, 929
NlaIV GGNNCC 4 cut(s) 47, 387, 483, 508
NmeAIII GCCGAG 1 cut(s) 414
PceI AGGCCT 2 cut(s) 332, 1159
PcsI WCGNNNNNNNCGW 4 cut(s) 353, 362, 365, 368
PdmI GAANNNNTTC 1 cut(s) 833
PfeI GAWTC 2 cut(s) 152, 939
PkrI GCNGC 5 cut(s) 253, 304, 547, 979, 1019
PleI GAGTC 2 cut(s) 509, 1087
PpsI GAGTC 2 cut(s) 509, 1087
PshAI GACNNNNGTC 1 cut(s) 884
Psp124BI GAGCTC 1 cut(s) 917
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 4 cut(s) 47, 387, 483, 508
PspOMI GGGCCC 1 cut(s) 481
PspPI GGNCC 3 cut(s) 265, 481, 482
PstI CTGCAG 1 cut(s) 700
PsuI RGATCY 2 cut(s) 673, 929
RsaI GTAC 2 cut(s) 416, 428
RsaNI GTAC 2 cut(s) 415, 427
SacI GAGCTC 1 cut(s) 917
SatI GCNGC 5 cut(s) 252, 303, 546, 978, 1018
Sau3AI GATC 4 cut(s) 577, 673, 679, 929
Sau96I GGNCC 3 cut(s) 265, 481, 482
SchI GAGTC 2 cut(s) 510, 1087
ScrFI CCNGG 3 cut(s) 269, 485, 511
SduI GDGCHC 2 cut(s) 485, 917
SfaNI GCATC 4 cut(s) 772, 786, 811, 1058
SfcI CTRYAG 1 cut(s) 696
SmlI CTYRAG 1 cut(s) 1024
SmoI CTYRAG 1 cut(s) 1024
Sse9I AATT 1 cut(s) 866
SseBI AGGCCT 2 cut(s) 332, 1159
SspI AATATT 2 cut(s) 969, 1071
SspMI CTAG 1 cut(s) 749
SstI GAGCTC 1 cut(s) 917
StuI AGGCCT 2 cut(s) 332, 1159
StyD4I CCNGG 3 cut(s) 267, 483, 509
TaaI ACNGT 1 cut(s) 622
TaiI ACGT 1 cut(s) 398
TaqI TCGA 4 cut(s) 371, 398, 515, 1061
TaqII GACCGA 1 cut(s) 570
TasI AATT 1 cut(s) 866
TauI GCSGC 3 cut(s) 254, 305, 548
TfiI GAWTC 2 cut(s) 152, 939
TscAI CASTG 1 cut(s) 180
TseI GCWGC 2 cut(s) 977, 1017
TspDTI ATGAA 4 cut(s) 780, 888, 963, 1119
TspGWI ACGGA 1 cut(s) 752
TspRI CASTG 1 cut(s) 180
XapI RAATTY 1 cut(s) 866
XcmI CCANNNNNNNNNTGG 1 cut(s) 932
XmnI GAANNNNTTC 1 cut(s) 833
XspI CTAG 1 cut(s) 749
ZraI GACGTC 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.