Rmu_sc0001358.1_g000004

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001358.1
OG0000368
Physical Location & Seq
Reverse (-)
13626 .. 15074
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001358.1_g000004.1.cds

Sequence Viewer

Length: 498 bp
atggcagccgtactgttgtgttttttgttgatgtatcatttgaatccaacattggctgcctcaggtggatcggtcggcggagattcttggtcggattccgattccgattcggattcggattcgcatctgtattcctcggattcggattcatggtcgcacccatcatcaagtccttcgaaaacgaattcgcccgaggagcgtaaaggtcaggcagttttttgtttgttgattatgggggcaattgtggtgttggcatttacatgttcatcaagatctactgccactgttgtcaagcttcaggttggtctgttgagcacagcgcgaacactcctaaaggatcttgatcagatagctgaaactgcagatacgtctactcgcaaggatttgagccgtgttttgacagaggcaacagcagctttacttcgccatcctcatcattgtatctcaggctattcttctgtaagttcaaaatcatcccctgaagtagtacttggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

165

Amino Acids

17.41

Weight (kDa)

5.57

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 371
AccII CGCG 1 cut(s) 322
AciI CCGC 1 cut(s) 78
AclWI GGATC 2 cut(s) 76, 345
AcsI RAATTY 1 cut(s) 184
AcuI CTGAAG 1 cut(s) 281
AfaI GTAC 2 cut(s) 12, 489
AflIII ACRYGT 1 cut(s) 260
AgsI TTSAA 2 cut(s) 43, 468
AjuI GAANNNNNNNTTGG 3 cut(s) 35, 67, 474
AluBI AGCT 3 cut(s) 295, 353, 416
AluI AGCT 3 cut(s) 295, 353, 416
Alw21I GWGCWC 1 cut(s) 317
AlwI GGATC 2 cut(s) 76, 345
Ama87I CYCGRG 1 cut(s) 191
ApeKI GCWGC 3 cut(s) 5, 56, 413
ApoI RAATTY 1 cut(s) 184
AspLEI GCGC 1 cut(s) 322
AsuII TTCGAA 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 191
AxyI CCTNAGG 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 317
BbvI GCAGC 3 cut(s) 17, 43, 425
BccI CCATC 2 cut(s) 169, 435
BceAI ACGGC 1 cut(s) 375
BclI TGATCA 1 cut(s) 343
BfmI CTRYAG 1 cut(s) 360
BglII AGATCT 1 cut(s) 272
BisI GCNGC 3 cut(s) 6, 57, 414
BlsI GCNGC 3 cut(s) 7, 58, 415
BmcAI AGTACT 1 cut(s) 489
BmeT110I CYCGRG 1 cut(s) 191
BmsI GCATC 1 cut(s) 133
Bpu14I TTCGAA 1 cut(s) 176
BsaBI GATNNNNATC 2 cut(s) 123, 342
BsaJI CCNNGG 2 cut(s) 135, 192
Bse21I CCTNAGG 1 cut(s) 61
Bse8I GATNNNNATC 2 cut(s) 123, 342
BseDI CCNNGG 2 cut(s) 135, 192
BseGI GGATG 2 cut(s) 427, 473
BseJI GATNNNNATC 2 cut(s) 123, 342
BseMII CTCAG 2 cut(s) 75, 459
BseRI GAGGAG 1 cut(s) 209
BseXI GCAGC 3 cut(s) 17, 43, 425
Bsh1236I CGCG 1 cut(s) 322
Bsh1285I CGRYCG 1 cut(s) 75
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 317
BsiHKCI CYCGRG 1 cut(s) 191
BsoBI CYCGRG 1 cut(s) 191
Bsp119I TTCGAA 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 317
Bsp143I GATC 4 cut(s) 68, 272, 337, 343
BspACI CCGC 1 cut(s) 78
BspCNI CTCAG 2 cut(s) 74, 458
BspFNI CGCG 1 cut(s) 322
BspMAI CTGCAG 1 cut(s) 364
BspPI GGATC 2 cut(s) 76, 345
BspT104I TTCGAA 1 cut(s) 176
BssECI CCNNGG 2 cut(s) 135, 192
BssMI GATC 4 cut(s) 68, 272, 337, 343
Bst4CI ACNGT 2 cut(s) 15, 286
BstBI TTCGAA 1 cut(s) 176
BstDEI CTNAG 2 cut(s) 61, 445
BstF5I GGATG 2 cut(s) 427, 473
BstFNI CGCG 1 cut(s) 322
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 4 cut(s) 71, 275, 340, 346
BstMBI GATC 4 cut(s) 68, 272, 337, 343
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 3 cut(s) 196, 359, 413
BstNSI RCATGY 1 cut(s) 264
BstSFI CTRYAG 1 cut(s) 360
BstUI CGCG 1 cut(s) 322
BstV1I GCAGC 3 cut(s) 17, 43, 425
BstX2I RGATCY 2 cut(s) 272, 337
BstYI RGATCY 2 cut(s) 272, 337
Bsu36I CCTNAGG 1 cut(s) 61
BtsCI GGATG 2 cut(s) 427, 473
BtsIMutI CAGTG 1 cut(s) 282
CfoI GCGC 1 cut(s) 322
Csp6I GTAC 2 cut(s) 11, 488
CviAII CATG 2 cut(s) 150, 261
CviJI RGCY 7 cut(s) 8, 56, 295, 353, 390, 416, 450
CviKI_1 RGCY 7 cut(s) 8, 56, 295, 353, 390, 416, 450
CviQI GTAC 2 cut(s) 11, 488
DdeI CTNAG 2 cut(s) 61, 445
DpnI GATC 4 cut(s) 70, 274, 339, 345
DpnII GATC 4 cut(s) 68, 272, 337, 343
EciI GGCGGA 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 281
Eco81I CCTNAGG 1 cut(s) 61
Eco88I CYCGRG 1 cut(s) 191
EcoRI GAATTC 1 cut(s) 184
FaeI CATG 2 cut(s) 153, 264
FaiI YATR 3 cut(s) 151, 233, 262
FalI AAGNNNNNCTT 1 cut(s) 474
FatI CATG 2 cut(s) 149, 260
FbaI TGATCA 1 cut(s) 343
FblI GTMKAC 1 cut(s) 371
Fnu4HI GCNGC 3 cut(s) 6, 57, 414
FokI GGATG 2 cut(s) 414, 460
Fsp4HI GCNGC 3 cut(s) 6, 57, 414
GlaI GCGC 1 cut(s) 321
GluI GCNGC 3 cut(s) 6, 57, 414
HhaI GCGC 1 cut(s) 322
Hin1II CATG 2 cut(s) 153, 264
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 9 cut(s) 43, 83, 95, 101, 107, 113, 119, 140, 146
Hpy166II GTNNAC 1 cut(s) 372
Hpy188I TCNGA 8 cut(s) 94, 100, 106, 112, 118, 139, 145, 348
Hpy188III TCNNGA 2 cut(s) 270, 341
Hpy8I GTNNAC 1 cut(s) 372
HpyAV CCTTC 1 cut(s) 183
HpyCH4III ACNGT 2 cut(s) 15, 286
HpyCH4IV ACGT 1 cut(s) 368
HpyCH4V TGCA 1 cut(s) 362
HpyF10VI GCNNNNNNNGC 3 cut(s) 196, 359, 413
HpyF3I CTNAG 2 cut(s) 61, 445
HpySE526I ACGT 1 cut(s) 368
Hsp92II CATG 2 cut(s) 153, 264
HspAI GCGC 1 cut(s) 320
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 4 cut(s) 68, 272, 337, 343
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 5 cut(s) 48, 194, 284, 432, 492
Lsp1109I GCAGC 3 cut(s) 17, 43, 425
LweI GCATC 1 cut(s) 133
MaeII ACGT 1 cut(s) 368
MalI GATC 4 cut(s) 70, 274, 339, 345
MboI GATC 4 cut(s) 68, 272, 337, 343
MboII GAAGA 1 cut(s) 447
MfeI CAATTG 1 cut(s) 240
MflI RGATCY 2 cut(s) 272, 337
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 2 cut(s) 184, 240
MmeI TCCRAC 2 cut(s) 71, 72
MnlI CCTC 5 cut(s) 70, 145, 187, 397, 441
MslI CAYNNNNRTG 1 cut(s) 259
MunI CAATTG 1 cut(s) 240
MvnI CGCG 1 cut(s) 322
MwoI GCNNNNNNNGC 3 cut(s) 196, 359, 413
NdeII GATC 4 cut(s) 68, 272, 337, 343
NlaIII CATG 2 cut(s) 153, 264
NspI RCATGY 1 cut(s) 264
NspV TTCGAA 1 cut(s) 176
PciI ACATGT 1 cut(s) 260
PfeI GAWTC 9 cut(s) 43, 83, 95, 101, 107, 113, 119, 140, 146
PkrI GCNGC 3 cut(s) 7, 58, 415
PscI ACATGT 1 cut(s) 260
PstI CTGCAG 1 cut(s) 364
PsuI RGATCY 2 cut(s) 272, 337
RsaI GTAC 2 cut(s) 12, 489
RsaNI GTAC 2 cut(s) 11, 488
RseI CAYNNNNRTG 1 cut(s) 259
SatI GCNGC 3 cut(s) 6, 57, 414
Sau3AI GATC 4 cut(s) 68, 272, 337, 343
ScaI AGTACT 1 cut(s) 489
SduI GDGCHC 1 cut(s) 317
SetI ASST 7 cut(s) 67, 208, 297, 303, 355, 371, 418
SfaNI GCATC 1 cut(s) 133
SfcI CTRYAG 1 cut(s) 360
SfuI TTCGAA 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 259
Sse9I AATT 2 cut(s) 184, 240
SsiI CCGC 1 cut(s) 78
TaaI ACNGT 2 cut(s) 15, 286
TaiI ACGT 1 cut(s) 371
TaqI TCGA 1 cut(s) 176
TaqII GACCGA 1 cut(s) 61
TasI AATT 2 cut(s) 184, 240
TatI WGTACW 1 cut(s) 487
TfiI GAWTC 9 cut(s) 43, 83, 95, 101, 107, 113, 119, 140, 146
TscAI CASTG 1 cut(s) 289
TseI GCWGC 3 cut(s) 5, 56, 413
TspDTI ATGAA 2 cut(s) 138, 255
TspRI CASTG 1 cut(s) 289
XapI RAATTY 1 cut(s) 184
XceI RCATGY 1 cut(s) 264
XmiI GTMKAC 1 cut(s) 371
ZrmI AGTACT 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.