Rmu_sc0001729.1_g000017

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001729.1
OG0000368
Physical Location & Seq
Forward (+)
100231 .. 101752
1522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001729.1_g000017.1.cds

Sequence Viewer

Length: 780 bp
ctgcaggcggactgggcgactggaaataggaggggcacgatcgactgggctgctgcagagggggccacgatctactgggctactgcggaggggggcacgatcgaccgggctgctgctggtggtgcaaatcggaggcggtgctgcagtttcgccggtggtatgggtgcagggaagcagcgcggcgtgcggattacaggtttctggacgcgggggcgttggggaggaggccggccgggctgggctgctgggtttgcaggttcggccggtcacttggtggtctgctggtcactgagttatcaagcctggtatggtcgtcacttttttgtccaactggtggttactcgaaagtccgagatagaagatgcagagcaatgcttcaaacaactttctatggaagaagcagctaaatttgatgaagtgacacttgccaatgtgaacaactttatagtgcgttcaacaagccagtcaccaaatgaaggccacaaagaatatatagcggttacagttttggtggctactcgaggtgcaccaaagttgcccagcattaatggccctggtgacttgaagaaagctttacagagtcttggatccattccctcgaaccaaatactggcggttgaggtcttgtggactcctcaacaggaaaatgatactttgactgagaaggaactacttaaggattacccgcagttgaggggcttttatgatggagggtcacttgaagaagggccatatgacgattcccacccgttcttaggcgttactgtagtcaagagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

259

Amino Acids

28.1

Weight (kDa)

7.08

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 245
AccB7I CCANNNNNTGG 2 cut(s) 334, 610
AccII CGCG 2 cut(s) 180, 208
AciI CCGC 9 cut(s) 8, 86, 136, 180, 187, 208, 497, 614, 686
AclWI GGATC 2 cut(s) 582, 595
AcoI YGGCCR 2 cut(s) 230, 261
AcsI RAATTY 1 cut(s) 407
AdeI CACNNNGTG 1 cut(s) 274
AfiI CCNNNNNNNGG 4 cut(s) 334, 476, 610, 755
AflII CTTAAG 1 cut(s) 674
AgsI TTSAA 4 cut(s) 379, 456, 565, 722
AjnI CCWGG 2 cut(s) 302, 553
AluBI AGCT 3 cut(s) 404, 572, 777
AluI AGCT 3 cut(s) 404, 572, 777
Alw21I GWGCWC 1 cut(s) 529
Alw44I GTGCAC 1 cut(s) 525
AlwI GGATC 2 cut(s) 582, 595
Ama87I CYCGRG 1 cut(s) 519
AoxI GGCC 7 cut(s) 63, 226, 230, 261, 478, 550, 728
ApaLI GTGCAC 1 cut(s) 525
ApeKI GCWGC 8 cut(s) 50, 53, 110, 113, 141, 175, 242, 401
ApoI RAATTY 1 cut(s) 407
AseI ATTAAT 1 cut(s) 546
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 3 cut(s) 63, 551, 728
AsuC2I CCSGG 2 cut(s) 107, 234
AsuHPI GGTGA 2 cut(s) 459, 569
AvaI CYCGRG 1 cut(s) 519
BaeGI GKGCMC 3 cut(s) 38, 98, 529
BamHI GGATCC 1 cut(s) 587
Bbv12I GWGCWC 1 cut(s) 529
BbvI GCAGC 8 cut(s) 37, 40, 97, 100, 128, 187, 229, 413
BccI CCATC 1 cut(s) 701
BcgI CGANNNNNNTGC 4 cut(s) 32, 66, 92, 126
BciT130I CCWGG 2 cut(s) 304, 555
BcnI CCSGG 2 cut(s) 107, 234
BfaI CTAG 1 cut(s) 778
BfmI CTRYAG 4 cut(s) 2, 54, 142, 765
BfrI CTTAAG 1 cut(s) 674
BfuAI ACCTGC 1 cut(s) 245
BglI GCCNNNNNGGC 1 cut(s) 234
BisI GCNGC 9 cut(s) 51, 54, 111, 114, 142, 176, 181, 243, 402
BlsI GCNGC 9 cut(s) 52, 55, 112, 115, 143, 177, 182, 244, 403
Bme1390I CCNGG 4 cut(s) 107, 234, 304, 555
BmeT110I CYCGRG 1 cut(s) 519
BmgT120I GGNCC 3 cut(s) 63, 551, 728
BmiI GGNNCC 2 cut(s) 64, 589
BmrFI CCNGG 4 cut(s) 107, 234, 304, 555
BmrI ACTGGG 3 cut(s) 22, 55, 85
BmsI GCATC 1 cut(s) 352
BmuI ACTGGG 3 cut(s) 22, 55, 85
BpuMI CCSGG 2 cut(s) 107, 234
BsaJI CCNNGG 1 cut(s) 553
Bsc4I CCNNNNNNNGG 4 cut(s) 334, 476, 610, 755
Bse118I RCCGGY 3 cut(s) 152, 228, 263
Bse1I ACTGG 7 cut(s) 17, 25, 50, 80, 336, 463, 615
Bse3DI GCAATG 1 cut(s) 377
BseBI CCWGG 2 cut(s) 304, 555
BseDI CCNNGG 1 cut(s) 553
BseLI CCNNNNNNNGG 4 cut(s) 334, 476, 610, 755
BseMI GCAATG 1 cut(s) 377
BseMII CTCAG 2 cut(s) 281, 651
BseNI ACTGG 7 cut(s) 17, 25, 50, 80, 336, 463, 615
BseRI GAGGAG 2 cut(s) 237, 624
BseSI GKGCMC 3 cut(s) 38, 98, 529
BseX3I CGGCCG 2 cut(s) 230, 261
BseXI GCAGC 8 cut(s) 37, 40, 97, 100, 128, 187, 229, 413
BseYI CCCAGC 3 cut(s) 237, 245, 539
BsgI GTGCAG 1 cut(s) 186
Bsh1236I CGCG 2 cut(s) 180, 208
Bsh1285I CGRYCG 5 cut(s) 42, 102, 106, 233, 264
BshFI GGCC 7 cut(s) 65, 228, 232, 263, 480, 552, 730
BsiEI CGRYCG 5 cut(s) 42, 102, 106, 233, 264
BsiHKAI GWGCWC 1 cut(s) 529
BsiHKCI CYCGRG 1 cut(s) 519
BsiSI CCGG 5 cut(s) 106, 153, 229, 233, 264
BslI CCNNNNNNNGG 4 cut(s) 334, 476, 610, 755
BsnI GGCC 7 cut(s) 65, 228, 232, 263, 480, 552, 730
BsoBI CYCGRG 1 cut(s) 519
Bsp1286I GDGCHC 3 cut(s) 38, 98, 529
Bsp143I GATC 4 cut(s) 39, 69, 99, 587
BspACI CCGC 9 cut(s) 8, 86, 136, 180, 187, 208, 497, 614, 686
BspANI GGCC 7 cut(s) 65, 228, 232, 263, 480, 552, 730
BspCNI CTCAG 2 cut(s) 282, 652
BspFNI CGCG 2 cut(s) 180, 208
BspLI GGNNCC 2 cut(s) 64, 589
BspMAI CTGCAG 3 cut(s) 6, 58, 146
BspMI ACCTGC 1 cut(s) 245
BspPI GGATC 2 cut(s) 582, 595
BspTI CTTAAG 1 cut(s) 674
BsrDI GCAATG 1 cut(s) 377
BsrFI RCCGGY 3 cut(s) 152, 228, 263
BsrI ACTGG 7 cut(s) 17, 25, 50, 80, 336, 463, 615
BssAI RCCGGY 3 cut(s) 152, 228, 263
BssECI CCNNGG 1 cut(s) 553
BssMI GATC 4 cut(s) 39, 69, 99, 587
Bst2UI CCWGG 2 cut(s) 304, 555
Bst4CI ACNGT 2 cut(s) 505, 766
BstAFI CTTAAG 1 cut(s) 674
BstC8I GCNNGC 3 cut(s) 6, 185, 230
BstDEI CTNAG 3 cut(s) 290, 660, 754
BstFNI CGCG 2 cut(s) 180, 208
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 4 cut(s) 42, 72, 102, 590
BstMBI GATC 4 cut(s) 39, 69, 99, 587
BstMCI CGRYCG 5 cut(s) 42, 102, 106, 233, 264
BstMWI GCNNNNNNNGC 8 cut(s) 14, 62, 122, 184, 234, 251, 260, 549
BstNI CCWGG 2 cut(s) 304, 555
BstSCI CCNGG 4 cut(s) 105, 232, 302, 553
BstSFI CTRYAG 4 cut(s) 2, 54, 142, 765
BstSLI GKGCMC 3 cut(s) 38, 98, 529
BstUI CGCG 2 cut(s) 180, 208
BstV1I GCAGC 8 cut(s) 37, 40, 97, 100, 128, 187, 229, 413
BstX2I RGATCY 1 cut(s) 587
BstYI RGATCY 1 cut(s) 587
BstZI CGGCCG 2 cut(s) 230, 261
BsuRI GGCC 7 cut(s) 65, 228, 232, 263, 480, 552, 730
BtsIMutI CAGTG 1 cut(s) 287
BveI ACCTGC 1 cut(s) 245
Cac8I GCNNGC 3 cut(s) 6, 185, 230
CfoI GCGC 1 cut(s) 180
Cfr10I RCCGGY 3 cut(s) 152, 228, 263
Cfr13I GGNCC 3 cut(s) 63, 551, 728
CseI GACGC 1 cut(s) 214
DdeI CTNAG 3 cut(s) 290, 660, 754
DpnI GATC 4 cut(s) 41, 71, 101, 589
DpnII GATC 4 cut(s) 39, 69, 99, 587
DraIII CACNNNGTG 1 cut(s) 274
EaeI YGGCCR 2 cut(s) 230, 261
EagI CGGCCG 2 cut(s) 230, 261
EciI GGCGGA 1 cut(s) 23
EclXI CGGCCG 2 cut(s) 230, 261
Eco52I CGGCCG 2 cut(s) 230, 261
Eco88I CYCGRG 1 cut(s) 519
EcoRII CCWGG 2 cut(s) 302, 553
FaiI YATR 9 cut(s) 161, 309, 392, 446, 492, 494, 705, 733, 735
FalI AAGNNNNNCTT 2 cut(s) 408, 440
FauI CCCGC 2 cut(s) 201, 693
FauNDI CATATG 1 cut(s) 733
Fnu4HI GCNGC 9 cut(s) 51, 54, 111, 114, 142, 176, 181, 243, 402
FseI GGCCGGCC 1 cut(s) 232
Fsp4HI GCNGC 9 cut(s) 51, 54, 111, 114, 142, 176, 181, 243, 402
FspBI CTAG 1 cut(s) 778
GlaI GCGC 1 cut(s) 179
GluI GCNGC 9 cut(s) 51, 54, 111, 114, 142, 176, 181, 243, 402
GsaI CCCAGC 3 cut(s) 241, 249, 543
HaeIII GGCC 7 cut(s) 65, 228, 232, 263, 480, 552, 730
HapII CCGG 5 cut(s) 106, 153, 229, 233, 264
HgaI GACGC 1 cut(s) 214
HhaI GCGC 1 cut(s) 180
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 570
HinfI GANTC 3 cut(s) 580, 631, 740
HpaII CCGG 5 cut(s) 106, 153, 229, 233, 264
HphI GGTGA 2 cut(s) 459, 569
Hpy166II GTNNAC 3 cut(s) 436, 527, 630
Hpy188I TCNGA 2 cut(s) 132, 352
Hpy188III TCNNGA 2 cut(s) 202, 772
Hpy8I GTNNAC 3 cut(s) 436, 527, 630
HpyAV CCTTC 3 cut(s) 470, 658, 719
HpyCH4III ACNGT 2 cut(s) 505, 766
HpyCH4V TGCA 8 cut(s) 4, 56, 125, 144, 167, 254, 365, 527
HpyF10VI GCNNNNNNNGC 8 cut(s) 14, 62, 122, 184, 234, 251, 260, 549
HpyF3I CTNAG 3 cut(s) 290, 660, 754
HspAI GCGC 1 cut(s) 178
KroI GCCGGC 1 cut(s) 228
KroNI GCCGGC 1 cut(s) 230
Kzo9I GATC 4 cut(s) 39, 69, 99, 587
Lsp1109I GCAGC 8 cut(s) 37, 40, 97, 100, 128, 187, 229, 413
LweI GCATC 1 cut(s) 352
MaeI CTAG 1 cut(s) 778
MalI GATC 4 cut(s) 41, 71, 101, 589
MboI GATC 4 cut(s) 39, 69, 99, 587
MboII GAAGA 4 cut(s) 371, 407, 577, 734
MflI RGATCY 1 cut(s) 587
MhlI GDGCHC 3 cut(s) 38, 98, 529
MluCI AATT 1 cut(s) 407
MlyI GAGTC 2 cut(s) 589, 625
MmeI TCCRAC 1 cut(s) 352
MroNI GCCGGC 1 cut(s) 228
MseI TTAA 2 cut(s) 546, 675
MspCI CTTAAG 1 cut(s) 674
MspI CCGG 5 cut(s) 106, 153, 229, 233, 264
MspR9I CCNGG 4 cut(s) 107, 234, 304, 555
MvaI CCWGG 2 cut(s) 304, 555
MvnI CGCG 2 cut(s) 180, 208
MwoI GCNNNNNNNGC 8 cut(s) 14, 62, 122, 184, 234, 251, 260, 549
NaeI GCCGGC 1 cut(s) 230
NciI CCSGG 2 cut(s) 107, 234
NdeI CATATG 1 cut(s) 733
NdeII GATC 4 cut(s) 39, 69, 99, 587
NgoMIV GCCGGC 1 cut(s) 228
NlaIV GGNNCC 2 cut(s) 64, 589
NmuCI GTSAC 7 cut(s) 266, 285, 314, 418, 465, 557, 714
PaeR7I CTCGAG 1 cut(s) 519
PdiI GCCGGC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 740
PflMI CCANNNNNTGG 2 cut(s) 334, 610
PkrI GCNGC 9 cut(s) 52, 55, 112, 115, 143, 177, 182, 244, 403
Ple19I CGATCG 2 cut(s) 42, 102
PleI GAGTC 2 cut(s) 588, 625
PpsI GAGTC 2 cut(s) 588, 625
PshBI ATTAAT 1 cut(s) 546
Psp6I CCWGG 2 cut(s) 302, 553
PspFI CCCAGC 3 cut(s) 237, 245, 539
PspGI CCWGG 2 cut(s) 302, 553
PspN4I GGNNCC 2 cut(s) 64, 589
PspPI GGNCC 3 cut(s) 63, 551, 728
PspXI VCTCGAGB 1 cut(s) 519
PstI CTGCAG 3 cut(s) 6, 58, 146
PsuI RGATCY 1 cut(s) 587
PvuI CGATCG 2 cut(s) 42, 102
RigI GGCCGGCC 1 cut(s) 232
SaqAI TTAA 2 cut(s) 546, 675
SatI GCNGC 9 cut(s) 51, 54, 111, 114, 142, 176, 181, 243, 402
Sau3AI GATC 4 cut(s) 39, 69, 99, 587
Sau96I GGNCC 3 cut(s) 63, 551, 728
SchI GAGTC 2 cut(s) 589, 625
ScrFI CCNGG 4 cut(s) 107, 234, 304, 555
SduI GDGCHC 3 cut(s) 38, 98, 529
SetI ASST 7 cut(s) 199, 259, 406, 526, 574, 624, 779
SfaNI GCATC 1 cut(s) 352
SfcI CTRYAG 4 cut(s) 2, 54, 142, 765
Sfr274I CTCGAG 1 cut(s) 519
SgrAI CRCCGGYG 1 cut(s) 152
SlaI CTCGAG 1 cut(s) 519
SmlI CTYRAG 2 cut(s) 519, 674
SmoI CTYRAG 2 cut(s) 519, 674
Sse9I AATT 1 cut(s) 407
SsiI CCGC 9 cut(s) 8, 86, 136, 180, 187, 208, 497, 614, 686
SspMI CTAG 1 cut(s) 778
StyD4I CCNGG 4 cut(s) 105, 232, 302, 553
TaaI ACNGT 2 cut(s) 505, 766
TaqI TCGA 5 cut(s) 42, 102, 343, 520, 599
TasI AATT 1 cut(s) 407
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 1 cut(s) 740
Tru1I TTAA 2 cut(s) 546, 675
Tru9I TTAA 2 cut(s) 546, 675
TscAI CASTG 1 cut(s) 294
TseFI GTSAC 7 cut(s) 266, 285, 314, 418, 465, 557, 714
TseI GCWGC 8 cut(s) 50, 53, 110, 113, 141, 175, 242, 401
Tsp45I GTSAC 7 cut(s) 266, 285, 314, 418, 465, 557, 714
TspDTI ATGAA 2 cut(s) 429, 489
TspRI CASTG 1 cut(s) 294
Van91I CCANNNNNTGG 2 cut(s) 334, 610
Vha464I CTTAAG 1 cut(s) 674
VneI GTGCAC 1 cut(s) 525
VspI ATTAAT 1 cut(s) 546
XapI RAATTY 1 cut(s) 407
XhoI CTCGAG 1 cut(s) 519
XspI CTAG 1 cut(s) 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.