Rh3AG039800

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000368
Physical Location & Seq
Reverse (-)
2659329 .. 2661762
2434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG039800.1

Sequence Viewer

Length: 927 bp
ATGGCTCTCCGTCAACTTTTTATCCAAGGAACATACTTGAGGTTATCGCCTATAAGATTTTTAAAAGCTCTCAGGGTGTTTAGGAGACTCACAATGGCAACCGTACTGTTGTGTTTTTTGTTGATGTGTCATTTGAATCCAGCATTGGCTGCCTCAGGTGGATCGGTCGGCGGAGATTCTTGGTCGGATTCCGATTCCGATTCCGATTCCGATTCCGATTCGCATCTGTATTCCTCGGATTCGGATTCATGGTCGCTCCCATCATCAAGTCCTTCGAAACCGAATTCGCCCGAGGAGCGTAAAGGTCAGGCAGTTTTTTGTTTGTTGATTATGGGGGCAATTGTGGTGTTGGCATTTACATGTTCATCAAGATCTACTGCCACTGTTGTCAAGCTTCAGGTTGGTCTGTTGAGCACAGCGCGAACACTCCTAAAGGATCTTGATCAGATAGCTGAAACTGCAGATACGTCTACTCGCAAGGATTTGAGCCGTGTTTTGACCGAGGCAACAGCAGCTTTGCTTCGCCATCCTCATCATTGTATCTCAGGCTATTCTTCTGTGGCTCCCAAAGAAAGTGTGAAGGATGCACAAAAATGCTTTAATCAAGTTTCATTGGAAGAGAGGGCTAAATTTGACGAAGAGACACTTGTTAATGTGAACAACATAAAAAGGAAACGTACAACAAAGAGACCTAAGGGATTGCAAAATCAATATATAGTGGTTACCGTTCTCGTGGGTGTGAAAGGAATGCACAAATTTCCGGCCATCAATGATAATAGTGACTTAAACGAAGCCTTGAAAAATCTCAGATCTATTCCCTCACGTGACTTATTAGCAGTACGAGTGTTATGGACTCCTCAACAGGAAAATGATACTTTGTCGGAGCAAGAACTACTTAAAGATTACCCCCTTCTGAAACAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

308

Amino Acids

34.12

Weight (kDa)

8.84

Isoelectric Point (pI)

54.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 127 - 307 3.1e-64 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 470
AccII CGCG 1 cut(s) 421
AciI CCGC 1 cut(s) 171
AclWI GGATC 2 cut(s) 169, 444
AcoI YGGCCR 1 cut(s) 762
AcsI RAATTY 3 cut(s) 283, 629, 755
AcuI CTGAAG 1 cut(s) 380
AcvI CACGTG 1 cut(s) 824
AfaI GTAC 3 cut(s) 105, 679, 840
AflIII ACRYGT 1 cut(s) 359
AgsI TTSAA 2 cut(s) 136, 799
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AluBI AGCT 4 cut(s) 68, 394, 452, 515
AluI AGCT 4 cut(s) 68, 394, 452, 515
Alw21I GWGCWC 1 cut(s) 416
Alw26I GTCTC 3 cut(s) 79, 635, 682
AlwI GGATC 2 cut(s) 169, 444
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 1 cut(s) 762
ApeKI GCWGC 2 cut(s) 149, 512
ApoI RAATTY 3 cut(s) 283, 629, 755
AspLEI GCGC 1 cut(s) 421
AsuII TTCGAA 1 cut(s) 275
AvaI CYCGRG 1 cut(s) 290
AxyI CCTNAGG 2 cut(s) 154, 693
BauI CACGAG 1 cut(s) 731
BbrPI CACGTG 1 cut(s) 824
Bbv12I GWGCWC 1 cut(s) 416
BbvI GCAGC 2 cut(s) 136, 524
BccI CCATC 3 cut(s) 268, 534, 773
BceAI ACGGC 1 cut(s) 474
BclI TGATCA 1 cut(s) 442
BcoDI GTCTC 3 cut(s) 79, 635, 682
BfmI CTRYAG 1 cut(s) 459
BglII AGATCT 2 cut(s) 371, 809
BisI GCNGC 2 cut(s) 150, 513
BlsI GCNGC 2 cut(s) 151, 514
BmeT110I CYCGRG 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 564
BmsI GCATC 2 cut(s) 232, 574
Bpu14I TTCGAA 1 cut(s) 275
BpuEI CTTGAG 1 cut(s) 58
BsaAI YACGTR 1 cut(s) 824
BsaBI GATNNNNATC 2 cut(s) 222, 441
BsaI GGTCTC 1 cut(s) 682
BsaJI CCNNGG 4 cut(s) 25, 234, 291, 501
Bse21I CCTNAGG 2 cut(s) 154, 693
Bse8I GATNNNNATC 2 cut(s) 222, 441
BseDI CCNNGG 4 cut(s) 25, 234, 291, 501
BseGI GGATG 2 cut(s) 526, 589
BseJI GATNNNNATC 2 cut(s) 222, 441
BseMII CTCAG 4 cut(s) 85, 168, 558, 820
BseRI GAGGAG 2 cut(s) 308, 846
BseXI GCAGC 2 cut(s) 136, 524
Bsh1236I CGCG 1 cut(s) 421
Bsh1285I CGRYCG 1 cut(s) 168
BshFI GGCC 1 cut(s) 764
BsiEI CGRYCG 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 416
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 1 cut(s) 761
BsmAI GTCTC 3 cut(s) 79, 635, 682
BsmI GAATGC 1 cut(s) 753
BsnI GGCC 1 cut(s) 764
Bso31I GGTCTC 1 cut(s) 682
BsoBI CYCGRG 1 cut(s) 290
Bsp119I TTCGAA 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 416
Bsp143I GATC 5 cut(s) 161, 371, 436, 442, 809
BspACI CCGC 1 cut(s) 171
BspANI GGCC 1 cut(s) 764
BspCNI CTCAG 4 cut(s) 84, 167, 557, 819
BspFNI CGCG 1 cut(s) 421
BspLI GGNNCC 1 cut(s) 564
BspMAI CTGCAG 1 cut(s) 463
BspPI GGATC 2 cut(s) 169, 444
BspT104I TTCGAA 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 682
BssECI CCNNGG 4 cut(s) 25, 234, 291, 501
BssMI GATC 5 cut(s) 161, 371, 436, 442, 809
BssSI CACGAG 1 cut(s) 731
BssT1I CCWWGG 1 cut(s) 25
Bst2BI CACGAG 1 cut(s) 731
Bst4CI ACNGT 4 cut(s) 103, 108, 385, 727
Bst6I CTCTTC 2 cut(s) 612, 633
BstAPI GCANNNNNTGC 1 cut(s) 149
BstBAI YACGTR 1 cut(s) 824
BstBI TTCGAA 1 cut(s) 275
BstDEI CTNAG 5 cut(s) 71, 154, 544, 693, 806
BstEII GGTNACC 1 cut(s) 721
BstF5I GGATG 2 cut(s) 526, 589
BstFNI CGCG 1 cut(s) 421
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 5 cut(s) 164, 374, 439, 445, 812
BstMAI GTCTC 3 cut(s) 79, 635, 682
BstMBI GATC 5 cut(s) 161, 371, 436, 442, 809
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 4 cut(s) 149, 295, 458, 512
BstNSI RCATGY 1 cut(s) 363
BstPI GGTNACC 1 cut(s) 721
BstSFI CTRYAG 1 cut(s) 459
BstUI CGCG 1 cut(s) 421
BstV1I GCAGC 2 cut(s) 136, 524
BstX2I RGATCY 3 cut(s) 371, 436, 809
BstYI RGATCY 3 cut(s) 371, 436, 809
Bsu36I CCTNAGG 2 cut(s) 154, 693
BsuRI GGCC 1 cut(s) 764
BtsCI GGATG 2 cut(s) 526, 589
BtsIMutI CAGTG 1 cut(s) 381
CfoI GCGC 1 cut(s) 421
Csp6I GTAC 3 cut(s) 104, 678, 839
CviAII CATG 2 cut(s) 249, 360
CviQI GTAC 3 cut(s) 104, 678, 839
DdeI CTNAG 5 cut(s) 71, 154, 544, 693, 806
DpnI GATC 5 cut(s) 163, 373, 438, 444, 811
DpnII GATC 5 cut(s) 161, 371, 436, 442, 809
DraI TTTAAA 1 cut(s) 63
EaeI YGGCCR 1 cut(s) 762
Eam1104I CTCTTC 2 cut(s) 612, 633
EarI CTCTTC 2 cut(s) 612, 633
EciI GGCGGA 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 25
Eco31I GGTCTC 1 cut(s) 682
Eco57I CTGAAG 1 cut(s) 380
Eco72I CACGTG 1 cut(s) 824
Eco81I CCTNAGG 2 cut(s) 154, 693
Eco88I CYCGRG 1 cut(s) 290
Eco91I GGTNACC 1 cut(s) 721
EcoO65I GGTNACC 1 cut(s) 721
EcoRI GAATTC 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 2 cut(s) 252, 363
FaiI YATR 9 cut(s) 34, 53, 250, 332, 361, 665, 714, 716, 850
FalI AAGNNNNNCTT 4 cut(s) 630, 662, 879, 911
FatI CATG 2 cut(s) 248, 359
FbaI TGATCA 1 cut(s) 442
FblI GTMKAC 1 cut(s) 470
Fnu4HI GCNGC 2 cut(s) 150, 513
FokI GGATG 2 cut(s) 513, 596
Fsp4HI GCNGC 2 cut(s) 150, 513
GlaI GCGC 1 cut(s) 420
GluI GCNGC 2 cut(s) 150, 513
HaeIII GGCC 1 cut(s) 764
HapII CCGG 1 cut(s) 761
HhaI GCGC 1 cut(s) 421
Hin1II CATG 2 cut(s) 252, 363
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HincII GTYRAC 1 cut(s) 14
HindII GTYRAC 1 cut(s) 14
HindIII AAGCTT 1 cut(s) 392
HpaII CCGG 1 cut(s) 761
Hpy166II GTNNAC 3 cut(s) 14, 471, 658
Hpy188III TCNNGA 2 cut(s) 369, 440
Hpy8I GTNNAC 3 cut(s) 14, 471, 658
HpyAV CCTTC 3 cut(s) 282, 574, 920
HpyCH4III ACNGT 4 cut(s) 103, 108, 385, 727
HpyCH4IV ACGT 3 cut(s) 467, 676, 823
HpyCH4V TGCA 4 cut(s) 461, 587, 703, 751
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 295, 458, 512
HpyF3I CTNAG 5 cut(s) 71, 154, 544, 693, 806
HpySE526I ACGT 3 cut(s) 467, 676, 823
Hsp92II CATG 2 cut(s) 252, 363
HspAI GCGC 1 cut(s) 419
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 5 cut(s) 161, 371, 436, 442, 809
LmnI GCTCC 4 cut(s) 261, 295, 568, 883
LpnPI CCDG 8 cut(s) 58, 141, 153, 293, 383, 531, 774, 848
Lsp1109I GCAGC 2 cut(s) 136, 524
LweI GCATC 2 cut(s) 232, 574
MaeII ACGT 3 cut(s) 467, 676, 823
MaeIII GTNAC 3 cut(s) 721, 779, 824
MalI GATC 5 cut(s) 163, 373, 438, 444, 811
MboI GATC 5 cut(s) 161, 371, 436, 442, 809
MboII GAAGA 3 cut(s) 546, 629, 650
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 3 cut(s) 371, 436, 809
MhlI GDGCHC 1 cut(s) 416
MluCI AATT 5 cut(s) 283, 339, 629, 755, 920
MlyI GAGTC 2 cut(s) 81, 847
MmeI TCCRAC 2 cut(s) 165, 861
MnlI CCTC 9 cut(s) 33, 163, 244, 286, 496, 540, 615, 829, 867
MseI TTAA 5 cut(s) 62, 600, 651, 785, 897
MslI CAYNNNNRTG 2 cut(s) 358, 592
MspI CCGG 1 cut(s) 761
MunI CAATTG 1 cut(s) 339
Mva1269I GAATGC 1 cut(s) 753
MvnI CGCG 1 cut(s) 421
MwoI GCNNNNNNNGC 4 cut(s) 149, 295, 458, 512
NdeII GATC 5 cut(s) 161, 371, 436, 442, 809
NlaIII CATG 2 cut(s) 252, 363
NlaIV GGNNCC 1 cut(s) 564
NmuCI GTSAC 2 cut(s) 779, 824
NspI RCATGY 1 cut(s) 363
NspV TTCGAA 1 cut(s) 275
PciI ACATGT 1 cut(s) 359
PctI GAATGC 1 cut(s) 753
PkrI GCNGC 2 cut(s) 151, 514
PleI GAGTC 2 cut(s) 81, 847
PmaCI CACGTG 1 cut(s) 824
PmlI CACGTG 1 cut(s) 824
PpsI GAGTC 2 cut(s) 81, 847
Ppu21I YACGTR 1 cut(s) 824
PscI ACATGT 1 cut(s) 359
PspCI CACGTG 1 cut(s) 824
PspEI GGTNACC 1 cut(s) 721
PspN4I GGNNCC 1 cut(s) 564
PstI CTGCAG 1 cut(s) 463
PsuI RGATCY 3 cut(s) 371, 436, 809
RsaI GTAC 3 cut(s) 105, 679, 840
RsaNI GTAC 3 cut(s) 104, 678, 839
RseI CAYNNNNRTG 2 cut(s) 358, 592
SaqAI TTAA 5 cut(s) 62, 600, 651, 785, 897
SatI GCNGC 2 cut(s) 150, 513
Sau3AI GATC 5 cut(s) 161, 371, 436, 442, 809
SchI GAGTC 2 cut(s) 81, 847
SduI GDGCHC 1 cut(s) 416
SfaNI GCATC 2 cut(s) 232, 574
SfcI CTRYAG 1 cut(s) 459
SfuI TTCGAA 1 cut(s) 275
SmiMI CAYNNNNRTG 2 cut(s) 358, 592
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 5 cut(s) 283, 339, 629, 755, 920
SsiI CCGC 1 cut(s) 171
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 4 cut(s) 103, 108, 385, 727
TaiI ACGT 3 cut(s) 470, 679, 826
TaqI TCGA 1 cut(s) 275
TaqII GACCGA 2 cut(s) 154, 515
TasI AATT 5 cut(s) 283, 339, 629, 755, 920
Tru1I TTAA 5 cut(s) 62, 600, 651, 785, 897
Tru9I TTAA 5 cut(s) 62, 600, 651, 785, 897
TscAI CASTG 1 cut(s) 388
TseFI GTSAC 2 cut(s) 779, 824
TseI GCWGC 2 cut(s) 149, 512
Tsp45I GTSAC 2 cut(s) 779, 824
TspDTI ATGAA 3 cut(s) 237, 354, 600
TspRI CASTG 1 cut(s) 388
XapI RAATTY 3 cut(s) 283, 629, 755
XceI RCATGY 1 cut(s) 363
XmiI GTMKAC 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.