Rw0G023520

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01088
OG0000368
Physical Location & Seq
Reverse (-)
18355 .. 21066
2712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G023520.1

Sequence Viewer

Length: 753 bp
ATGGCGCTGAGAAATCCGGCCACCGTCGCCGCGTTATTGCTCTCTCTTCTATTGATTTCCGACCCCAATTTGGCGTCCACCGCTACAGTTGGGCGGTCCGGCGGAAGCTTGTTCCCCTCCGGCGAAGATTCTCTATTATTCTTCTGTAAGGTTGGTCTGGTGGGCAAGGCGCGATCACTTCAAAAGGATCTTAATCGACTTACTGAAACTACAGATATGTCTACGCCTACGGGTTTGAGCCATCTTTTGACAGGGGCATCAACATCTTTGCTTCGCAATCTTGATTATTGCATCTCAAGTTATTCGTCTGTTACTCGAAAGTCTGAGACAGAAGATGCAGAGCAATGCTTCAAACAACTTTCTATGGAAGAAGCAGCTAAATTTGATGAAGTGACGCTTGCCAATGTGAACAACTTTATATTGTATTCAACAAGCCAGTCACCAAATGAAGTCCACAAAGAATATATAGTGGTTACAATTTTGGCGGCTACTCGAGGAGCACCAATGTTGCCCAGCATCAATGGCCCTGGTGACTTGAAGAAAGCATTACAGAGTCTTGGATCCATTCCCTCGAGCAGAATACTGGCGGTTGAGGTCTTGTGGACTCCTCAGCAAGAAAATGATACTTTGACTGAGAAGGAACTACTTAAAGATTACCCGCAGTTGAGGGGATTTTATGATGAAGTGTCACTTGAAGAAGGGCCATATGATGATTCCCACCCGTTCTTAGGGGTTACTGTAGTCAAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

250

Amino Acids

27.12

Weight (kDa)

4.89

Isoelectric Point (pI)

48.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 50 - 223 7.1e-56 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 221
AccII CGCG 2 cut(s) 32, 172
AciI CCGC 7 cut(s) 30, 81, 94, 102, 485, 587, 659
AclWI GGATC 3 cut(s) 195, 555, 568
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 1 cut(s) 380
AcyI GRCGYC 1 cut(s) 74
AfiI CCNNNNNNNGG 2 cut(s) 70, 728
AgsI TTSAA 5 cut(s) 182, 352, 429, 538, 695
AjnI CCWGG 1 cut(s) 526
AluBI AGCT 3 cut(s) 108, 377, 750
AluI AGCT 3 cut(s) 108, 377, 750
Alw21I GWGCWC 1 cut(s) 502
Alw26I GTCTC 1 cut(s) 320
AlwI GGATC 3 cut(s) 195, 555, 568
Ama87I CYCGRG 2 cut(s) 492, 571
AoxI GGCC 3 cut(s) 18, 523, 701
ApeKI GCWGC 1 cut(s) 374
ApoI RAATTY 1 cut(s) 380
AspLEI GCGC 2 cut(s) 7, 172
AspS9I GGNCC 3 cut(s) 96, 524, 701
AsuHPI GGTGA 2 cut(s) 432, 542
AvaI CYCGRG 2 cut(s) 492, 571
AvaII GGWCC 1 cut(s) 96
BamHI GGATCC 1 cut(s) 560
Bbv12I GWGCWC 1 cut(s) 502
BbvCI CCTCAGC 1 cut(s) 609
BbvI GCAGC 1 cut(s) 386
BccI CCATC 1 cut(s) 249
BciT130I CCWGG 1 cut(s) 528
BcoDI GTCTC 1 cut(s) 320
BfaI CTAG 1 cut(s) 751
BfmI CTRYAG 3 cut(s) 84, 210, 738
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 3 cut(s) 30, 375, 486
BlsI GCNGC 3 cut(s) 31, 376, 487
Bme1390I CCNGG 1 cut(s) 528
Bme18I GGWCC 1 cut(s) 96
BmeT110I CYCGRG 2 cut(s) 492, 571
BmgT120I GGNCC 3 cut(s) 96, 524, 701
BmiI GGNNCC 1 cut(s) 562
BmrFI CCNGG 1 cut(s) 528
BmsI GCATC 4 cut(s) 266, 300, 325, 525
Bpu10I CCTNAGC 1 cut(s) 609
BpuEI CTTGAG 1 cut(s) 280
BsaBI GATNNNNATC 1 cut(s) 192
BsaHI GRCGYC 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 526
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 728
Bse1I ACTGG 2 cut(s) 436, 588
Bse3DI GCAATG 1 cut(s) 350
Bse8I GATNNNNATC 1 cut(s) 192
BseBI CCWGG 1 cut(s) 528
BseDI CCNNGG 1 cut(s) 526
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 2 cut(s) 70, 728
BseMI GCAATG 1 cut(s) 350
BseMII CTCAG 3 cut(s) 315, 623, 624
BseNI ACTGG 2 cut(s) 436, 588
BseRI GAGGAG 2 cut(s) 510, 597
BseXI GCAGC 1 cut(s) 386
BseYI CCCAGC 1 cut(s) 512
Bsh1236I CGCG 2 cut(s) 32, 172
BshFI GGCC 3 cut(s) 20, 525, 703
BsiHKAI GWGCWC 1 cut(s) 502
BsiHKCI CYCGRG 2 cut(s) 492, 571
BsiSI CCGG 3 cut(s) 17, 99, 120
BslI CCNNNNNNNGG 2 cut(s) 70, 728
BsmAI GTCTC 1 cut(s) 320
BsnI GGCC 3 cut(s) 20, 525, 703
BsoBI CYCGRG 2 cut(s) 492, 571
Bsp1286I GDGCHC 1 cut(s) 502
Bsp143I GATC 3 cut(s) 173, 187, 560
BspACI CCGC 7 cut(s) 30, 81, 94, 102, 485, 587, 659
BspANI GGCC 3 cut(s) 20, 525, 703
BspCNI CTCAG 3 cut(s) 316, 622, 625
BspFNI CGCG 2 cut(s) 32, 172
BspLI GGNNCC 1 cut(s) 562
BspPI GGATC 3 cut(s) 195, 555, 568
BsrDI GCAATG 1 cut(s) 350
BsrI ACTGG 2 cut(s) 436, 588
BssECI CCNNGG 1 cut(s) 526
BssMI GATC 3 cut(s) 173, 187, 560
BssNI GRCGYC 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 528
Bst4CI ACNGT 3 cut(s) 25, 88, 739
Bst6I CTCTTC 1 cut(s) 51
BstACI GRCGYC 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 5 cut(s) 8, 324, 609, 633, 727
BstFNI CGCG 2 cut(s) 32, 172
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 172
BstKTI GATC 3 cut(s) 176, 190, 563
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 3 cut(s) 173, 187, 560
BstMWI GCNNNNNNNGC 3 cut(s) 26, 80, 522
BstNI CCWGG 1 cut(s) 528
BstSCI CCNGG 1 cut(s) 526
BstSFI CTRYAG 3 cut(s) 84, 210, 738
BstUI CGCG 2 cut(s) 32, 172
BstV1I GCAGC 1 cut(s) 386
BstX2I RGATCY 2 cut(s) 187, 560
BstYI RGATCY 2 cut(s) 187, 560
BsuRI GGCC 3 cut(s) 20, 525, 703
Cac8I GCNNGC 1 cut(s) 399
CfoI GCGC 2 cut(s) 7, 172
Cfr13I GGNCC 3 cut(s) 96, 524, 701
CpoI CGGWCCG 1 cut(s) 96
CseI GACGC 2 cut(s) 63, 403
CspI CGGWCCG 1 cut(s) 96
CviJI RGCY 9 cut(s) 20, 108, 240, 377, 435, 488, 525, 703, 750
CviKI_1 RGCY 9 cut(s) 20, 108, 240, 377, 435, 488, 525, 703, 750
DdeI CTNAG 5 cut(s) 8, 324, 609, 633, 727
DpnI GATC 3 cut(s) 175, 189, 562
DpnII GATC 3 cut(s) 173, 187, 560
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
EciI GGCGGA 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 96
Eco88I CYCGRG 2 cut(s) 492, 571
EcoRII CCWGG 1 cut(s) 526
FaiI YATR 8 cut(s) 218, 365, 419, 465, 467, 678, 706, 708
FalI AAGNNNNNCTT 4 cut(s) 381, 413, 675, 707
FauI CCCGC 1 cut(s) 666
FauNDI CATATG 1 cut(s) 706
FblI GTMKAC 1 cut(s) 221
Fnu4HI GCNGC 3 cut(s) 30, 375, 486
Fsp4HI GCNGC 3 cut(s) 30, 375, 486
FspBI CTAG 1 cut(s) 751
GlaI GCGC 2 cut(s) 6, 171
GluI GCNGC 3 cut(s) 30, 375, 486
GsaI CCCAGC 1 cut(s) 516
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 20, 525, 703
HapII CCGG 3 cut(s) 17, 99, 120
HgaI GACGC 2 cut(s) 63, 403
HhaI GCGC 2 cut(s) 7, 172
Hin1I GRCGYC 1 cut(s) 74
Hin6I GCGC 2 cut(s) 5, 170
HinP1I GCGC 2 cut(s) 5, 170
HindIII AAGCTT 1 cut(s) 106
HinfI GANTC 4 cut(s) 128, 553, 604, 713
HpaII CCGG 3 cut(s) 17, 99, 120
HphI GGTGA 2 cut(s) 432, 542
Hpy166II GTNNAC 5 cut(s) 78, 222, 409, 454, 603
Hpy188I TCNGA 2 cut(s) 61, 325
Hpy188III TCNNGA 2 cut(s) 281, 745
Hpy8I GTNNAC 5 cut(s) 78, 222, 409, 454, 603
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 2 cut(s) 631, 692
HpyCH4III ACNGT 3 cut(s) 25, 88, 739
HpyCH4V TGCA 2 cut(s) 291, 338
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 80, 522
HpyF3I CTNAG 5 cut(s) 8, 324, 609, 633, 727
Hsp92I GRCGYC 1 cut(s) 74
HspAI GCGC 2 cut(s) 5, 170
Kzo9I GATC 3 cut(s) 173, 187, 560
LmnI GCTCC 1 cut(s) 497
Lsp1109I GCAGC 1 cut(s) 386
LweI GCATC 4 cut(s) 266, 300, 325, 525
MaeI CTAG 1 cut(s) 751
MaeIII GTNAC 7 cut(s) 310, 391, 438, 472, 530, 687, 733
MalI GATC 3 cut(s) 175, 189, 562
MboI GATC 3 cut(s) 173, 187, 560
MboII GAAGA 7 cut(s) 38, 133, 137, 344, 380, 550, 707
MflI RGATCY 2 cut(s) 187, 560
MhlI GDGCHC 1 cut(s) 502
MluCI AATT 3 cut(s) 67, 380, 477
MlyI GAGTC 2 cut(s) 562, 598
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 6 cut(s) 127, 488, 580, 586, 618, 660
MseI TTAA 2 cut(s) 192, 648
MspI CCGG 3 cut(s) 17, 99, 120
MspR9I CCNGG 1 cut(s) 528
MvaI CCWGG 1 cut(s) 528
MvnI CGCG 2 cut(s) 32, 172
MwoI GCNNNNNNNGC 3 cut(s) 26, 80, 522
NdeI CATATG 1 cut(s) 706
NdeII GATC 3 cut(s) 173, 187, 560
NlaIV GGNNCC 1 cut(s) 562
NmuCI GTSAC 4 cut(s) 391, 438, 530, 687
PaeR7I CTCGAG 2 cut(s) 492, 571
PfeI GAWTC 2 cut(s) 128, 713
PkrI GCNGC 3 cut(s) 31, 376, 487
PleI GAGTC 2 cut(s) 561, 598
PpsI GAGTC 2 cut(s) 561, 598
Psp6I CCWGG 1 cut(s) 526
PspFI CCCAGC 1 cut(s) 512
PspGI CCWGG 1 cut(s) 526
PspN4I GGNNCC 1 cut(s) 562
PspPI GGNCC 3 cut(s) 96, 524, 701
PspXI VCTCGAGB 2 cut(s) 492, 571
PsuI RGATCY 2 cut(s) 187, 560
Rsr2I CGGWCCG 1 cut(s) 96
RsrII CGGWCCG 1 cut(s) 96
SaqAI TTAA 2 cut(s) 192, 648
SatI GCNGC 3 cut(s) 30, 375, 486
Sau3AI GATC 3 cut(s) 173, 187, 560
Sau96I GGNCC 3 cut(s) 96, 524, 701
SchI GAGTC 2 cut(s) 562, 598
ScrFI CCNGG 1 cut(s) 528
SduI GDGCHC 1 cut(s) 502
SetI ASST 5 cut(s) 110, 153, 379, 597, 752
SfaNI GCATC 4 cut(s) 266, 300, 325, 525
SfcI CTRYAG 3 cut(s) 84, 210, 738
Sfr274I CTCGAG 2 cut(s) 492, 571
SinI GGWCC 1 cut(s) 96
SlaI CTCGAG 2 cut(s) 492, 571
SmlI CTYRAG 3 cut(s) 295, 492, 571
SmoI CTYRAG 3 cut(s) 295, 492, 571
Sse9I AATT 3 cut(s) 67, 380, 477
SsiI CCGC 7 cut(s) 30, 81, 94, 102, 485, 587, 659
SspMI CTAG 1 cut(s) 751
StyD4I CCNGG 1 cut(s) 526
TaaI ACNGT 3 cut(s) 25, 88, 739
TaqI TCGA 4 cut(s) 196, 316, 493, 572
TasI AATT 3 cut(s) 67, 380, 477
TauI GCSGC 2 cut(s) 32, 488
TfiI GAWTC 2 cut(s) 128, 713
Tru1I TTAA 2 cut(s) 192, 648
Tru9I TTAA 2 cut(s) 192, 648
TseFI GTSAC 4 cut(s) 391, 438, 530, 687
TseI GCWGC 1 cut(s) 374
Tsp45I GTSAC 4 cut(s) 391, 438, 530, 687
TspDTI ATGAA 3 cut(s) 402, 462, 696
VpaK11BI GGWCC 1 cut(s) 96
XapI RAATTY 1 cut(s) 380
XhoI CTCGAG 2 cut(s) 492, 571
XmiI GTMKAC 1 cut(s) 221
XspI CTAG 1 cut(s) 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.