RchiOBHm_Chr3g0451991

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000368
Physical Location & Seq
Reverse (-)
2829556 .. 2831552
1997 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41920

Sequence Viewer

Length: 714 bp
ATGCCTGCTATGGCCGCAGTGCTGTTAGGGTTGCTATTGATGTGTGGCCCCAATTCGGCTTTGGCAGCCTCCGGAGGGCGGTGCGGTGGAAGCCGATCTACGTCATCCTCCTCGAGGTTCAGGTCGTCCTCGTCAAGCTACAGGTGGCGGTCGTCATCAGGGTCAAAGTCAACGTCTTCCAATTCGGATTCCCTTAATTCAAGGGCTACCTTGACCTCAAGTGTTCTGAAGATTCAGGTGACTCCAAGTCAAAACATAGCAGATGCAGAGAAATGCTTCAATAAAATTTCAGTTGAAGAGAGGGCCAAATTTGATGAAGAAACTCTTGTTAATGTGAACAACAAAAAGAAGAAAAGCCCAACGAGCAAGAAAGACAACAAATTCCAAAATGAATATATAGTGGTTACACTATTGGTCGCTACTGAAGGCGAGCATATGTTGCCCACCATGAATGGCAGGGCTGAGTTAAAGGCAGCATTAATGCAAAGCCTCAAATGCTTTACCTCAAAGAATATAATAGTAAGAAAAAGTTTTATCACATTGATCATAAACTTTAAACTTCTATCTGTTTTTGATGGTGCAATTCACCTAATTTTTTTCTGTTCTTTTTTGTACAGGCAACTGAAGGGTACGTTATGGACTCCACAGCAAGAAAATGACGTGCTATTGGAGCAGGAACTACTGGAAGATTACCCACTTCTGAAGCGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

237

Amino Acids

26.27

Weight (kDa)

9.55

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 79 - 162 3.1e-23 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000368)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54520
fragaria_vesca FvH4_4g09430 FvH4_5g29750 FvH4_6g03490 FvH4_6g03500 FvH4_6g03510 FvH4_6g03510 FvH4_6g03510 FvH4_6g03520 FvH4_6g03530 FvH4_6g03530 FvH4_6g03530
malus_domestica MD04G1220400.v1.1 MD12G1236800.v1.1
prunus_persica Prupe.6G339400_v2.0.a1 Prupe.6G339400_v2.0.a1
pyrus_communis pycom04g19510 pycom12g21790
rosa_chinensis RchiOBHm_Chr3g0451981 RchiOBHm_Chr3g0451991 RchiOBHm_Chr3g0452001 RchiOBHm_Chr3g0452011 RchiOBHm_Chr3g0452041 RchiOBHm_Chr3g0452111 RchiOBHm_Chr3g0452121
rosa_laevigata RLG00000009056 RLG00000025627 RLG00000025628 RLG00000025630 RLG00000025631 RLG00000025632 RLG00000035582
rosa_multiflora Rmu_co8213316.1_g000001 Rmu_co8226081.1_g000001 Rmu_co8290691.1_g000001 Rmu_sc0001358.1_g000002 Rmu_sc0001358.1_g000004 Rmu_sc0001358.1_g000008 Rmu_sc0001358.1_g000011 Rmu_sc0001448.1_g000001 Rmu_sc0001448.1_g000005 Rmu_sc0001448.1_g000009 Rmu_sc0001729.1_g000006 Rmu_sc0001729.1_g000012 Rmu_sc0001729.1_g000017
rosa_roxburghii Rroxscaffold_164G00436060 Rroxscaffold_164G00436070 Rroxscaffold_164G00436100 Rroxscaffold_164G00436110 Rroxscaffold_164G00436120 Rroxscaffold_164G00436130 Rroxscaffold_4G00296230 Rroxscaffold_6G00389530 Rroxscaffold_6G00429160 Rroxscaffold_6G00429170 Rroxscaffold_6G00429200 Rroxscaffold_6G00429220 Rroxscaffold_6G00429240
rosa_rugosa Rorug01G0052400 Rorug01G0052500 Rorug02G0637900 Rorug02G0637900 Rorug02G0638000 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638100 Rorug02G0638200 Rorug02G0638300 Rorug02G0638400 Rorug04G0037400
rosa_samantha Rh2DG349300 Rh3AG039600 Rh3AG039700 Rh3AG039800 Rh3AG039900 Rh3AG040200 Rh3AG040300 Rh3BG041100 Rh3BG041200 Rh3BG041300 Rh3BG041500 Rh3BG041700 Rh3BG041800 Rh3CG039500 Rh3CG039600 Rh3CG039700 Rh3CG039800 Rh3CG040000 Rh3CG040200 Rh3DG040200 Rh3DG040400 Rh3DG040500 Rh3DG041000 Rh3DG041100 Rh4BG107500 Rh6BG085400 Rh6DG400800
rosa_wichuraiana Rw0G023520 Rw3G002980 Rw3G002990 Rw3G003010 Rw3G003030 Rw3G003040 Rw3G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 112
AccIII TCCGGA 1 cut(s) 71
AciI CCGC 4 cut(s) 15, 79, 84, 148
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 3 cut(s) 285, 308, 380
AcuI CTGAAG 3 cut(s) 248, 444, 644
AfaI GTAC 2 cut(s) 614, 631
AfeI AGCGCT 1 cut(s) 707
AfiI CCNNNNNNNGG 4 cut(s) 55, 75, 78, 114
AgsI TTSAA 3 cut(s) 201, 280, 296
AhdI GACNNNNNGTC 1 cut(s) 246
AjiI CACGTC 1 cut(s) 661
AluBI AGCT 1 cut(s) 138
AluI AGCT 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 112
Aor13HI TCCGGA 1 cut(s) 71
Aor51HI AGCGCT 1 cut(s) 707
AoxI GGCC 3 cut(s) 12, 46, 303
ApeKI GCWGC 2 cut(s) 65, 473
ApoI RAATTY 3 cut(s) 285, 308, 380
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AseI ATTAAT 1 cut(s) 479
Asp700I GAANNNNTTC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 708
AspS9I GGNCC 2 cut(s) 47, 303
AsuHPI GGTGA 2 cut(s) 250, 578
AvaI CYCGRG 1 cut(s) 112
BarI GAAGNNNNNNTAC 2 cut(s) 82, 114
BbsI GAAGAC 1 cut(s) 168
BbvI GCAGC 2 cut(s) 77, 485
BccI CCATC 1 cut(s) 569
BclI TGATCA 1 cut(s) 543
BfmI CTRYAG 1 cut(s) 139
BfoI RGCGCY 1 cut(s) 709
BisI GCNGC 3 cut(s) 15, 66, 474
BlsI GCNGC 3 cut(s) 16, 67, 475
BmeRI GACNNNNNGTC 1 cut(s) 246
BmeT110I CYCGRG 1 cut(s) 112
BmgBI CACGTC 1 cut(s) 661
BmgT120I GGNCC 2 cut(s) 47, 303
BmiI GGNNCC 1 cut(s) 49
BmsI GCATC 1 cut(s) 253
BpiI GAAGAC 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 202
BsaWI WCCGGW 1 cut(s) 71
Bsc4I CCNNNNNNNGG 4 cut(s) 55, 75, 78, 114
Bse1I ACTGG 1 cut(s) 687
BseAI TCCGGA 1 cut(s) 71
BseGI GGATG 1 cut(s) 104
BseLI CCNNNNNNNGG 4 cut(s) 55, 75, 78, 114
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 1 cut(s) 687
BseRI GAGGAG 1 cut(s) 100
BseXI GCAGC 2 cut(s) 77, 485
Bsh1285I CGRYCG 1 cut(s) 152
BshFI GGCC 3 cut(s) 14, 48, 305
BsiEI CGRYCG 1 cut(s) 152
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 1 cut(s) 72
BslI CCNNNNNNNGG 4 cut(s) 55, 75, 78, 114
BsnI GGCC 3 cut(s) 14, 48, 305
BsoBI CYCGRG 1 cut(s) 112
Bsp13I TCCGGA 1 cut(s) 71
Bsp1407I TGTACA 1 cut(s) 612
Bsp143I GATC 2 cut(s) 95, 543
BspACI CCGC 4 cut(s) 15, 79, 84, 148
BspANI GGCC 3 cut(s) 14, 48, 305
BspCNI CTCAG 1 cut(s) 454
BspEI TCCGGA 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 49
BsrGI TGTACA 1 cut(s) 612
BsrI ACTGG 1 cut(s) 687
BssMI GATC 2 cut(s) 95, 543
Bst6I CTCTTC 1 cut(s) 291
BstAPI GCANNNNNTGC 1 cut(s) 439
BstAUI TGTACA 1 cut(s) 612
BstC8I GCNNGC 2 cut(s) 6, 431
BstDEI CTNAG 1 cut(s) 462
BstENI CCTNNNNNAGG 1 cut(s) 112
BstF5I GGATG 1 cut(s) 104
BstH2I RGCGCY 1 cut(s) 709
BstHHI GCGC 1 cut(s) 708
BstKTI GATC 2 cut(s) 98, 546
BstMBI GATC 2 cut(s) 95, 543
BstMCI CGRYCG 1 cut(s) 152
BstMWI GCNNNNNNNGC 7 cut(s) 14, 65, 90, 363, 439, 495, 670
BstSFI CTRYAG 1 cut(s) 139
BstV1I GCAGC 2 cut(s) 77, 485
BstV2I GAAGAC 1 cut(s) 168
BsuRI GGCC 3 cut(s) 14, 48, 305
BtrI CACGTC 1 cut(s) 661
BtsCI GGATG 1 cut(s) 104
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 2 cut(s) 6, 431
CfoI GCGC 1 cut(s) 708
Cfr13I GGNCC 2 cut(s) 47, 303
Csp6I GTAC 2 cut(s) 613, 630
CviAII CATG 1 cut(s) 448
CviQI GTAC 2 cut(s) 613, 630
DdeI CTNAG 1 cut(s) 462
DpnI GATC 2 cut(s) 97, 545
DpnII GATC 2 cut(s) 95, 543
DraI TTTAAA 1 cut(s) 556
DriI GACNNNNNGTC 1 cut(s) 246
EaeI YGGCCR 1 cut(s) 12
Eam1104I CTCTTC 1 cut(s) 291
Eam1105I GACNNNNNGTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 291
Eco47III AGCGCT 1 cut(s) 707
Eco57I CTGAAG 3 cut(s) 248, 444, 644
Eco88I CYCGRG 1 cut(s) 112
EcoNI CCTNNNNNAGG 1 cut(s) 112
FaeI CATG 1 cut(s) 451
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FatI CATG 1 cut(s) 447
FauNDI CATATG 1 cut(s) 435
FbaI TGATCA 1 cut(s) 543
Fnu4HI GCNGC 3 cut(s) 15, 66, 474
FokI GGATG 1 cut(s) 91
Fsp4HI GCNGC 3 cut(s) 15, 66, 474
GlaI GCGC 1 cut(s) 707
GluI GCNGC 3 cut(s) 15, 66, 474
HaeII RGCGCY 1 cut(s) 709
HaeIII GGCC 3 cut(s) 14, 48, 305
HapII CCGG 1 cut(s) 72
HhaI GCGC 1 cut(s) 708
Hin1II CATG 1 cut(s) 451
Hin6I GCGC 1 cut(s) 706
HinP1I GCGC 1 cut(s) 706
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HinfI GANTC 4 cut(s) 188, 232, 241, 640
HpaII CCGG 1 cut(s) 72
HphI GGTGA 2 cut(s) 250, 578
Hpy166II GTNNAC 2 cut(s) 171, 337
Hpy188I TCNGA 3 cut(s) 187, 228, 702
Hpy188III TCNNGA 1 cut(s) 72
Hpy8I GTNNAC 2 cut(s) 171, 337
HpyAV CCTTC 2 cut(s) 419, 619
HpyCH4IV ACGT 4 cut(s) 101, 173, 632, 660
HpyCH4V TGCA 3 cut(s) 266, 484, 581
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 65, 90, 363, 439, 495, 670
HpyF3I CTNAG 1 cut(s) 462
HpySE526I ACGT 4 cut(s) 101, 173, 632, 660
Hsp92II CATG 1 cut(s) 451
HspAI GCGC 1 cut(s) 706
Kpn2I TCCGGA 1 cut(s) 71
Ksp22I TGATCA 1 cut(s) 543
Kzo9I GATC 2 cut(s) 95, 543
LmnI GCTCC 1 cut(s) 670
Lsp1109I GCAGC 2 cut(s) 77, 485
LweI GCATC 1 cut(s) 253
MaeII ACGT 4 cut(s) 101, 173, 632, 660
MaeIII GTNAC 2 cut(s) 238, 403
MalI GATC 2 cut(s) 97, 545
MboI GATC 2 cut(s) 95, 543
MboII GAAGA 6 cut(s) 168, 241, 308, 329, 361, 698
MluCI AATT 8 cut(s) 52, 181, 196, 285, 308, 380, 582, 591
MlyI GAGTC 2 cut(s) 235, 634
MroI TCCGGA 1 cut(s) 71
MroXI GAANNNNTTC 1 cut(s) 275
MseI TTAA 6 cut(s) 195, 330, 467, 479, 555, 712
MspI CCGG 1 cut(s) 72
MwoI GCNNNNNNNGC 7 cut(s) 14, 65, 90, 363, 439, 495, 670
NdeI CATATG 1 cut(s) 435
NdeII GATC 2 cut(s) 95, 543
NlaIII CATG 1 cut(s) 451
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 238
PaeR7I CTCGAG 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 275
PfeI GAWTC 2 cut(s) 188, 232
PkrI GCNGC 3 cut(s) 16, 67, 475
PleI GAGTC 2 cut(s) 235, 634
PpsI GAGTC 2 cut(s) 235, 634
PshBI ATTAAT 1 cut(s) 479
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 2 cut(s) 47, 303
PspXI VCTCGAGB 1 cut(s) 112
RsaI GTAC 2 cut(s) 614, 631
RsaNI GTAC 2 cut(s) 613, 630
SaqAI TTAA 6 cut(s) 195, 330, 467, 479, 555, 712
SatI GCNGC 3 cut(s) 15, 66, 474
Sau3AI GATC 2 cut(s) 95, 543
Sau96I GGNCC 2 cut(s) 47, 303
SchI GAGTC 2 cut(s) 235, 634
SfaNI GCATC 1 cut(s) 253
SfcI CTRYAG 1 cut(s) 139
Sfr274I CTCGAG 1 cut(s) 112
SlaI CTCGAG 1 cut(s) 112
SmlI CTYRAG 2 cut(s) 112, 217
SmoI CTYRAG 2 cut(s) 112, 217
Sse9I AATT 8 cut(s) 52, 181, 196, 285, 308, 380, 582, 591
SsiI CCGC 4 cut(s) 15, 79, 84, 148
TaiI ACGT 4 cut(s) 104, 176, 635, 663
TaqI TCGA 1 cut(s) 113
TasI AATT 8 cut(s) 52, 181, 196, 285, 308, 380, 582, 591
TatI WGTACW 1 cut(s) 612
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 2 cut(s) 188, 232
Tru1I TTAA 6 cut(s) 195, 330, 467, 479, 555, 712
Tru9I TTAA 6 cut(s) 195, 330, 467, 479, 555, 712
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 2 cut(s) 65, 473
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 3 cut(s) 330, 405, 464
TspRI CASTG 1 cut(s) 24
VspI ATTAAT 1 cut(s) 479
XagI CCTNNNNNAGG 1 cut(s) 112
XapI RAATTY 3 cut(s) 285, 308, 380
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XhoI CTCGAG 1 cut(s) 112
XmnI GAANNNNTTC 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.